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Mouse SNP Summary
Symbol
Name
ID 		Rr548380
regulatory region 548380
MGI:8010512

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211942386
MGI SNP Detail
Alliance Variant		 Chr19:45004745 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548376 within coordinates of
Rr548380 1917 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs580613251
MGI SNP Detail
Alliance Variant		 Chr19:45004776 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1886 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235236822
MGI SNP Detail
Alliance Variant		 Chr19:45004787 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1875 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263630586
MGI SNP Detail
Alliance Variant		 Chr19:45004900 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1762 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217063125
MGI SNP Detail
Alliance Variant		 Chr19:45004972 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Lzts2 Splice-Site
Rr548375 within coordinates of
Rr548380 1690 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233449834
MGI SNP Detail
Alliance Variant		 Chr19:45005098 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1564 bp proximal
 SNP A/G G G G G G G G G A G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253261950
MGI SNP Detail
Alliance Variant		 Chr19:45005114 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1548 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G G G G G G G G
rs222205269
MGI SNP Detail
Alliance Variant		 Chr19:45005172 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1490 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246319578
MGI SNP Detail
Alliance Variant		 Chr19:45005173 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548375 within coordinates of
Rr548380 1489 bp proximal
 SNP C C C C C C
rs30323713
MGI SNP Detail
Alliance Variant		 Chr19:45005340 Gm59111 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 1322 bp proximal
 SNP A/G G A
rs220342408
MGI SNP Detail
Alliance Variant		 Chr19:45005449 Gm59111 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548380 1213 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs242334165
MGI SNP Detail
Alliance Variant		 Chr19:45005450 Gm59111 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548380 1212 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T A T T T T T T A T T T T T T T A T T T T
rs259094782
MGI SNP Detail
Alliance Variant		 Chr19:45005649 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548380 1013 bp proximal
 SNP C/T T T T T T T T T T T C T T T T T T T T C T T T T C T T T T T T T T T T T T T T T T T T C T C T T C T
rs229342347
MGI SNP Detail
Alliance Variant		 Chr19:45005742 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548380 920 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239286005
MGI SNP Detail
Alliance Variant		 Chr19:45005751 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548380 911 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258111917
MGI SNP Detail
Alliance Variant		 Chr19:45005823 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548378 within coordinates of
Rr548380 839 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229859365
MGI SNP Detail
Alliance Variant		 Chr19:45005831 Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548378 within coordinates of
Rr548380 831 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256150696
MGI SNP Detail
Alliance Variant		 Chr19:45005843 Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548377 within coordinates of
Rr548378 within coordinates of
Rr548380 819 bp proximal
 SNP A/C A A A A A A A A A A C A A A A A A A C C C C A A C C A A A A A A A A A A A C A A A A C A A C A A C A
rs211886010
MGI SNP Detail
Alliance Variant		 Chr19:45005948 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 714 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228976819
MGI SNP Detail
Alliance Variant		 Chr19:45005952 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 710 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs247823976
MGI SNP Detail
Alliance Variant		 Chr19:45005958 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 704 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240058302
MGI SNP Detail
Alliance Variant		 Chr19:45006025 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 637 bp proximal
 SNP T T T
rs233503585
MGI SNP Detail
Alliance Variant		 Chr19:45006085 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 577 bp proximal
Tssr5531 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G A G G G
rs253294551
MGI SNP Detail
Alliance Variant		 Chr19:45006094 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 568 bp proximal
Tssr5531 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216302592
MGI SNP Detail
Alliance Variant		 Chr19:45006097 Cpgi10925 within coordinates of
Gm59112 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 565 bp proximal
Tssr5531 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236530874
MGI SNP Detail
Alliance Variant		 Chr19:45006242 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 420 bp proximal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs583730302
MGI SNP Detail
Alliance Variant		 Chr19:45006251 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 411 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs587413798
MGI SNP Detail
Alliance Variant		 Chr19:45006265 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 397 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579806425
MGI SNP Detail
Alliance Variant		 Chr19:45006266 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 396 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262605353
MGI SNP Detail
Alliance Variant		 Chr19:45006446 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 216 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220729106
MGI SNP Detail
Alliance Variant		 Chr19:45006447 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 215 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245337208
MGI SNP Detail
Alliance Variant		 Chr19:45006469 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548379 within coordinates of
Rr548380 193 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583435575
MGI SNP Detail
Alliance Variant		 Chr19:45006766 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252771311
MGI SNP Detail
Alliance Variant		 Chr19:45006783 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP C/G G G G C G G G C C C G G G G G G G G G G C G G C G G G
rs222860212
MGI SNP Detail
Alliance Variant		 Chr19:45006794 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP G/T T G T G T G G G
rs239324957
MGI SNP Detail
Alliance Variant		 Chr19:45006979 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs258154992
MGI SNP Detail
Alliance Variant		 Chr19:45006988 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230181407
MGI SNP Detail
Alliance Variant		 Chr19:45006993 Cpgi10925 within coordinates of
Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP C/T T T T T T T T T T T C C T T T T T T T T C C T T T T C T T T T T T T T T T T T T T T T T C T T T T T C T
rs244051102
MGI SNP Detail
Alliance Variant		 Chr19:45007210 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C C G C C C C C C C C C C C C C C C C C C C
rs264643023
MGI SNP Detail
Alliance Variant		 Chr19:45007217 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228657825
MGI SNP Detail
Alliance Variant		 Chr19:45007240 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247857949
MGI SNP Detail
Alliance Variant		 Chr19:45007358 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261120575
MGI SNP Detail
Alliance Variant		 Chr19:45007448 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G A G G G G G G G G G G G G G G G G G G
rs227101729
MGI SNP Detail
Alliance Variant		 Chr19:45007546 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G A A A A A A A A A A G G A A A A A A A G G G G A A A G G A A A A G A A A A A A G A A A A G A A G A A G A
rs246982327
MGI SNP Detail
Alliance Variant		 Chr19:45007550 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213280996
MGI SNP Detail
Alliance Variant		 Chr19:45007576 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238579889
MGI SNP Detail
Alliance Variant		 Chr19:45007646 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs251904524
MGI SNP Detail
Alliance Variant		 Chr19:45007708 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212695703
MGI SNP Detail
Alliance Variant		 Chr19:45007799 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs235707786
MGI SNP Detail
Alliance Variant		 Chr19:45007920 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 95 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252797330
MGI SNP Detail
Alliance Variant		 Chr19:45007967 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 142 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222900412
MGI SNP Detail
Alliance Variant		 Chr19:45007980 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 155 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232970634
MGI SNP Detail
Alliance Variant		 Chr19:45008089 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 264 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252018291
MGI SNP Detail
Alliance Variant		 Chr19:45008114 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 289 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222688219
MGI SNP Detail
Alliance Variant		 Chr19:45008146 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 321 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs246956384
MGI SNP Detail
Alliance Variant		 Chr19:45008158 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 333 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261505089
MGI SNP Detail
Alliance Variant		 Chr19:45008161 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 336 bp distal
 SNP G/T G G G G G G G G G G T G G G G G G G G T G G G G G T G G G G G G G G G G G G G G G G G G T G G G G G G G
rs51765065
MGI SNP Detail
Alliance Variant		 Chr19:45008357 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 532 bp distal
 SNP A/G G G G G G G G G G G A A G G G G G G G A A A A G G G A A G G G G G A G G G G G G A G G G G A G G A G G A G
rs241897734
MGI SNP Detail
Alliance Variant		 Chr19:45008368 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 543 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261150184
MGI SNP Detail
Alliance Variant		 Chr19:45008505 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 680 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs227132104
MGI SNP Detail
Alliance Variant		 Chr19:45008526 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 701 bp distal
 SNP A/C C C C C C C C C C C A A C C C C C C C C A A C C C C A C C C C C C C C C C C C C C C C C C A C C C C A C
rs247017256
MGI SNP Detail
Alliance Variant		 Chr19:45008532 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 707 bp distal
 SNP A/C C C C C C C C C C C A A C C C C C C C C A A C C C C A C C C C C C C C C C C C C C C C C C A C C C C C A C
rs265009202
MGI SNP Detail
Alliance Variant		 Chr19:45008548 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 723 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs230662604
MGI SNP Detail
Alliance Variant		 Chr19:45008562 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 737 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs251999160
MGI SNP Detail
Alliance Variant		 Chr19:45008623 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 798 bp distal
 SNP A/C C C C C C C C C C C A A C C C C C C C C A A C C C C A C C C C C C C C C C C C C C C C C C A C C C C C A C
rs212413575
MGI SNP Detail
Alliance Variant		 Chr19:45008669 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 844 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs231023534
MGI SNP Detail
Alliance Variant		 Chr19:45008950 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1125 bp distal
Rr548381 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246957316
MGI SNP Detail
Alliance Variant		 Chr19:45009085 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1260 bp distal
Rr548381 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs217480019
MGI SNP Detail
Alliance Variant		 Chr19:45009105 Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 1280 bp distal
Rr548381 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46214848
MGI SNP Detail
Alliance Variant		 Chr19:45009199 Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 1374 bp distal
Rr548381 within coordinates of
 SNP T T T
rs259680697
MGI SNP Detail
Alliance Variant		 Chr19:45009203 Lzts2 Intron
Lzts2 mRNA-UTR
Lzts2 Noncoding-Transcript-Variant
Rr548380 1378 bp distal
Rr548381 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51603198
MGI SNP Detail
Alliance Variant		 Chr19:45009301 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1476 bp distal
 SNP T T T
rs237106999
MGI SNP Detail
Alliance Variant		 Chr19:45009316 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1491 bp distal
 SNP A/G G G G G G G G G G G A A G G G G G G G G A A G G G G A G G G G G G G G G G G G G G G G G G A G G G G G A G
rs30668973
MGI SNP Detail
Alliance Variant		 Chr19:45009434 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1609 bp distal
 SNP C/T C T C
rs221515697
MGI SNP Detail
Alliance Variant		 Chr19:45009499 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1674 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241930682
MGI SNP Detail
Alliance Variant		 Chr19:45009533 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1708 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs255151760
MGI SNP Detail
Alliance Variant		 Chr19:45009549 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1724 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31094866
MGI SNP Detail
Alliance Variant		 Chr19:45009554 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1729 bp distal
 SNP A/G A G A
rs241151037
MGI SNP Detail
Alliance Variant		 Chr19:45009569 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1744 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262274242
MGI SNP Detail
Alliance Variant		 Chr19:45009612 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1787 bp distal
 SNP C/T C C C C C C C C C C T T C C C C C C C C T C C C C C T C C C C C C C C C C C C C C C C C C T C C C C C C C
rs230863513
MGI SNP Detail
Alliance Variant		 Chr19:45009687 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1862 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs240831400
MGI SNP Detail
Alliance Variant		 Chr19:45009709 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1884 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264765526
MGI SNP Detail
Alliance Variant		 Chr19:45009723 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1898 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224828469
MGI SNP Detail
Alliance Variant		 Chr19:45009797 Lzts2 Intron
Lzts2 Noncoding-Transcript-Variant
Rr548380 1972 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 84 of 84
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory