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Mouse SNP Summary
Symbol
Name
ID
Rr540181
regulatory region 540181
MGI:8002313

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Showing SNP(s) 1 - 89 of 89

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584101914
MGI SNP Detail
Alliance Variant
Chr18:69586957 Rr540181 1953 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254593109
MGI SNP Detail
Alliance Variant
Chr18:69586970 Rr540181 1940 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs219150341
MGI SNP Detail
Alliance Variant
Chr18:69586999 Rr540181 1911 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G G G G G G G A G G G G
rs50922467
MGI SNP Detail
Alliance Variant
Chr18:69587050 Rr540181 1860 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A G A A G A
rs258703496
MGI SNP Detail
Alliance Variant
Chr18:69587136 Rr540181 1774 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222894534
MGI SNP Detail
Alliance Variant
Chr18:69587159 Rr540181 1751 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs245610146
MGI SNP Detail
Alliance Variant
Chr18:69587165 Rr540181 1745 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263422370
MGI SNP Detail
Alliance Variant
Chr18:69587181 Rr540181 1729 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231721698
MGI SNP Detail
Alliance Variant
Chr18:69587196 Rr540181 1714 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49857634
MGI SNP Detail
Alliance Variant
Chr18:69587262 Rr540181 1648 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T T T T T T T G T T T T T T T T
rs45651257
MGI SNP Detail
Alliance Variant
Chr18:69587356 Rr540181 1554 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G A G
rs258713289
MGI SNP Detail
Alliance Variant
Chr18:69587458 Rr540181 1452 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224221806
MGI SNP Detail
Alliance Variant
Chr18:69587474 Rr540181 1436 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242154254
MGI SNP Detail
Alliance Variant
Chr18:69587502 Rr540181 1408 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215144926
MGI SNP Detail
Alliance Variant
Chr18:69587509 Rr540181 1401 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236220045
MGI SNP Detail
Alliance Variant
Chr18:69587517 Rr540181 1393 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258203460
MGI SNP Detail
Alliance Variant
Chr18:69587525 Rr540181 1385 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs215871967
MGI SNP Detail
Alliance Variant
Chr18:69587566 Rr540181 1344 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236457460
MGI SNP Detail
Alliance Variant
Chr18:69587637 Rr540181 1273 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs254607351
MGI SNP Detail
Alliance Variant
Chr18:69587640 Rr540181 1270 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs218987534
MGI SNP Detail
Alliance Variant
Chr18:69587647 Rr540181 1263 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs230143119
MGI SNP Detail
Alliance Variant
Chr18:69587704 Rr540181 1206 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs47990805
MGI SNP Detail
Alliance Variant
Chr18:69587721 Rr540181 1189 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C T C C T C
rs49578539
MGI SNP Detail
Alliance Variant
Chr18:69587746 Rr540181 1164 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T C T T T C T T C T
rs246918881
MGI SNP Detail
Alliance Variant
Chr18:69587759 Rr540181 1151 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265599820
MGI SNP Detail
Alliance Variant
Chr18:69587840 Rr540181 1070 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs50265059
MGI SNP Detail
Alliance Variant
Chr18:69587842 Rr540181 1068 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T T T T T T T A T T T T T T T T
rs241212772
MGI SNP Detail
Alliance Variant
Chr18:69587892 Rr540181 1018 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs587498176
MGI SNP Detail
Alliance Variant
Chr18:69587896 Rr540181 1014 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs580176456
MGI SNP Detail
Alliance Variant
Chr18:69587900 Rr540181 1010 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs47411767
MGI SNP Detail
Alliance Variant
Chr18:69587918 Rr540181 992 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A T A A T A
rs224064252
MGI SNP Detail
Alliance Variant
Chr18:69587939 Rr540181 971 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583625780
MGI SNP Detail
Alliance Variant
Chr18:69587975 Rr540181 935 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs47437911
MGI SNP Detail
Alliance Variant
Chr18:69588008 Rr540181 902 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G C G G C G
rs30305451
MGI SNP Detail
Alliance Variant
Chr18:69588045 Rr540181 865 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C T T T C T T T T T T T T T T T
rs48731655
MGI SNP Detail
Alliance Variant
Chr18:69588137 Rr540181 773 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A G A A A A A A A A
rs253191921
MGI SNP Detail
Alliance Variant
Chr18:69588210 Rr540181 700 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs45946764
MGI SNP Detail
Alliance Variant
Chr18:69588320 Rr540181 590 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G A G G A G
rs236470706
MGI SNP Detail
Alliance Variant
Chr18:69588328 Rr540181 582 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A C A A A A A A C A A A A A A A C A A A A
rs248057523
MGI SNP Detail
Alliance Variant
Chr18:69588445 Rr540181 465 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs213074126
MGI SNP Detail
Alliance Variant
Chr18:69588490 Rr540181 420 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs52133162
MGI SNP Detail
Alliance Variant
Chr18:69588620 Rr540181 290 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T C T T T C T T C T
rs262538677
MGI SNP Detail
Alliance Variant
Chr18:69588622 Rr540181 288 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52201692
MGI SNP Detail
Alliance Variant
Chr18:69588642 Rr540181 268 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C T C C T C
rs51159508
MGI SNP Detail
Alliance Variant
Chr18:69588809 Rr540181 101 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G A G G G G G G G G
rs259009767
MGI SNP Detail
Alliance Variant
Chr18:69588864 Rr540181 46 bp proximal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223044158
MGI SNP Detail
Alliance Variant
Chr18:69589051 Rr540181 within coordinates of
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs241265541
MGI SNP Detail
Alliance Variant
Chr18:69589124 Rr540181 66 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs252402272
MGI SNP Detail
Alliance Variant
Chr18:69589233 Rr540181 175 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs218369233
MGI SNP Detail
Alliance Variant
Chr18:69589343 Rr540181 285 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240949138
MGI SNP Detail
Alliance Variant
Chr18:69589352 Rr540181 294 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265224286
MGI SNP Detail
Alliance Variant
Chr18:69589368 Rr540181 310 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229758354
MGI SNP Detail
Alliance Variant
Chr18:69589391 Rr540181 333 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49020558
MGI SNP Detail
Alliance Variant
Chr18:69589425 Rr540181 367 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T T T T T T T A T T T T T T T T
rs263173542
MGI SNP Detail
Alliance Variant
Chr18:69589466 Rr540181 408 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs45726863
MGI SNP Detail
Alliance Variant
Chr18:69589601 Rr540181 543 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T C T T T C T T C T
rs247956483
MGI SNP Detail
Alliance Variant
Chr18:69589614 Rr540181 556 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48254767
MGI SNP Detail
Alliance Variant
Chr18:69589648 Rr540181 590 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C T C C T C
rs47858661
MGI SNP Detail
Alliance Variant
Chr18:69589685 Rr540181 627 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C A C C C A C C A C
rs251720313
MGI SNP Detail
Alliance Variant
Chr18:69589689 Rr540181 631 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214342528
MGI SNP Detail
Alliance Variant
Chr18:69589809 Rr540181 751 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs238965037
MGI SNP Detail
Alliance Variant
Chr18:69589868 Rr540181 810 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C
rs263032505
MGI SNP Detail
Alliance Variant
Chr18:69589939 Rr540181 881 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs217494728
MGI SNP Detail
Alliance Variant
Chr18:69589943 Rr540181 885 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs234785276
MGI SNP Detail
Alliance Variant
Chr18:69589970 Rr540181 912 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249272738
MGI SNP Detail
Alliance Variant
Chr18:69590088 Rr540181 1030 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47030579
MGI SNP Detail
Alliance Variant
Chr18:69590091 Rr540181 1033 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C A C
rs51108225
MGI SNP Detail
Alliance Variant
Chr18:69590178 Rr540181 1120 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A G A A A G A A G A
rs257653328
MGI SNP Detail
Alliance Variant
Chr18:69590179 Rr540181 1121 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G C G G G G
rs221796021
MGI SNP Detail
Alliance Variant
Chr18:69590180 Rr540181 1122 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs51526668
MGI SNP Detail
Alliance Variant
Chr18:69590227 Rr540181 1169 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G A G G G A G G A G
rs258997288
MGI SNP Detail
Alliance Variant
Chr18:69590257 Rr540181 1199 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50646386
MGI SNP Detail
Alliance Variant
Chr18:69590258 Rr540181 1200 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G A G G G A G G A G
rs242012312
MGI SNP Detail
Alliance Variant
Chr18:69590278 Rr540181 1220 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46983574
MGI SNP Detail
Alliance Variant
Chr18:69590370 Rr540181 1312 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T T T T T T T G T T T G T T G T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224288971
MGI SNP Detail
Alliance Variant
Chr18:69590390 Rr540181 1332 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs51525253
MGI SNP Detail
Alliance Variant
Chr18:69590391 Rr540181 1333 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T T T T T T T C T T T C T T C T
rs214043433
MGI SNP Detail
Alliance Variant
Chr18:69590436 Rr540181 1378 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233280134
MGI SNP Detail
Alliance Variant
Chr18:69590460 Rr540181 1402 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49627550
MGI SNP Detail
Alliance Variant
Chr18:69590465 Rr540181 1407 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A A A
rs217543598
MGI SNP Detail
Alliance Variant
Chr18:69590561 Rr540181 1503 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs234644340
MGI SNP Detail
Alliance Variant
Chr18:69590567 Rr540181 1509 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs586665380
MGI SNP Detail
Alliance Variant
Chr18:69590681 Rr540181 1623 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584194559
MGI SNP Detail
Alliance Variant
Chr18:69590813 Rr540181 1755 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586674329
MGI SNP Detail
Alliance Variant
Chr18:69590865 Rr540181 1807 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580731433
MGI SNP Detail
Alliance Variant
Chr18:69590899 Rr540181 1841 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G
rs585296616
MGI SNP Detail
Alliance Variant
Chr18:69590919 Rr540181 1861 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A G A A A A A A A A A A A
rs579225147
MGI SNP Detail
Alliance Variant
Chr18:69590954 Rr540181 1896 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs249282585
MGI SNP Detail
Alliance Variant
Chr18:69590980 Rr540181 1922 bp distal
Tcf4 Intron
Tcf4 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
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Showing SNP(s) 1 - 89 of 89

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory

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