About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Rr542378
regulatory region 542378
MGI:8004510

<< first < prev1 next > last >>
Showing SNP(s) 1 - 56 of 56

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250703078
MGI SNP Detail		 Chr19:3370331 Rr542375 within coordinates of
Rr542378 1932 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219594360
MGI SNP Detail		 Chr19:3370338 Rr542375 within coordinates of
Rr542378 1925 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235719639
MGI SNP Detail		 Chr19:3370368 Rr542375 within coordinates of
Rr542378 1895 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261016823
MGI SNP Detail		 Chr19:3370376 Rr542375 within coordinates of
Rr542378 1887 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238097894
MGI SNP Detail		 Chr19:3370567 Rr542375 within coordinates of
Rr542378 1696 bp proximal
 SNP A/G G A
rs586427058
MGI SNP Detail		 Chr19:3370637 Rr542375 within coordinates of
Rr542378 1626 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs250212469
MGI SNP Detail		 Chr19:3370661 Rr542375 within coordinates of
Rr542378 1602 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C A C C C C A C C A C C C C C A C
rs580843725
MGI SNP Detail		 Chr19:3370666 Rr542375 within coordinates of
Rr542378 1597 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A C C C A A A C A A A A C C C A A A C A A A A A A C A A A A A A A A A A A A
rs260021254
MGI SNP Detail		 Chr19:3370791 Rr542375 within coordinates of
Rr542378 1472 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs220957084
MGI SNP Detail		 Chr19:3370914 Rr542375 within coordinates of
Rr542378 1349 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239700884
MGI SNP Detail		 Chr19:3370991 Rr542375 within coordinates of
Rr542378 1272 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257559238
MGI SNP Detail		 Chr19:3371137 Rr542378 1126 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs31192216
MGI SNP Detail		 Chr19:3371186 Rr542378 1077 bp proximal
 SNP G/T G G G T
rs387416582
MGI SNP Detail		 Chr19:3371191 Rr542378 1072 bp proximal
 SNP G/T G G G G G G T T G G G G G G G G T T T T T G T G G T G T G T G T G G T G T T G T T T G G G G T T
rs578365095
MGI SNP Detail		 Chr19:3371196 Rr542378 1067 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G T G G G G T G G G G G T T
rs582940877
MGI SNP Detail		 Chr19:3371201 Rr542378 1062 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G T T T T G G G G G G G G G G G G G G G G G G G T G G G G G
rs584846699
MGI SNP Detail		 Chr19:3371206 Rr542378 1057 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs387763935
MGI SNP Detail		 Chr19:3371249 Rr542378 1014 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C T C C C C C T
rs224862962
MGI SNP Detail		 Chr19:3371299 Rr542377 within coordinates of
Rr542378 964 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249068143
MGI SNP Detail		 Chr19:3371347 Rr542377 within coordinates of
Rr542378 916 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266067702
MGI SNP Detail		 Chr19:3371384 Rr542377 within coordinates of
Rr542378 879 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232927526
MGI SNP Detail		 Chr19:3371454 Rr542377 within coordinates of
Rr542378 809 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs257797806
MGI SNP Detail		 Chr19:3371599 Rr542377 within coordinates of
Rr542378 664 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214887619
MGI SNP Detail		 Chr19:3371703 Rr542377 within coordinates of
Rr542378 560 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231878573
MGI SNP Detail		 Chr19:3371825 Rr542377 within coordinates of
Rr542378 438 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244888380
MGI SNP Detail		 Chr19:3371923 Rr542377 within coordinates of
Rr542378 340 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs214017950
MGI SNP Detail		 Chr19:3371946 Rr542377 within coordinates of
Rr542378 317 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237461669
MGI SNP Detail		 Chr19:3372188 Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 75 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs255776801
MGI SNP Detail
Alliance Variant		 Chr19:3372388 Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 104 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219276543
MGI SNP Detail
Alliance Variant		 Chr19:3372402 Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 118 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239673318
MGI SNP Detail
Alliance Variant		 Chr19:3372436 Cpt1a Coding-NonSynonymous
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 152 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G T G G G G G G G G G G G G
rs253640062
MGI SNP Detail
Alliance Variant		 Chr19:3372448 Cpt1a Coding-NonSynonymous
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 164 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255141175
MGI SNP Detail
Alliance Variant		 Chr19:3372512 Cpgi10363 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 228 bp distal
 SNP A/G G A
rs218467991
MGI SNP Detail
Alliance Variant		 Chr19:3372570 Cpgi10363 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 286 bp distal
 SNP C/T T C
rs251180042
MGI SNP Detail
Alliance Variant		 Chr19:3372594 Cpgi10363 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 310 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221550687
MGI SNP Detail
Alliance Variant		 Chr19:3372683 Cpgi10363 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 399 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs243811489
MGI SNP Detail
Alliance Variant		 Chr19:3372711 Cpgi10363 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 427 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582206126
MGI SNP Detail
Alliance Variant		 Chr19:3372765 Cpgi10363 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 481 bp distal
Rr542379 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs264365623
MGI SNP Detail
Alliance Variant		 Chr19:3372771 Cpgi10363 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 487 bp distal
Rr542379 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233747348
MGI SNP Detail
Alliance Variant		 Chr19:3372883 Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 599 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs239785059
MGI SNP Detail
Alliance Variant		 Chr19:3372923 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 639 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257025682
MGI SNP Detail
Alliance Variant		 Chr19:3373006 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 722 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225782765
MGI SNP Detail
Alliance Variant		 Chr19:3373038 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 754 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs243550458
MGI SNP Detail
Alliance Variant		 Chr19:3373069 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 785 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213965828
MGI SNP Detail
Alliance Variant		 Chr19:3373070 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 786 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs229334432
MGI SNP Detail
Alliance Variant		 Chr19:3373168 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542377 within coordinates of
Rr542378 884 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs253085097
MGI SNP Detail
Alliance Variant		 Chr19:3373296 Cpgi10364 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542378 1012 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C
rs219628374
MGI SNP Detail
Alliance Variant		 Chr19:3373305 Cpgi10364 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542378 1021 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G
rs242468626
MGI SNP Detail
Alliance Variant		 Chr19:3373322 Cpgi10364 within coordinates of
Cpt1a Intron
Cpt1a mRNA-UTR
Gm58963 within coordinates of
Rr542378 1038 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253769311
MGI SNP Detail
Alliance Variant		 Chr19:3373469 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542378 1185 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215381106
MGI SNP Detail
Alliance Variant		 Chr19:3373578 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542378 1294 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232925731
MGI SNP Detail
Alliance Variant		 Chr19:3373638 Cpgi10364 within coordinates of
Cpt1a Intron
Gm58963 within coordinates of
Rr542378 1354 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251303102
MGI SNP Detail
Alliance Variant		 Chr19:3373871 Cpgi10364 within coordinates of
Cpt1a Intron
Rr542378 1587 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220980601
MGI SNP Detail
Alliance Variant		 Chr19:3373986 Cpgi10364 within coordinates of
Cpt1a Intron
Rr394044 within coordinates of
Rr542378 1702 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs241163146
MGI SNP Detail
Alliance Variant		 Chr19:3374062 Cpgi10364 within coordinates of
Cpt1a Intron
Rr394044 within coordinates of
Rr542378 1778 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs264225213
MGI SNP Detail
Alliance Variant		 Chr19:3374138 Cpgi10364 within coordinates of
Cpt1a Intron
Rr394044 within coordinates of
Rr542378 1854 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 56 of 56
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory