Rr426706 Mouse SNP Summary

Mouse SNP Summary

Symbol
Name
ID

Rr426706
regulatory region 426706
MGI:7888838

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Showing SNP(s) 1 - 50 of 50

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SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238140108 MGI SNP Detail Alliance Variant	Chr1:194473667	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1978 bp proximal	SNP	A/T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	T	A	A	A	A
rs253670894 MGI SNP Detail Alliance Variant	Chr1:194473684	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1961 bp proximal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs224131279 MGI SNP Detail Alliance Variant	Chr1:194473724	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1921 bp proximal	SNP	A/G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A
rs48512363 MGI SNP Detail Alliance Variant	Chr1:194473857	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1788 bp proximal	SNP	A/C		C		C	C		C		C			C								A					C	C			C					C	C				C		C												C
rs264265058 MGI SNP Detail Alliance Variant	Chr1:194473870	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1775 bp proximal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs51281095 MGI SNP Detail Alliance Variant	Chr1:194473871	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1774 bp proximal	SNP	C/T		T		T	T		T		T			T								C					T	T			T					C	T				T		T												T
rs51484183 MGI SNP Detail Alliance Variant	Chr1:194473918	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1727 bp proximal	SNP	C/T		C		C	C		C		C			C								T					C	C			C					C	C				C		C												C
rs49219511 MGI SNP Detail Alliance Variant	Chr1:194473950	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1695 bp proximal	SNP	A/G		A		A	A		A		A			A								A					A	A			A					G	A				A		A												A
rs214024981 MGI SNP Detail Alliance Variant	Chr1:194473999	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1646 bp proximal	SNP	C/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G			G		G					G		G	C	G	G	G
rs232683716 MGI SNP Detail Alliance Variant	Chr1:194474037	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1608 bp proximal	SNP	A/G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs243430349 MGI SNP Detail Alliance Variant	Chr1:194474181	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1464 bp proximal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs213024512 MGI SNP Detail Alliance Variant	Chr1:194474206	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1439 bp proximal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs235695333 MGI SNP Detail Alliance Variant	Chr1:194474385	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1260 bp proximal	SNP	G/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	T	T	T	G	T	T	T	G	G	T		T	G	G	G	G	T	G	T	G	T	T	T	G
rs264252381 MGI SNP Detail Alliance Variant	Chr1:194474533	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1112 bp proximal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs6195044 MGI SNP Detail Alliance Variant	Chr1:194474679	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 966 bp proximal	SNP	C/T		C		C	C		C		C			C			C					T			T		C	C			C					T	C				C		C												C
rs241530140 MGI SNP Detail Alliance Variant	Chr1:194474728	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 917 bp proximal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs6196141 MGI SNP Detail Alliance Variant	Chr1:194474900	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 745 bp proximal	SNP	A/C															A								C
rs578924772 MGI SNP Detail Alliance Variant	Chr1:194475049	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 596 bp proximal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs257475840 MGI SNP Detail Alliance Variant	Chr1:194475097	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 548 bp proximal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs220378803 MGI SNP Detail Alliance Variant	Chr1:194475101	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 544 bp proximal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs45805373 MGI SNP Detail Alliance Variant	Chr1:194475314	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 331 bp proximal	SNP	A/G		A		A	A		A		A			A								A					A	A			A					G	A				A		A												A
rs249164832 MGI SNP Detail Alliance Variant	Chr1:194475317	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 328 bp proximal	SNP	A/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	A	T	T	T	T
rs48708979 MGI SNP Detail Alliance Variant	Chr1:194475561	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 84 bp proximal	SNP	A/G		G		G	G		G		G			G								G					G	G			G					G	G				A		G												G
rs247206949 MGI SNP Detail Alliance Variant	Chr1:194475806	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 within coordinates of	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs266049805 MGI SNP Detail Alliance Variant	Chr1:194476073	Plxna2 Coding-NonSynonymous Plxna2 Noncoding-Transcript-Variant Rr426706 201 bp distal	SNP	A/C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	A	C	C	C	C
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231386050 MGI SNP Detail Alliance Variant	Chr1:194476102	Plxna2 Coding-Synonymous Plxna2 Noncoding-Transcript-Variant Rr426706 230 bp distal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	T	T	C		C	T	T	T	T	C	T	C	T	C	C	C	T
rs248889776 MGI SNP Detail Alliance Variant	Chr1:194476159	Plxna2 Coding-Synonymous Plxna2 Noncoding-Transcript-Variant Rr426706 287 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs48702063 MGI SNP Detail Alliance Variant	Chr1:194476299	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 427 bp distal	SNP	A/C		A		A	A		A		A			A								A					A	A			A					C	A				A		A												A
rs257486043 MGI SNP Detail Alliance Variant	Chr1:194476399	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 527 bp distal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs226557807 MGI SNP Detail Alliance Variant	Chr1:194476412	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 540 bp distal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs243366977 MGI SNP Detail Alliance Variant	Chr1:194476457	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 585 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs585321976 MGI SNP Detail Alliance Variant	Chr1:194476896	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1024 bp distal	SNP	A/C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	C	A	A	A	A
rs212756987 MGI SNP Detail Alliance Variant	Chr1:194476928	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1056 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs234282908 MGI SNP Detail Alliance Variant	Chr1:194476938	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1066 bp distal	SNP	A/T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	T	A	A	A	A
rs254898957 MGI SNP Detail Alliance Variant	Chr1:194476992	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1120 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs49456637 MGI SNP Detail Alliance Variant	Chr1:194477026	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1154 bp distal	SNP	A/G		G		G	G		G		G			G								G					G	G			G					G	G				A		G												G
rs238718000 MGI SNP Detail Alliance Variant	Chr1:194477076	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1204 bp distal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs262071358 MGI SNP Detail Alliance Variant	Chr1:194477142	Plxna2 Coding-Synonymous Plxna2 Noncoding-Transcript-Variant Rr426706 1270 bp distal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs46967933 MGI SNP Detail Alliance Variant	Chr1:194477298	Plxna2 Coding-Synonymous Plxna2 Noncoding-Transcript-Variant Rr426706 1426 bp distal	SNP	C/T		C		C	C		C		C			C								C					C	C			C					T	C				C		C												C
rs46354384 MGI SNP Detail Alliance Variant	Chr1:194477382	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1510 bp distal	SNP	C/T		T		T	T		T		T			T								T					T	T			T					C	T				T		T												T
rs230344567 MGI SNP Detail Alliance Variant	Chr1:194477386	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1514 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs249148213 MGI SNP Detail Alliance Variant	Chr1:194477396	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1524 bp distal	SNP	A/T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	T	A	A	A	A
rs51685101 MGI SNP Detail Alliance Variant	Chr1:194477480	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1608 bp distal	SNP	C/T		C		C	C		C		C			C								C					C	C			C					T	C				C		C												C
rs249836395 MGI SNP Detail Alliance Variant	Chr1:194477626	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1754 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs260740131 MGI SNP Detail Alliance Variant	Chr1:194477636	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1764 bp distal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs223927704 MGI SNP Detail Alliance Variant	Chr1:194477637	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1765 bp distal	SNP	C/T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs245922671 MGI SNP Detail Alliance Variant	Chr1:194477757	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1885 bp distal	SNP	C/T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs257235475 MGI SNP Detail Alliance Variant	Chr1:194477770	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1898 bp distal	SNP	A/G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs50324163 MGI SNP Detail Alliance Variant	Chr1:194477790	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1918 bp distal	SNP	C/T		T		T	T		T		T			T								T					T	T			T					C	T				T		T												T
rs49013096 MGI SNP Detail Alliance Variant	Chr1:194477846	Plxna2 Intron Plxna2 Noncoding-Transcript-Variant Rr426706 1974 bp distal	SNP	C/T		C		C	C		C		C			C								T					C	C			C					C	C				C		C												C

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Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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