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Mouse SNP Summary
Symbol
Name
ID
Rr543780
regulatory region 543780
MGI:8005912

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222186024
MGI SNP Detail
Alliance Variant
Chr19:8690148 Rr543780 1887 bp proximal
Slc3a2 Coding-NonSynonymous
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243549480
MGI SNP Detail
Alliance Variant
Chr19:8690214 Rr543780 1821 bp proximal
Slc3a2 Coding-Synonymous
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259020886
MGI SNP Detail
Alliance Variant
Chr19:8690280 Rr543780 1755 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158033 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225603767
MGI SNP Detail
Alliance Variant
Chr19:8690339 Rr543776 within coordinates of
Rr543780 1696 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158034 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243249279
MGI SNP Detail
Alliance Variant
Chr19:8690356 Rr543776 within coordinates of
Rr543780 1679 bp proximal
Slc3a2 Intron
Tssr158034 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs37107086
MGI SNP Detail
Alliance Variant
Chr19:8690360 Rr543776 within coordinates of
Rr543780 1675 bp proximal
Slc3a2 Intron
Tssr158034 within coordinates of
SNP C/T C T T C
rs218334805
MGI SNP Detail
Alliance Variant
Chr19:8690432 Rr543776 within coordinates of
Rr543780 1603 bp proximal
Slc3a2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238238087
MGI SNP Detail
Alliance Variant
Chr19:8690456 Rr543776 within coordinates of
Rr543780 1579 bp proximal
Slc3a2 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259964307
MGI SNP Detail
Alliance Variant
Chr19:8690597 Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543780 1438 bp proximal
Slc3a2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263177393
MGI SNP Detail
Alliance Variant
Chr19:8690637 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543780 1398 bp proximal
Slc3a2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31032118
MGI SNP Detail
Alliance Variant
Chr19:8690670 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543780 1365 bp proximal
Slc3a2 Intron
SNP A/G A G A
rs250410023
MGI SNP Detail
Alliance Variant
Chr19:8690713 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543780 1322 bp proximal
Slc3a2 Coding-NonSynonymous
Slc3a2 Coding-Synonymous
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30312834
MGI SNP Detail
Alliance Variant
Chr19:8690726 Cpgi10567 within coordinates of
Rr405842 within coordinates of
Rr543776 within coordinates of
Rr543780 1309 bp proximal
Slc3a2 Coding-NonSynonymous
Tssr158035 within coordinates of
SNP C/G C C C G
rs13470234
MGI SNP Detail
Alliance Variant
Chr19:8690905 Cpgi10567 within coordinates of
Rr543780 1130 bp proximal
Slc3a2 Coding-Synonymous
SNP G/T T T T T T T T T T T T T T T T T G G T G T T G T T T T G T G T T T G T T T T T T G T T T T T T T G T T T G
rs242852043
MGI SNP Detail
Alliance Variant
Chr19:8691019 Cpgi10567 within coordinates of
Rr543780 1016 bp proximal
Slc3a2 Coding-Synonymous
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30847429
MGI SNP Detail
Alliance Variant
Chr19:8691029 Cpgi10567 within coordinates of
Rr543780 1006 bp proximal
Slc3a2 Coding-NonSynonymous
SNP G/T T T T G
rs240605446
MGI SNP Detail
Alliance Variant
Chr19:8691347 Cpgi10567 within coordinates of
Rr543778 within coordinates of
Rr543780 688 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263033230
MGI SNP Detail
Alliance Variant
Chr19:8691600 Rr543778 within coordinates of
Rr543780 435 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T C C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217371966
MGI SNP Detail
Alliance Variant
Chr19:8691720 Rr543778 within coordinates of
Rr543780 315 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238540263
MGI SNP Detail
Alliance Variant
Chr19:8691722 Rr543778 within coordinates of
Rr543780 313 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30797675
MGI SNP Detail
Alliance Variant
Chr19:8691814 Rr543780 221 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158043 within coordinates of
SNP A/G A A A G
rs218211649
MGI SNP Detail
Alliance Variant
Chr19:8691860 Rr543780 175 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585573691
MGI SNP Detail
Alliance Variant
Chr19:8691962 Rr543780 73 bp proximal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs238096545
MGI SNP Detail
Alliance Variant
Chr19:8692118 Rr543780 within coordinates of
Rr543781 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254603044
MGI SNP Detail
Alliance Variant
Chr19:8692132 Rr543780 within coordinates of
Rr543781 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227340795
MGI SNP Detail
Alliance Variant
Chr19:8692173 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C A A C A C C A C C C C A C A C C C A C C C C C C A C C C C C C C A C C C A
rs248222240
MGI SNP Detail
Alliance Variant
Chr19:8692188 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs265466402
MGI SNP Detail
Alliance Variant
Chr19:8692209 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232373986
MGI SNP Detail
Alliance Variant
Chr19:8692330 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs237552357
MGI SNP Detail
Alliance Variant
Chr19:8692517 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255983220
MGI SNP Detail
Alliance Variant
Chr19:8692559 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580598758
MGI SNP Detail
Alliance Variant
Chr19:8692682 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223199748
MGI SNP Detail
Alliance Variant
Chr19:8692691 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242719135
MGI SNP Detail
Alliance Variant
Chr19:8692708 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs216485204
MGI SNP Detail
Alliance Variant
Chr19:8692727 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs234697351
MGI SNP Detail
Alliance Variant
Chr19:8692809 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252604285
MGI SNP Detail
Alliance Variant
Chr19:8692827 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217482092
MGI SNP Detail
Alliance Variant
Chr19:8692853 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236600576
MGI SNP Detail
Alliance Variant
Chr19:8692968 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252415289
MGI SNP Detail
Alliance Variant
Chr19:8692975 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212394680
MGI SNP Detail
Alliance Variant
Chr19:8693019 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230743658
MGI SNP Detail
Alliance Variant
Chr19:8693022 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254454487
MGI SNP Detail
Alliance Variant
Chr19:8693024 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226959835
MGI SNP Detail
Alliance Variant
Chr19:8693063 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582755528
MGI SNP Detail
Alliance Variant
Chr19:8693074 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs247978562
MGI SNP Detail
Alliance Variant
Chr19:8693078 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs586323546
MGI SNP Detail
Alliance Variant
Chr19:8693099 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258570787
MGI SNP Detail
Alliance Variant
Chr19:8693150 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225034750
MGI SNP Detail
Alliance Variant
Chr19:8693161 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579732850
MGI SNP Detail
Alliance Variant
Chr19:8693169 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237362856
MGI SNP Detail
Alliance Variant
Chr19:8693213 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
rs256289596
MGI SNP Detail
Alliance Variant
Chr19:8693318 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223463108
MGI SNP Detail
Alliance Variant
Chr19:8693346 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236387271
MGI SNP Detail
Alliance Variant
Chr19:8693379 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
Tssr158044 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265831684
MGI SNP Detail
Alliance Variant
Chr19:8693388 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs233693537
MGI SNP Detail
Alliance Variant
Chr19:8693481 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256954678
MGI SNP Detail
Alliance Variant
Chr19:8693540 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs216366155
MGI SNP Detail
Alliance Variant
Chr19:8693546 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226055091
MGI SNP Detail
Alliance Variant
Chr19:8693599 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245947979
MGI SNP Detail
Alliance Variant
Chr19:8693602 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212458261
MGI SNP Detail
Alliance Variant
Chr19:8693625 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231115534
MGI SNP Detail
Alliance Variant
Chr19:8693632 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248115542
MGI SNP Detail
Alliance Variant
Chr19:8693644 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219178544
MGI SNP Detail
Alliance Variant
Chr19:8693757 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238096891
MGI SNP Detail
Alliance Variant
Chr19:8693759 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263465891
MGI SNP Detail
Alliance Variant
Chr19:8693787 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222700590
MGI SNP Detail
Alliance Variant
Chr19:8693798 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs231330561
MGI SNP Detail
Alliance Variant
Chr19:8693849 Rr543780 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217966700
MGI SNP Detail
Alliance Variant
Chr19:8694254 Rr543780 71 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G G G G G G
rs236662353
MGI SNP Detail
Alliance Variant
Chr19:8694313 Rr543780 130 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs263881359
MGI SNP Detail
Alliance Variant
Chr19:8694316 Rr543780 133 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs226778888
MGI SNP Detail
Alliance Variant
Chr19:8694337 Rr543780 154 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244696941
MGI SNP Detail
Alliance Variant
Chr19:8694485 Rr543780 302 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs265660947
MGI SNP Detail
Alliance Variant
Chr19:8694493 Rr543780 310 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs225500137
MGI SNP Detail
Alliance Variant
Chr19:8694524 Rr543780 341 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs38656629
MGI SNP Detail
Alliance Variant
Chr19:8694556 Rr543780 373 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/G G G G G G G C G G G G
rs587055497
MGI SNP Detail
Alliance Variant
Chr19:8694568 Rr543780 385 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs246013810
MGI SNP Detail
Alliance Variant
Chr19:8694651 Rr543780 468 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256262617
MGI SNP Detail
Alliance Variant
Chr19:8694667 Rr543780 484 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225376386
MGI SNP Detail
Alliance Variant
Chr19:8694783 Rr543780 600 bp distal
Rr543784 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579685272
MGI SNP Detail
Alliance Variant
Chr19:8694912 Rr543780 729 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583677443
MGI SNP Detail
Alliance Variant
Chr19:8694933 Rr543780 750 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs259650350
MGI SNP Detail
Alliance Variant
Chr19:8694999 Rr543780 816 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219703049
MGI SNP Detail
Alliance Variant
Chr19:8695056 Rr543780 873 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240074318
MGI SNP Detail
Alliance Variant
Chr19:8695090 Rr543780 907 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253213731
MGI SNP Detail
Alliance Variant
Chr19:8695137 Rr543780 954 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213829535
MGI SNP Detail
Alliance Variant
Chr19:8695138 Rr543780 955 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs587254793
MGI SNP Detail
Alliance Variant
Chr19:8695196 Rr543780 1013 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232267347
MGI SNP Detail
Alliance Variant
Chr19:8695237 Rr543780 1054 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250410421
MGI SNP Detail
Alliance Variant
Chr19:8695253 Rr543780 1070 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217842746
MGI SNP Detail
Alliance Variant
Chr19:8695395 Rr543780 1212 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230562661
MGI SNP Detail
Alliance Variant
Chr19:8695396 Rr543780 1213 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49247794
MGI SNP Detail
Alliance Variant
Chr19:8695416 Rr543780 1233 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T C
rs226643313
MGI SNP Detail
Alliance Variant
Chr19:8695515 Rr543780 1332 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs247426395
MGI SNP Detail
Alliance Variant
Chr19:8695540 Rr543780 1357 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263399122
MGI SNP Detail
Alliance Variant
Chr19:8695563 Rr543780 1380 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581316688
MGI SNP Detail
Alliance Variant
Chr19:8695638 Rr543780 1455 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219395089
MGI SNP Detail
Alliance Variant
Chr19:8695647 Rr543780 1464 bp distal
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239481256
MGI SNP Detail
Alliance Variant
Chr19:8695728 Rr543780 1545 bp distal
Rr543785 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs256325338
MGI SNP Detail
Alliance Variant
Chr19:8695748 Rr543780 1565 bp distal
Rr543785 within coordinates of
Slc3a2 Intron
Slc3a2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 107

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory