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Mouse SNP Summary
Symbol
Name
ID 		Rr509880
regulatory region 509880
MGI:7972012

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Showing SNP(s) 1 - 41 of 41

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257566438
MGI SNP Detail
Alliance Variant		 Chr15:100939105 Rr509880 1590 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G
rs228199645
MGI SNP Detail
Alliance Variant		 Chr15:100939365 Rr509880 1330 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T T T T T T T T T C T T T T
rs31860410
MGI SNP Detail
Alliance Variant		 Chr15:100939803 Rr509880 892 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A G G A G
rs32202232
MGI SNP Detail
Alliance Variant		 Chr15:100939964 Rr509880 731 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A A A A G G G G G A G G A G G G
rs233349337
MGI SNP Detail
Alliance Variant		 Chr15:100940020 Rr509880 675 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254742310
MGI SNP Detail
Alliance Variant		 Chr15:100940021 Rr509880 674 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31908717
MGI SNP Detail
Alliance Variant		 Chr15:100940027 Rr509880 668 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A G G A G
rs231884397
MGI SNP Detail
Alliance Variant		 Chr15:100940077 Rr509880 618 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs31579221
MGI SNP Detail
Alliance Variant		 Chr15:100940082 Rr509880 613 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/T T T T A T T A A A A T A T A A A
rs215595376
MGI SNP Detail
Alliance Variant		 Chr15:100940107 Rr509880 588 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232671310
MGI SNP Detail
Alliance Variant		 Chr15:100940114 Rr509880 581 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260691228
MGI SNP Detail
Alliance Variant		 Chr15:100940181 Rr509880 514 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32203145
MGI SNP Detail
Alliance Variant		 Chr15:100940184 Rr509880 511 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T T T T C T T C C C C C C T C C T C C C
rs242032639
MGI SNP Detail
Alliance Variant		 Chr15:100940213 Rr509880 482 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260908618
MGI SNP Detail
Alliance Variant		 Chr15:100940432 Rr509879 within coordinates of
Rr509880 263 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220260680
MGI SNP Detail
Alliance Variant		 Chr15:100940458 Rr509879 within coordinates of
Rr509880 237 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32203147
MGI SNP Detail
Alliance Variant		 Chr15:100940481 Rr509879 within coordinates of
Rr509880 214 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP G/T T T T T T G T T T T G T T G T
rs257630462
MGI SNP Detail
Alliance Variant		 Chr15:100940487 Rr509879 within coordinates of
Rr509880 208 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G A G G G G G G G G A G G G G G G G G G A G G G A G G A A A G G A G G G G G G G G A A A A
rs228118437
MGI SNP Detail
Alliance Variant		 Chr15:100940668 Rr509879 within coordinates of
Rr509880 27 bp proximal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248043310
MGI SNP Detail
Alliance Variant		 Chr15:100940864 Rr509880 148 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32203149
MGI SNP Detail
Alliance Variant		 Chr15:100940985 Rr509880 269 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/C A C C C A C A C A
rs32190544
MGI SNP Detail
Alliance Variant		 Chr15:100941004 Rr509880 288 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/T A A T A T
rs250159742
MGI SNP Detail
Alliance Variant		 Chr15:100941155 Rr509880 439 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs212313541
MGI SNP Detail
Alliance Variant		 Chr15:100941238 Rr509880 522 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226450898
MGI SNP Detail
Alliance Variant		 Chr15:100941239 Rr509880 523 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244150133
MGI SNP Detail
Alliance Variant		 Chr15:100941249 Rr509880 533 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32203151
MGI SNP Detail
Alliance Variant		 Chr15:100941259 Rr509880 543 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/G C C C C C C G G G G C C C G C G G G
rs579615450
MGI SNP Detail
Alliance Variant		 Chr15:100941342 Rr509880 626 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232546423
MGI SNP Detail
Alliance Variant		 Chr15:100941457 Rr509880 741 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs264110815
MGI SNP Detail
Alliance Variant		 Chr15:100941494 Rr509880 778 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217679613
MGI SNP Detail
Alliance Variant		 Chr15:100941728 Rr509880 1012 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236908408
MGI SNP Detail
Alliance Variant		 Chr15:100941751 Rr509880 1035 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255387927
MGI SNP Detail
Alliance Variant		 Chr15:100941873 Rr509880 1157 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs220128585
MGI SNP Detail
Alliance Variant		 Chr15:100942063 Rr509880 1347 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238857640
MGI SNP Detail
Alliance Variant		 Chr15:100942100 Rr509880 1384 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs253561975
MGI SNP Detail
Alliance Variant		 Chr15:100942235 Rr509880 1519 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245326864
MGI SNP Detail
Alliance Variant		 Chr15:100942422 Rr509880 1706 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C T C C C C C C C C T C C C C C C C C C T C C T C C T T T C C T C C C C C C C C T T T T
rs266200579
MGI SNP Detail
Alliance Variant		 Chr15:100942426 Rr509880 1710 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs225820577
MGI SNP Detail
Alliance Variant		 Chr15:100942555 Rr509880 1839 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245155944
MGI SNP Detail
Alliance Variant		 Chr15:100942643 Rr509880 1927 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs254232659
MGI SNP Detail
Alliance Variant		 Chr15:100942651 Rr509880 1935 bp distal
Scn8a mRNA-UTR
Scn8a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 41 of 41
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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