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Mouse SNP Summary
Symbol
Name
ID
Rr542978
regulatory region 542978
MGI:8005110

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Showing SNP(s) 1 - 56 of 56

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579640203
MGI SNP Detail
Alliance Variant
Chr19:5342967 Rr542978 1828 bp proximal
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231606086
MGI SNP Detail
Alliance Variant
Chr19:5343068 Rr542978 1727 bp proximal
Sf3b2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262536219
MGI SNP Detail
Alliance Variant
Chr19:5343120 Rr542978 1675 bp proximal
Sf3b2 Coding-Synonymous
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220840039
MGI SNP Detail
Alliance Variant
Chr19:5343186 Rr542978 1609 bp proximal
Sf3b2 Coding-Synonymous
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237466105
MGI SNP Detail
Alliance Variant
Chr19:5343216 Rr542978 1579 bp proximal
Sf3b2 Coding-Synonymous
Tssr157565 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260564359
MGI SNP Detail
Alliance Variant
Chr19:5343402 Rr542978 1393 bp proximal
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223753007
MGI SNP Detail
Alliance Variant
Chr19:5343412 Rr542978 1383 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs242481427
MGI SNP Detail
Alliance Variant
Chr19:5343482 Rr542978 1313 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258753291
MGI SNP Detail
Alliance Variant
Chr19:5343800 Rr542978 995 bp proximal
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221469687
MGI SNP Detail
Alliance Variant
Chr19:5343901 Rr542978 894 bp proximal
Sf3b2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242887701
MGI SNP Detail
Alliance Variant
Chr19:5343931 Rr542978 864 bp proximal
Sf3b2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265223263
MGI SNP Detail
Alliance Variant
Chr19:5343978 Rr542978 817 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs227545889
MGI SNP Detail
Alliance Variant
Chr19:5344046 Rr542978 749 bp proximal
Sf3b2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs36963645
MGI SNP Detail
Alliance Variant
Chr19:5344050 Rr542978 745 bp proximal
Sf3b2 Intron
SNP C/T T T T T T T T T T T C T T C T
rs259007049
MGI SNP Detail
Alliance Variant
Chr19:5344077 Rr542978 718 bp proximal
Sf3b2 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229185870
MGI SNP Detail
Alliance Variant
Chr19:5344153 Rr542978 642 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245230193
MGI SNP Detail
Alliance Variant
Chr19:5344159 Rr542978 636 bp proximal
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs38024541
MGI SNP Detail
Alliance Variant
Chr19:5344160 Rr542978 635 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A G A A G A
rs231482259
MGI SNP Detail
Alliance Variant
Chr19:5344225 Rr542978 570 bp proximal
Sf3b2 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs36642628
MGI SNP Detail
Alliance Variant
Chr19:5344311 Rr542978 484 bp proximal
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C T C
rs36488492
MGI SNP Detail
Alliance Variant
Chr19:5344459 Rr542978 336 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A G A A G A
rs235677008
MGI SNP Detail
Alliance Variant
Chr19:5344485 Rr542978 310 bp proximal
Sf3b2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263904109
MGI SNP Detail
Alliance Variant
Chr19:5344612 Rr542978 183 bp proximal
Sf3b2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223832723
MGI SNP Detail
Alliance Variant
Chr19:5344656 Rr542978 139 bp proximal
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234397090
MGI SNP Detail
Alliance Variant
Chr19:5344662 Rr542978 133 bp proximal
Sf3b2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253928316
MGI SNP Detail
Alliance Variant
Chr19:5344755 Rr542978 40 bp proximal
Sf3b2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs582861160
MGI SNP Detail
Alliance Variant
Chr19:5344834 Rr542978 within coordinates of
Sf3b2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs587507142
MGI SNP Detail
Alliance Variant
Chr19:5344950 Rr542978 within coordinates of
Sf3b2 Intron
SNP A/G A A A A A A A A A A A A G A A A A A A A A G A A A A A A A G A A G A A
rs221528378
MGI SNP Detail
Alliance Variant
Chr19:5345014 Rr542978 within coordinates of
Sf3b2 Intron
SNP G/T T T T T T T T T T T T T T T T T G G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs245572867
MGI SNP Detail
Alliance Variant
Chr19:5345090 Cpgi10439 within coordinates of
Rr370429 within coordinates of
Rr542978 within coordinates of
Sf3b2 Coding-Synonymous
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262669996
MGI SNP Detail
Alliance Variant
Chr19:5345164 Cpgi10439 within coordinates of
Rr370429 within coordinates of
Rr542978 within coordinates of
Sf3b2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs38293927
MGI SNP Detail
Alliance Variant
Chr19:5345339 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 64 bp distal
Sf3b2 Coding-Synonymous
SNP A/G A A A A A A A A A A A A A G A
rs242063470
MGI SNP Detail
Alliance Variant
Chr19:5345405 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 130 bp distal
Sf3b2 Coding-Synonymous
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258893244
MGI SNP Detail
Chr19:5345590 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 315 bp distal
Rr542980 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs37725446
MGI SNP Detail
Chr19:5345613 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 338 bp distal
Rr542980 within coordinates of
SNP C/T T T T T T T T T T T C T T T T
rs229102287
MGI SNP Detail
Chr19:5345636 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 361 bp distal
Rr542980 within coordinates of
Rr542981 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs245287257
MGI SNP Detail
Chr19:5345641 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 366 bp distal
Rr542980 within coordinates of
Rr542981 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258063083
MGI SNP Detail
Chr19:5345678 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 403 bp distal
Rr542982 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs230063991
MGI SNP Detail
Chr19:5345744 Cpgi10439 within coordinates of
Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 469 bp distal
Rr542982 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256310143
MGI SNP Detail
Chr19:5345932 Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 657 bp distal
Rr542982 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs212218151
MGI SNP Detail
Chr19:5345981 Gm50203 within coordinates of
Rr370429 within coordinates of
Rr542978 706 bp distal
Rr542982 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237383122
MGI SNP Detail
Chr19:5346124 Rr370429 within coordinates of
Rr542978 849 bp distal
Rr542982 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248165320
MGI SNP Detail
Chr19:5346472 Rr542978 1197 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs253986935
MGI SNP Detail
Chr19:5346708 Rr542978 1433 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs37113233
MGI SNP Detail
Chr19:5346780 Rr542978 1505 bp distal
SNP A/C C C C C C C C C C C A C C C C
rs213965499
MGI SNP Detail
Chr19:5346859 Rr542978 1584 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C C T C C C C
rs235877767
MGI SNP Detail
Chr19:5346912 Rr542978 1637 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262249280
MGI SNP Detail
Chr19:5346934 Rr542978 1659 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219893954
MGI SNP Detail
Chr19:5346964 Rr542978 1689 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30317985
MGI SNP Detail
Chr19:5346983 Rr542978 1708 bp distal
SNP G/T T T G G G T G T G T G G G G G T G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252457489
MGI SNP Detail
Chr19:5347051 Rr542978 1776 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs37021586
MGI SNP Detail
Chr19:5347075 Rr542978 1800 bp distal
SNP C/T C C C C C C C C C T C C C C C
rs222597857
MGI SNP Detail
Chr19:5347113 Rr542978 1838 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239063573
MGI SNP Detail
Chr19:5347132 Rr542978 1857 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs258077470
MGI SNP Detail
Chr19:5347144 Rr542978 1869 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230147847
MGI SNP Detail
Chr19:5347161 Rr542978 1886 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
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Showing SNP(s) 1 - 56 of 56

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory