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Mouse SNP Summary
Symbol
Name
ID 		Rr543778
regulatory region 543778
MGI:8005910

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264047703
MGI SNP Detail
Alliance Variant		 Chr19:8689306 Rr543778 1927 bp proximal
Slc3a2 Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs215294395
MGI SNP Detail
Alliance Variant		 Chr19:8689345 Rr543778 1888 bp proximal
Slc3a2 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240774964
MGI SNP Detail
Alliance Variant		 Chr19:8689355 Rr543778 1878 bp proximal
Slc3a2 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256871722
MGI SNP Detail
Alliance Variant		 Chr19:8689366 Rr405841 within coordinates of
Rr543778 1867 bp proximal
Slc3a2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30406192
MGI SNP Detail
Alliance Variant		 Chr19:8689377 Rr405841 within coordinates of
Rr543778 1856 bp proximal
Slc3a2 Intron
 SNP A/G A G
rs230270427
MGI SNP Detail
Alliance Variant		 Chr19:8689384 Rr405841 within coordinates of
Rr543778 1849 bp proximal
Slc3a2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249122497
MGI SNP Detail
Alliance Variant		 Chr19:8689387 Rr405841 within coordinates of
Rr543778 1846 bp proximal
Slc3a2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222320897
MGI SNP Detail
Alliance Variant		 Chr19:8689389 Rr405841 within coordinates of
Rr543778 1844 bp proximal
Slc3a2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248728602
MGI SNP Detail
Alliance Variant		 Chr19:8689414 Rr405841 within coordinates of
Rr543778 1819 bp proximal
Slc3a2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265536854
MGI SNP Detail
Alliance Variant		 Chr19:8689438 Rr405841 within coordinates of
Rr543778 1795 bp proximal
Slc3a2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225044336
MGI SNP Detail
Alliance Variant		 Chr19:8689446 Rr405841 within coordinates of
Rr543778 1787 bp proximal
Slc3a2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262871687
MGI SNP Detail
Alliance Variant		 Chr19:8689463 Rr405841 within coordinates of
Rr543778 1770 bp proximal
Slc3a2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224352751
MGI SNP Detail
Alliance Variant		 Chr19:8689477 Rr405841 within coordinates of
Rr543778 1756 bp proximal
Slc3a2 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243442356
MGI SNP Detail
Alliance Variant		 Chr19:8689483 Rr405841 within coordinates of
Rr543778 1750 bp proximal
Slc3a2 Intron
 SNP C/T T T T T T T T T T T T T T T T T C C T T T C T T T T C T T T T C T T T T T T C T T T T T T T T T T T T
rs256635923
MGI SNP Detail
Alliance Variant		 Chr19:8689496 Rr405841 within coordinates of
Rr543778 1737 bp proximal
Slc3a2 Intron
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs228556848
MGI SNP Detail
Alliance Variant		 Chr19:8689560 Rr405841 within coordinates of
Rr543778 1673 bp proximal
Slc3a2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254678992
MGI SNP Detail
Alliance Variant		 Chr19:8689570 Rr405841 within coordinates of
Rr543778 1663 bp proximal
Slc3a2 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs216096219
MGI SNP Detail
Alliance Variant		 Chr19:8689704 Rr543778 1529 bp proximal
Slc3a2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238359019
MGI SNP Detail
Alliance Variant		 Chr19:8689733 Rr543778 1500 bp proximal
Slc3a2 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C A C C C A C C C C C C A C C C C C C C A C C C C
rs254803383
MGI SNP Detail
Alliance Variant		 Chr19:8689814 Rr543778 1419 bp proximal
Slc3a2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214196611
MGI SNP Detail
Alliance Variant		 Chr19:8689882 Rr543778 1351 bp proximal
Slc3a2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229728556
MGI SNP Detail
Alliance Variant		 Chr19:8689899 Rr543778 1334 bp proximal
Slc3a2 Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs30320250
MGI SNP Detail
Alliance Variant		 Chr19:8689900 Rr543778 1333 bp proximal
Slc3a2 Intron
 SNP A/C A A A C
rs222186024
MGI SNP Detail
Alliance Variant		 Chr19:8690148 Rr543778 1085 bp proximal
Slc3a2 Coding-NonSynonymous
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243549480
MGI SNP Detail
Alliance Variant		 Chr19:8690214 Rr543778 1019 bp proximal
Slc3a2 Coding-Synonymous
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259020886
MGI SNP Detail
Alliance Variant		 Chr19:8690280 Rr543778 953 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158033 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225603767
MGI SNP Detail
Alliance Variant		 Chr19:8690339 Rr543776 within coordinates of
Rr543778 894 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158034 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243249279
MGI SNP Detail
Alliance Variant		 Chr19:8690356 Rr543776 within coordinates of
Rr543778 877 bp proximal
Slc3a2 Intron
Tssr158034 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs37107086
MGI SNP Detail
Alliance Variant		 Chr19:8690360 Rr543776 within coordinates of
Rr543778 873 bp proximal
Slc3a2 Intron
Tssr158034 within coordinates of
 SNP C/T C T T C
rs218334805
MGI SNP Detail
Alliance Variant		 Chr19:8690432 Rr543776 within coordinates of
Rr543778 801 bp proximal
Slc3a2 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238238087
MGI SNP Detail
Alliance Variant		 Chr19:8690456 Rr543776 within coordinates of
Rr543778 777 bp proximal
Slc3a2 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259964307
MGI SNP Detail
Alliance Variant		 Chr19:8690597 Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543778 636 bp proximal
Slc3a2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263177393
MGI SNP Detail
Alliance Variant		 Chr19:8690637 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543778 596 bp proximal
Slc3a2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31032118
MGI SNP Detail
Alliance Variant		 Chr19:8690670 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543778 563 bp proximal
Slc3a2 Intron
 SNP A/G A G A
rs250410023
MGI SNP Detail
Alliance Variant		 Chr19:8690713 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543778 520 bp proximal
Slc3a2 Coding-NonSynonymous
Slc3a2 Coding-Synonymous
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30312834
MGI SNP Detail
Alliance Variant		 Chr19:8690726 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543778 507 bp proximal
Slc3a2 Coding-NonSynonymous
Tssr158035 within coordinates of
 SNP C/G C C C G
rs13470234
MGI SNP Detail
Alliance Variant		 Chr19:8690905 Cpgi10567 within coordinates of
Rr543778 328 bp proximal
Slc3a2 Coding-Synonymous
 SNP G/T T T T T T T T T T T T T T T T T G G T G T T G T T T T G T G T T T G T T T T T T G T T T T T T T G T T T G
rs242852043
MGI SNP Detail
Alliance Variant		 Chr19:8691019 Cpgi10567 within coordinates of
Rr543778 214 bp proximal
Slc3a2 Coding-Synonymous
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30847429
MGI SNP Detail
Alliance Variant		 Chr19:8691029 Cpgi10567 within coordinates of
Rr543778 204 bp proximal
Slc3a2 Coding-NonSynonymous
 SNP G/T T T T G
rs240605446
MGI SNP Detail
Alliance Variant		 Chr19:8691347 Cpgi10567 within coordinates of
Rr543778 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263033230
MGI SNP Detail
Alliance Variant		 Chr19:8691600 Rr543778 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T C C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217371966
MGI SNP Detail
Alliance Variant		 Chr19:8691720 Rr543778 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238540263
MGI SNP Detail
Alliance Variant		 Chr19:8691722 Rr543778 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30797675
MGI SNP Detail
Alliance Variant		 Chr19:8691814 Rr543778 81 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158043 within coordinates of
 SNP A/G A A A G
rs218211649
MGI SNP Detail
Alliance Variant		 Chr19:8691860 Rr543778 127 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585573691
MGI SNP Detail
Alliance Variant		 Chr19:8691962 Rr543778 229 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs238096545
MGI SNP Detail
Alliance Variant		 Chr19:8692118 Rr543778 385 bp distal
Rr543780 within coordinates of
Rr543781 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254603044
MGI SNP Detail
Alliance Variant		 Chr19:8692132 Rr543778 399 bp distal
Rr543780 within coordinates of
Rr543781 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227340795
MGI SNP Detail
Alliance Variant		 Chr19:8692173 Rr543778 440 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/C C C C C C C C C C C C C C C C C A A C A C C A C C C C A C A C C C A C C C C C C A C C C C C C C A C C C A
rs248222240
MGI SNP Detail
Alliance Variant		 Chr19:8692188 Rr543778 455 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265466402
MGI SNP Detail
Alliance Variant		 Chr19:8692209 Rr543778 476 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232373986
MGI SNP Detail
Alliance Variant		 Chr19:8692330 Rr543778 597 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs237552357
MGI SNP Detail
Alliance Variant		 Chr19:8692517 Rr543778 784 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255983220
MGI SNP Detail
Alliance Variant		 Chr19:8692559 Rr543778 826 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580598758
MGI SNP Detail
Alliance Variant		 Chr19:8692682 Rr543778 949 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223199748
MGI SNP Detail
Alliance Variant		 Chr19:8692691 Rr543778 958 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242719135
MGI SNP Detail
Alliance Variant		 Chr19:8692708 Rr543778 975 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs216485204
MGI SNP Detail
Alliance Variant		 Chr19:8692727 Rr543778 994 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs234697351
MGI SNP Detail
Alliance Variant		 Chr19:8692809 Rr543778 1076 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252604285
MGI SNP Detail
Alliance Variant		 Chr19:8692827 Rr543778 1094 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217482092
MGI SNP Detail
Alliance Variant		 Chr19:8692853 Rr543778 1120 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236600576
MGI SNP Detail
Alliance Variant		 Chr19:8692968 Rr543778 1235 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252415289
MGI SNP Detail
Alliance Variant		 Chr19:8692975 Rr543778 1242 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212394680
MGI SNP Detail
Alliance Variant		 Chr19:8693019 Rr543778 1286 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230743658
MGI SNP Detail
Alliance Variant		 Chr19:8693022 Rr543778 1289 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254454487
MGI SNP Detail
Alliance Variant		 Chr19:8693024 Rr543778 1291 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226959835
MGI SNP Detail
Alliance Variant		 Chr19:8693063 Rr543778 1330 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582755528
MGI SNP Detail
Alliance Variant		 Chr19:8693074 Rr543778 1341 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs247978562
MGI SNP Detail
Alliance Variant		 Chr19:8693078 Rr543778 1345 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs586323546
MGI SNP Detail
Alliance Variant		 Chr19:8693099 Rr543778 1366 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258570787
MGI SNP Detail
Alliance Variant		 Chr19:8693150 Rr543778 1417 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225034750
MGI SNP Detail
Alliance Variant		 Chr19:8693161 Rr543778 1428 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579732850
MGI SNP Detail
Alliance Variant		 Chr19:8693169 Rr543778 1436 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237362856
MGI SNP Detail
Alliance Variant		 Chr19:8693213 Rr543778 1480 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
rs256289596
MGI SNP Detail
Alliance Variant		 Chr19:8693318 Rr543778 1585 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223463108
MGI SNP Detail
Alliance Variant		 Chr19:8693346 Rr543778 1613 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236387271
MGI SNP Detail
Alliance Variant		 Chr19:8693379 Rr543778 1646 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158044 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265831684
MGI SNP Detail
Alliance Variant		 Chr19:8693388 Rr543778 1655 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs233693537
MGI SNP Detail
Alliance Variant		 Chr19:8693481 Rr543778 1748 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256954678
MGI SNP Detail
Alliance Variant		 Chr19:8693540 Rr543778 1807 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs216366155
MGI SNP Detail
Alliance Variant		 Chr19:8693546 Rr543778 1813 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226055091
MGI SNP Detail
Alliance Variant		 Chr19:8693599 Rr543778 1866 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245947979
MGI SNP Detail
Alliance Variant		 Chr19:8693602 Rr543778 1869 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212458261
MGI SNP Detail
Alliance Variant		 Chr19:8693625 Rr543778 1892 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231115534
MGI SNP Detail
Alliance Variant		 Chr19:8693632 Rr543778 1899 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248115542
MGI SNP Detail
Alliance Variant		 Chr19:8693644 Rr543778 1911 bp distal
Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 86 of 86
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory
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