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Mouse SNP Summary
Symbol
Name
ID 		Rr480569
regulatory region 480569
MGI:7942701

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246934689
MGI SNP Detail
Alliance Variant		 Chr13:55978601 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Coding-Synonymous
Rr480569 1996 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs214882990
MGI SNP Detail
Alliance Variant		 Chr13:55978670 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Coding-Synonymous
Rr480569 1927 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232480807
MGI SNP Detail
Alliance Variant		 Chr13:55978694 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Coding-Synonymous
Rr480569 1903 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244798784
MGI SNP Detail
Alliance Variant		 Chr13:55978712 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Coding-Synonymous
Rr480569 1885 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs212658233
MGI SNP Detail
Alliance Variant		 Chr13:55978869 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Pitx1 mRNA-UTR
Rr480569 1728 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs236066945
MGI SNP Detail
Alliance Variant		 Chr13:55978946 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Pitx1 mRNA-UTR
Rr480569 1651 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260819721
MGI SNP Detail
Alliance Variant		 Chr13:55979072 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Pitx1 mRNA-UTR
Rr480569 1525 bp proximal
Tssr122726 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs226144844
MGI SNP Detail
Alliance Variant		 Chr13:55979208 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Pitx1 mRNA-UTR
Rr480569 1389 bp proximal
Tssr122728 within coordinates of
 SNP C/T T T T T T T T T T T T C T T C T T T C T T T T C T T T T T C T T T T T T T C T T T T
rs238682215
MGI SNP Detail
Alliance Variant		 Chr13:55979358 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1239 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251262398
MGI SNP Detail
Alliance Variant		 Chr13:55979367 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1230 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs29684359
MGI SNP Detail
Alliance Variant		 Chr13:55979441 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1156 bp proximal
 SNP A/C A C A A
rs237714411
MGI SNP Detail
Alliance Variant		 Chr13:55979470 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1127 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254778472
MGI SNP Detail
Alliance Variant		 Chr13:55979516 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1081 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C G G G G G G C G G G G G G G C G G G G
rs220714619
MGI SNP Detail
Alliance Variant		 Chr13:55979578 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1019 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251725726
MGI SNP Detail
Alliance Variant		 Chr13:55979580 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 1017 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264175173
MGI SNP Detail
Alliance Variant		 Chr13:55979647 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 950 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs233527228
MGI SNP Detail
Alliance Variant		 Chr13:55979709 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480568 within coordinates of
Rr480569 888 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246878302
MGI SNP Detail
Alliance Variant		 Chr13:55979789 Cpgi5690 within coordinates of
Gm47071 within coordinates of
Pitx1 Intron
Rr480569 808 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258750805
MGI SNP Detail
Alliance Variant		 Chr13:55979972 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 625 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs226255874
MGI SNP Detail
Alliance Variant		 Chr13:55980048 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 549 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs244743666
MGI SNP Detail
Alliance Variant		 Chr13:55980162 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 435 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212970480
MGI SNP Detail
Alliance Variant		 Chr13:55980264 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 333 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234479134
MGI SNP Detail
Alliance Variant		 Chr13:55980428 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 169 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259994716
MGI SNP Detail
Alliance Variant		 Chr13:55980520 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 77 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217870844
MGI SNP Detail
Alliance Variant		 Chr13:55980589 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 8 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233521422
MGI SNP Detail
Alliance Variant		 Chr13:55980699 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 81 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251210004
MGI SNP Detail
Alliance Variant		 Chr13:55980789 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 171 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs214427954
MGI SNP Detail
Alliance Variant		 Chr13:55980867 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 249 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231480169
MGI SNP Detail
Alliance Variant		 Chr13:55980959 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 341 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249013320
MGI SNP Detail
Alliance Variant		 Chr13:55980971 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 353 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220296101
MGI SNP Detail
Alliance Variant		 Chr13:55981054 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 436 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs248547176
MGI SNP Detail
Alliance Variant		 Chr13:55981110 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 492 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263900719
MGI SNP Detail
Alliance Variant		 Chr13:55981132 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 514 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225249748
MGI SNP Detail
Alliance Variant		 Chr13:55981133 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 515 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240842748
MGI SNP Detail
Alliance Variant		 Chr13:55981298 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 680 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs258692298
MGI SNP Detail
Alliance Variant		 Chr13:55981376 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 758 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs226188758
MGI SNP Detail
Alliance Variant		 Chr13:55981453 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 835 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs29495693
MGI SNP Detail
Alliance Variant		 Chr13:55981490 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 872 bp distal
 SNP C/T C T T
rs51829037
MGI SNP Detail
Alliance Variant		 Chr13:55981499 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 881 bp distal
 SNP C/T T C C
rs261790758
MGI SNP Detail
Alliance Variant		 Chr13:55981577 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 959 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227821918
MGI SNP Detail
Alliance Variant		 Chr13:55981637 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1019 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254504846
MGI SNP Detail
Alliance Variant		 Chr13:55981697 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1079 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217911284
MGI SNP Detail
Alliance Variant		 Chr13:55981736 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1118 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227452889
MGI SNP Detail
Alliance Variant		 Chr13:55981738 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1120 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs245195444
MGI SNP Detail
Alliance Variant		 Chr13:55981746 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1128 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs29823404
MGI SNP Detail
Alliance Variant		 Chr13:55981760 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1142 bp distal
 SNP A/T T A T T
rs231421408
MGI SNP Detail
Alliance Variant		 Chr13:55981828 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1210 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs261590099
MGI SNP Detail
Alliance Variant		 Chr13:55981836 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1218 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs212118554
MGI SNP Detail
Alliance Variant		 Chr13:55981928 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1310 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs243216276
MGI SNP Detail
Alliance Variant		 Chr13:55981959 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1341 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260413259
MGI SNP Detail
Alliance Variant		 Chr13:55982121 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1503 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222091770
MGI SNP Detail
Alliance Variant		 Chr13:55982146 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1528 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs240781527
MGI SNP Detail
Alliance Variant		 Chr13:55982179 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1561 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252346559
MGI SNP Detail
Alliance Variant		 Chr13:55982217 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1599 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs219870438
MGI SNP Detail
Alliance Variant		 Chr13:55982350 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1732 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238461561
MGI SNP Detail
Alliance Variant		 Chr13:55982360 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1742 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264767299
MGI SNP Detail
Alliance Variant		 Chr13:55982366 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1748 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227286493
MGI SNP Detail
Alliance Variant		 Chr13:55982451 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1833 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29510101
MGI SNP Detail
Alliance Variant		 Chr13:55982522 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1904 bp distal
 SNP A/G G A
rs263906422
MGI SNP Detail
Alliance Variant		 Chr13:55982598 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1980 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227397278
MGI SNP Detail
Alliance Variant		 Chr13:55982603 Gm47071 within coordinates of
Pitx1 Intron
Rr480569 1985 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 61 of 61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory