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Mouse SNP Summary
Symbol
Name
ID
Rr480636
regulatory region 480636
MGI:7942768

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586087720
MGI SNP Detail
Alliance Variant
Chr13:56261135 Cpgi5694 within coordinates of
Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1994 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221759290
MGI SNP Detail
Alliance Variant
Chr13:56261186 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1943 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233935984
MGI SNP Detail
Alliance Variant
Chr13:56261210 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1919 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252114496
MGI SNP Detail
Alliance Variant
Chr13:56261421 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1708 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219657030
MGI SNP Detail
Alliance Variant
Chr13:56261422 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1707 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47469457
MGI SNP Detail
Alliance Variant
Chr13:56261461 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1668 bp proximal
SNP A/G G G A
rs242371081
MGI SNP Detail
Alliance Variant
Chr13:56261486 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1643 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46608309
MGI SNP Detail
Alliance Variant
Chr13:56261634 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1495 bp proximal
SNP A/G A A A A G A A G A G A
rs47664058
MGI SNP Detail
Alliance Variant
Chr13:56261638 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1491 bp proximal
SNP A/C A A A C A A A C A C C A C
rs47290935
MGI SNP Detail
Alliance Variant
Chr13:56261644 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1485 bp proximal
SNP T T T
rs29962964
MGI SNP Detail
Alliance Variant
Chr13:56261684 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1445 bp proximal
SNP C/G C C G C C
rs227174361
MGI SNP Detail
Alliance Variant
Chr13:56261704 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1425 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs244915074
MGI SNP Detail
Alliance Variant
Chr13:56261752 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1377 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255906489
MGI SNP Detail
Alliance Variant
Chr13:56261783 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1346 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229759102
MGI SNP Detail
Alliance Variant
Chr13:56261784 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1345 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46229288
MGI SNP Detail
Alliance Variant
Chr13:56261818 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1311 bp proximal
SNP A/G A A A A A A G A A A G A A G A
rs580465617
MGI SNP Detail
Alliance Variant
Chr13:56261864 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1265 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs48220180
MGI SNP Detail
Alliance Variant
Chr13:56261894 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1235 bp proximal
SNP C/T C C C C C C C C C C T C C C C
rs211846777
MGI SNP Detail
Alliance Variant
Chr13:56261945 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1184 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233661653
MGI SNP Detail
Alliance Variant
Chr13:56262036 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1093 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs247868334
MGI SNP Detail
Alliance Variant
Chr13:56262058 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1071 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215421071
MGI SNP Detail
Alliance Variant
Chr13:56262065 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1064 bp proximal
SNP C/T C T
rs215835144
MGI SNP Detail
Alliance Variant
Chr13:56262066 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1063 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs233856833
MGI SNP Detail
Alliance Variant
Chr13:56262074 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1055 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252063686
MGI SNP Detail
Alliance Variant
Chr13:56262120 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1009 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51760956
MGI SNP Detail
Alliance Variant
Chr13:56262146 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 983 bp proximal
SNP A/G G G G G G G G G G G A G G G G
rs213743707
MGI SNP Detail
Alliance Variant
Chr13:56262156 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 973 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs45878682
MGI SNP Detail
Alliance Variant
Chr13:56262170 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 959 bp proximal
SNP C/T C C C C C C T C C C C C C C C
rs46943879
MGI SNP Detail
Alliance Variant
Chr13:56262329 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 800 bp proximal
SNP A/T T T T T T T A T T T T T T T T
rs227367971
MGI SNP Detail
Alliance Variant
Chr13:56262339 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 790 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247726835
MGI SNP Detail
Alliance Variant
Chr13:56262353 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 776 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46126450
MGI SNP Detail
Alliance Variant
Chr13:56262539 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 590 bp proximal
SNP A/G A A A A A A G A A A A A A A A
rs221036659
MGI SNP Detail
Alliance Variant
Chr13:56262547 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 582 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49809137
MGI SNP Detail
Alliance Variant
Chr13:56262560 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 569 bp proximal
SNP A/G A A A A A A G A A A A A A A A
rs232502897
MGI SNP Detail
Alliance Variant
Chr13:56262626 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 503 bp proximal
SNP C/T C T
rs255780367
MGI SNP Detail
Alliance Variant
Chr13:56262681 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 448 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229307178
MGI SNP Detail
Alliance Variant
Chr13:56262905 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 224 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs48294587
MGI SNP Detail
Alliance Variant
Chr13:56263003 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 126 bp proximal
SNP A/G A A A A A A G A A A G A A G A
rs261282773
MGI SNP Detail
Alliance Variant
Chr13:56263089 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 40 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs48545628
MGI SNP Detail
Alliance Variant
Chr13:56263124 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 5 bp proximal
SNP A/G A A A A A A G A A A A A A A A
rs247812997
MGI SNP Detail
Alliance Variant
Chr13:56263179 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs50054544
MGI SNP Detail
Alliance Variant
Chr13:56263181 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/C A A A A A A A A A C A A C A
rs50415494
MGI SNP Detail
Alliance Variant
Chr13:56263258 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/C C C C C C C A C C C C C C C C
rs47477954
MGI SNP Detail
Alliance Variant
Chr13:56263267 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP G/T G T G T G T G G G G G G G G G
rs47432768
MGI SNP Detail
Alliance Variant
Chr13:56263289 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP C/T C C C C C C T C C C C C C C C
rs235467336
MGI SNP Detail
Alliance Variant
Chr13:56263325 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47128995
MGI SNP Detail
Alliance Variant
Chr13:56263453 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP C/T C C C C C C T C C C C C C C C
rs219349573
MGI SNP Detail
Alliance Variant
Chr13:56263484 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30041691
MGI SNP Detail
Alliance Variant
Chr13:56263485 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/G G G A G G G A G A A G G G G G G A
rs252073276
MGI SNP Detail
Alliance Variant
Chr13:56263521 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220936162
MGI SNP Detail
Alliance Variant
Chr13:56263539 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238609983
MGI SNP Detail
Alliance Variant
Chr13:56263580 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257358791
MGI SNP Detail
Alliance Variant
Chr13:56263620 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47149146
MGI SNP Detail
Alliance Variant
Chr13:56263624 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 within coordinates of
SNP A/G G G G G G G G G G G A G G G G
rs579687185
MGI SNP Detail
Alliance Variant
Chr13:56263721 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 62 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585445397
MGI SNP Detail
Alliance Variant
Chr13:56263723 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 64 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs50954772
MGI SNP Detail
Alliance Variant
Chr13:56263810 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 151 bp distal
SNP A/T T T A T T T T T A A T T T T T T A
rs241708370
MGI SNP Detail
Alliance Variant
Chr13:56263824 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 165 bp distal
Rr480637 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264474973
MGI SNP Detail
Alliance Variant
Chr13:56263825 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 166 bp distal
Rr480637 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs51684043
MGI SNP Detail
Alliance Variant
Chr13:56263876 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 217 bp distal
Rr480637 within coordinates of
SNP A/G G G G G G G G G G G A G G
rs50936980
MGI SNP Detail
Alliance Variant
Chr13:56263894 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 235 bp distal
Rr480637 within coordinates of
SNP A/G G G G G G G A G G G G G G G G
rs241716472
MGI SNP Detail
Alliance Variant
Chr13:56263906 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 247 bp distal
Rr480637 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs48382419
MGI SNP Detail
Alliance Variant
Chr13:56263958 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 299 bp distal
Rr480637 within coordinates of
SNP A/G G G G G G G A G G G G G G G G
rs46648134
MGI SNP Detail
Alliance Variant
Chr13:56263982 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 323 bp distal
Rr480637 within coordinates of
SNP C/T T T T T T T T T T T C T T C T
rs245612910
MGI SNP Detail
Alliance Variant
Chr13:56263985 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 326 bp distal
Rr480637 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51425308
MGI SNP Detail
Alliance Variant
Chr13:56264056 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 397 bp distal
Rr480637 within coordinates of
SNP C/T T T T T T T C T T T C T T C T
rs229180099
MGI SNP Detail
Alliance Variant
Chr13:56264066 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 407 bp distal
Rr480637 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249143948
MGI SNP Detail
Alliance Variant
Chr13:56264077 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 418 bp distal
Rr480637 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219074396
MGI SNP Detail
Alliance Variant
Chr13:56264137 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 478 bp distal
Rr480637 within coordinates of
SNP A/G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G T G G G G
rs234364815
MGI SNP Detail
Alliance Variant
Chr13:56264169 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 510 bp distal
Rr480637 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs48058046
MGI SNP Detail
Alliance Variant
Chr13:56264255 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 596 bp distal
SNP A/T T T T A
rs215318830
MGI SNP Detail
Alliance Variant
Chr13:56264259 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 600 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs232321062
MGI SNP Detail
Alliance Variant
Chr13:56264263 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 604 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs262155284
MGI SNP Detail
Alliance Variant
Chr13:56264264 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 605 bp distal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222023551
MGI SNP Detail
Alliance Variant
Chr13:56264265 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 606 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236696467
MGI SNP Detail
Alliance Variant
Chr13:56264285 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 626 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261149347
MGI SNP Detail
Alliance Variant
Chr13:56264330 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 671 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223085484
MGI SNP Detail
Alliance Variant
Chr13:56264339 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 680 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs241658424
MGI SNP Detail
Alliance Variant
Chr13:56264343 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 684 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259632672
MGI SNP Detail
Alliance Variant
Chr13:56264362 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 703 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220817873
MGI SNP Detail
Alliance Variant
Chr13:56264369 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 710 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48291766
MGI SNP Detail
Alliance Variant
Chr13:56264373 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 714 bp distal
SNP C/T T T T T T T C T T T T T T T T
rs265035235
MGI SNP Detail
Alliance Variant
Chr13:56264402 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 743 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs228550990
MGI SNP Detail
Alliance Variant
Chr13:56264433 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 774 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs583125253
MGI SNP Detail
Alliance Variant
Chr13:56264444 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 785 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs46209459
MGI SNP Detail
Alliance Variant
Chr13:56264481 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 822 bp distal
SNP C/T C C C C C C T C C C C C C C C
rs264390948
MGI SNP Detail
Alliance Variant
Chr13:56264482 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 823 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs228396530
MGI SNP Detail
Alliance Variant
Chr13:56264505 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 846 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586882296
MGI SNP Detail
Alliance Variant
Chr13:56264508 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 849 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47973266
MGI SNP Detail
Alliance Variant
Chr13:56264540 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 881 bp distal
SNP C/G G G G G G G C G G G G G G G G
rs215305779
MGI SNP Detail
Alliance Variant
Chr13:56264578 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 919 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232268884
MGI SNP Detail
Alliance Variant
Chr13:56264638 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr388474 within coordinates of
Rr480636 979 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs250912723
MGI SNP Detail
Alliance Variant
Chr13:56264712 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1053 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213482388
MGI SNP Detail
Alliance Variant
Chr13:56264786 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1127 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234921483
MGI SNP Detail
Alliance Variant
Chr13:56264813 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1154 bp distal
SNP A/T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs264371762
MGI SNP Detail
Alliance Variant
Chr13:56264859 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1200 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs223025448
MGI SNP Detail
Alliance Variant
Chr13:56264895 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1236 bp distal
SNP G/T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs235217891
MGI SNP Detail
Alliance Variant
Chr13:56264933 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1274 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253290364
MGI SNP Detail
Alliance Variant
Chr13:56264947 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1288 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49996556
MGI SNP Detail
Alliance Variant
Chr13:56264972 Gm31485 within coordinates of
Macroh2a1 Intron
Macroh2a1 Noncoding-Transcript-Variant
Rr480636 1313 bp distal
SNP A/G G G G G G G G G G G G A G G G A G
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Showing SNP(s) 1 - 100 of 112

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory