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Mouse SNP Summary
Symbol
Name
ID
Rr549475
regulatory region 549475
MGI:8011607

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255408234
MGI SNP Detail
Alliance Variant
Chr19:53368422 Rr549475 1737 bp proximal
Smndc1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs220671893
MGI SNP Detail
Alliance Variant
Chr19:53368489 Rr549475 1670 bp proximal
Smndc1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245075166
MGI SNP Detail
Alliance Variant
Chr19:53368540 Rr549475 1619 bp proximal
Smndc1 mRNA-UTR
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs586432924
MGI SNP Detail
Alliance Variant
Chr19:53368585 Rr549475 1574 bp proximal
Smndc1 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs581048043
MGI SNP Detail
Alliance Variant
Chr19:53368586 Rr549475 1573 bp proximal
Smndc1 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs584889750
MGI SNP Detail
Alliance Variant
Chr19:53368589 Rr549475 1570 bp proximal
Smndc1 mRNA-UTR
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs262408864
MGI SNP Detail
Alliance Variant
Chr19:53368620 Rr549475 1539 bp proximal
Smndc1 mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231319022
MGI SNP Detail
Alliance Variant
Chr19:53368656 Rr549475 1503 bp proximal
Smndc1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239589837
MGI SNP Detail
Alliance Variant
Chr19:53368685 Rr549475 1474 bp proximal
Smndc1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46394119
MGI SNP Detail
Alliance Variant
Chr19:53368878 Rr549475 1281 bp proximal
Smndc1 mRNA-UTR
SNP C/T T T T T T T T T T T C T C
rs46850524
MGI SNP Detail
Alliance Variant
Chr19:53368892 Rr549475 1267 bp proximal
Smndc1 mRNA-UTR
SNP A/T A A A A A A A A A A T A A T A
rs247728296
MGI SNP Detail
Alliance Variant
Chr19:53369056 Rr549475 1103 bp proximal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218778013
MGI SNP Detail
Alliance Variant
Chr19:53369080 Rr549475 1079 bp proximal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227425635
MGI SNP Detail
Alliance Variant
Chr19:53369120 Rr549475 1039 bp proximal
Smndc1 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253908962
MGI SNP Detail
Alliance Variant
Chr19:53369127 Rr549475 1032 bp proximal
Smndc1 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213336934
MGI SNP Detail
Alliance Variant
Chr19:53369238 Rr549475 921 bp proximal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232435072
MGI SNP Detail
Alliance Variant
Chr19:53369271 Rr549475 888 bp proximal
Smndc1 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252775993
MGI SNP Detail
Alliance Variant
Chr19:53369379 Rr549475 780 bp proximal
Smndc1 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs215904167
MGI SNP Detail
Alliance Variant
Chr19:53369392 Rr549475 767 bp proximal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235401462
MGI SNP Detail
Alliance Variant
Chr19:53369454 Rr549475 705 bp proximal
Smndc1 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C G C C C C C C C C C C C
rs581638888
MGI SNP Detail
Alliance Variant
Chr19:53369515 Rr549475 644 bp proximal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51514593
MGI SNP Detail
Alliance Variant
Chr19:53369540 Rr549475 619 bp proximal
Smndc1 Intron
SNP C/T T T T T T T T T T T C T C T
rs220268446
MGI SNP Detail
Alliance Variant
Chr19:53369599 Rr549475 560 bp proximal
Smndc1 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs242387101
MGI SNP Detail
Alliance Variant
Chr19:53369621 Rr549475 538 bp proximal
Smndc1 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46224216
MGI SNP Detail
Alliance Variant
Chr19:53369651 Rr549475 508 bp proximal
Smndc1 Intron
SNP A/C A A A A A A A A A A C A A C A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220079077
MGI SNP Detail
Alliance Variant
Chr19:53369829 Rr549475 330 bp proximal
Smndc1 Intron
Smndc1 Splice-Site
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs239334341
MGI SNP Detail
Alliance Variant
Chr19:53369845 Rr549475 314 bp proximal
Smndc1 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs258472397
MGI SNP Detail
Alliance Variant
Chr19:53369875 Rr549475 284 bp proximal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228855207
MGI SNP Detail
Alliance Variant
Chr19:53369906 Rr549475 253 bp proximal
Smndc1 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241785113
MGI SNP Detail
Alliance Variant
Chr19:53369985 Rr549475 174 bp proximal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261682152
MGI SNP Detail
Alliance Variant
Chr19:53369989 Rr549475 170 bp proximal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229615230
MGI SNP Detail
Alliance Variant
Chr19:53370067 Rr549475 92 bp proximal
Smndc1 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs249651924
MGI SNP Detail
Alliance Variant
Chr19:53370068 Rr549475 91 bp proximal
Smndc1 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
rs213966512
MGI SNP Detail
Alliance Variant
Chr19:53370110 Rr549475 49 bp proximal
Smndc1 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226219815
MGI SNP Detail
Alliance Variant
Chr19:53370202 Rr549475 22 bp distal
Smndc1 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs50274677
MGI SNP Detail
Alliance Variant
Chr19:53370205 Rr549475 25 bp distal
Smndc1 Intron
SNP G/T T T T T T T T T T T G T T G T
rs30660939
MGI SNP Detail
Alliance Variant
Chr19:53370221 Rr549475 41 bp distal
Smndc1 Intron
SNP A/C A C A A A A C C A C A A C C C A C
rs235515158
MGI SNP Detail
Alliance Variant
Chr19:53370227 Rr549475 47 bp distal
Smndc1 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264230604
MGI SNP Detail
Alliance Variant
Chr19:53370271 Rr549475 91 bp distal
Smndc1 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs211925060
MGI SNP Detail
Alliance Variant
Chr19:53370300 Rr549475 120 bp distal
Smndc1 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579308766
MGI SNP Detail
Alliance Variant
Chr19:53370303 Rr549475 123 bp distal
Smndc1 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T A T T T T T T T T T T T T
rs581668388
MGI SNP Detail
Alliance Variant
Chr19:53370304 Rr549475 124 bp distal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A G A A A A A A A A A A A A
rs237159744
MGI SNP Detail
Alliance Variant
Chr19:53370307 Rr549475 127 bp distal
Smndc1 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257233187
MGI SNP Detail
Alliance Variant
Chr19:53370308 Rr549475 128 bp distal
Smndc1 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs220206002
MGI SNP Detail
Alliance Variant
Chr19:53370330 Rr549475 150 bp distal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232891847
MGI SNP Detail
Alliance Variant
Chr19:53370392 Rr549475 212 bp distal
Smndc1 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252022612
MGI SNP Detail
Alliance Variant
Chr19:53370517 Rr549475 337 bp distal
Smndc1 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs50798887
MGI SNP Detail
Alliance Variant
Chr19:53370540 Rr549475 360 bp distal
Smndc1 Intron
SNP C/G G G G G G G G G G G C G C G
rs50031270
MGI SNP Detail
Alliance Variant
Chr19:53370671 Rr549475 491 bp distal
Smndc1 Intron
SNP C/T C C C C C C C C C C T C C T C
rs264758982
MGI SNP Detail
Alliance Variant
Chr19:53370749 Rr549475 569 bp distal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47573615
MGI SNP Detail
Alliance Variant
Chr19:53370801 Rr549475 621 bp distal
Smndc1 Intron
SNP A/G G G G G G G A G G G G G A G A
rs51466820
MGI SNP Detail
Alliance Variant
Chr19:53370812 Rr549475 632 bp distal
Smndc1 Intron
SNP A/T A A A A A A A A A A T A T A
rs49541376
MGI SNP Detail
Alliance Variant
Chr19:53370937 Rr549475 757 bp distal
Smndc1 Intron
SNP A/G A A A A A A G A A A A A A G
rs226359920
MGI SNP Detail
Alliance Variant
Chr19:53370994 Rr549475 814 bp distal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs48277464
MGI SNP Detail
Alliance Variant
Chr19:53371044 Rr549475 864 bp distal
Smndc1 Intron
SNP A/T A A A A A A A A A T A T A
rs585489108
MGI SNP Detail
Alliance Variant
Chr19:53371065 Rr549475 885 bp distal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578617516
MGI SNP Detail
Alliance Variant
Chr19:53371069 Rr549475 889 bp distal
Smndc1 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs259589447
MGI SNP Detail
Alliance Variant
Chr19:53371161 Rr549475 981 bp distal
Smndc1 Intron
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582276484
MGI SNP Detail
Alliance Variant
Chr19:53371171 Rr549475 991 bp distal
Smndc1 Intron
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254673950
MGI SNP Detail
Alliance Variant
Chr19:53371369 Rr549475 1189 bp distal
Smndc1 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48752119
MGI SNP Detail
Alliance Variant
Chr19:53371668 Rr549475 1488 bp distal
Smndc1 Intron
SNP A/G A A A A A A A A A A G A A G A
rs235329973
MGI SNP Detail
Alliance Variant
Chr19:53371751 Rr549475 1571 bp distal
Smndc1 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs51549013
MGI SNP Detail
Alliance Variant
Chr19:53371762 Rr549475 1582 bp distal
Smndc1 Intron
SNP C/T C C C C C C T C C C C C C C T
rs214537309
MGI SNP Detail
Alliance Variant
Chr19:53371775 Rr549475 1595 bp distal
Smndc1 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A T A A T A A A A A A A A
rs47206173
MGI SNP Detail
Alliance Variant
Chr19:53371902 Rr549475 1722 bp distal
Smndc1 Intron
SNP C/T T T T T T T T T T C T C T
rs252145225
MGI SNP Detail
Alliance Variant
Chr19:53371930 Rr549475 1750 bp distal
Smndc1 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51165621
MGI SNP Detail
Alliance Variant
Chr19:53371967 Rr549475 1787 bp distal
Smndc1 Intron
SNP A/C C C C C C C C C C C A C C A C
rs50232582
MGI SNP Detail
Alliance Variant
Chr19:53371978 Rr549475 1798 bp distal
Smndc1 Intron
SNP C/T C C C C C C C C C C T C C T C
rs46824258
MGI SNP Detail
Alliance Variant
Chr19:53372020 Rr549475 1840 bp distal
Smndc1 Coding-Synonymous
Smndc1 mRNA-UTR
SNP C/T C C C C C C T C C C C C C C T
rs47447238
MGI SNP Detail
Alliance Variant
Chr19:53372080 Rr549475 1900 bp distal
Smndc1 Coding-Synonymous
Smndc1 mRNA-UTR
SNP A/G A A A A A A A A A A G A A G A
rs243413047
MGI SNP Detail
Alliance Variant
Chr19:53372143 Rr549475 1963 bp distal
Smndc1 Coding-NonSynonymous
Smndc1 Coding-Synonymous
Smndc1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 71 of 71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory