Rr549477 Mouse SNP Summary

Mouse SNP Summary

Symbol
Name
ID

Rr549477
regulatory region 549477
MGI:8011609

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SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs30398784 MGI SNP Detail Alliance Variant	Chr19:53376478	Rr549477 1984 bp proximal Smndc1 Intron	SNP	C/T		C		T	C	C		C		C						T					T					C	T			C		C			T	T				T		T								C				T
rs30765758 MGI SNP Detail Alliance Variant	Chr19:53376480	Rr549477 1982 bp proximal Smndc1 Intron	SNP	C/T				C	T											C										T						T																		T
rs226968551 MGI SNP Detail Alliance Variant	Chr19:53376579	Rr549477 1883 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs241042535 MGI SNP Detail Alliance Variant	Chr19:53376720	Rr549477 1742 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs264898341 MGI SNP Detail Alliance Variant	Chr19:53376748	Rr549477 1714 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs225966248 MGI SNP Detail Alliance Variant	Chr19:53376755	Rr549477 1707 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs245759199 MGI SNP Detail Alliance Variant	Chr19:53376820	Rr549477 1642 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C		T	C	C	C	C	C	C	C	C	C	C	C	C
rs259161544 MGI SNP Detail Alliance Variant	Chr19:53376829	Rr549477 1633 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs228159683 MGI SNP Detail Alliance Variant	Chr19:53376834	Rr549477 1628 bp proximal Smndc1 Intron	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A		G	A	A	A	A	A	A	A	A	A	A	A	A
rs48596522 MGI SNP Detail Alliance Variant	Chr19:53377048	Rr549477 1414 bp proximal Smndc1 Intron	SNP	A/T		A			A	A		A		A			A								A					A	A			A					T					A		T												A
rs219786793 MGI SNP Detail Alliance Variant	Chr19:53377128	Rr549477 1334 bp proximal Smndc1 Intron	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	C	A	A	A	A
rs52013840 MGI SNP Detail Alliance Variant	Chr19:53377223	Rr549477 1239 bp proximal Smndc1 Intron	SNP	C/T		C			C	C		C		C			C								C					C	C			C					T	C				C		T												C
rs250169526 MGI SNP Detail Alliance Variant	Chr19:53377240	Rr549477 1222 bp proximal Smndc1 Intron	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G		T	G	G	G	G	G	G	G	G	G	G	G	G
rs212616470 MGI SNP Detail Alliance Variant	Chr19:53377274	Rr549477 1188 bp proximal Smndc1 Intron	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T		C	T	T	T	T	T	T	T	T	T	T	T	T
rs46686511 MGI SNP Detail Alliance Variant	Chr19:53377320	Rr549477 1142 bp proximal Smndc1 Intron	SNP	A/T		A			A	A		A		A																A	A															T
rs250303969 MGI SNP Detail Alliance Variant	Chr19:53377354	Rr549477 1108 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C		T	C	C	C	C	C	C	C	C	C	C	C	C
rs220443935 MGI SNP Detail Alliance Variant	Chr19:53377426	Rr549477 1036 bp proximal Smndc1 Intron	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs233308530 MGI SNP Detail Alliance Variant	Chr19:53377483	Rr549477 979 bp proximal Smndc1 Intron	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs263718837 MGI SNP Detail Alliance Variant	Chr19:53377524	Rr549477 938 bp proximal Smndc1 Intron	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G		A	G	G	G	G	G	G	G	A	G	G	G	G
rs226694128 MGI SNP Detail Alliance Variant	Chr19:53377538	Rr549477 924 bp proximal Smndc1 Intron	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G		A	G	G	G	G	G	G	G	G	G	G	G	G
rs581230486 MGI SNP Detail Alliance Variant	Chr19:53377553	Rr549477 909 bp proximal Smndc1 Intron	SNP	A/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	A	T	T	T	T
rs584981623 MGI SNP Detail Alliance Variant	Chr19:53377561	Rr549477 901 bp proximal Smndc1 Intron	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	C	A	A	A	A
rs579160891 MGI SNP Detail Alliance Variant	Chr19:53377572	Rr549477 890 bp proximal Smndc1 Intron	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	T	A	A	A	A
rs243799961 MGI SNP Detail Alliance Variant	Chr19:53377647	Rr549477 815 bp proximal Smndc1 Intron	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	A	C	C	C	C
rs261882156 MGI SNP Detail Alliance Variant	Chr19:53377656	Rr549477 806 bp proximal Smndc1 Intron	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	C	G	G	G	G
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs30707336 MGI SNP Detail Alliance Variant	Chr19:53377689	Rr549477 773 bp proximal Smndc1 Intron	SNP	A/C		A		C												C										A						A																		A
rs239885930 MGI SNP Detail Alliance Variant	Chr19:53377695	Rr549477 767 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs31049331 MGI SNP Detail Alliance Variant	Chr19:53377707	Rr549477 755 bp proximal Smndc1 Intron	SNP	C/T		T		C												C										T						T																		T
rs228125289 MGI SNP Detail Alliance Variant	Chr19:53377862	Rr549477 600 bp proximal Smndc1 Intron	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs581667595 MGI SNP Detail Alliance Variant	Chr19:53377892	Rr549477 570 bp proximal Smndc1 Intron	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs31244521 MGI SNP Detail Alliance Variant	Chr19:53377903	Rr549477 559 bp proximal Smndc1 Intron	SNP	A/C		C		A												A										C
rs266231291 MGI SNP Detail Alliance Variant	Chr19:53377915	Rr549477 547 bp proximal Smndc1 Intron	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	C	A	C	A	C	A		A	C	A	C	A	A	A	A	A	A	A	A	A
rs578528656 MGI SNP Detail Alliance Variant	Chr19:53377916	Rr549477 546 bp proximal Smndc1 Intron	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	C	A	A	A	A
rs228149617 MGI SNP Detail Alliance Variant	Chr19:53377975	Rr549477 487 bp proximal Smndc1 Intron	SNP	A/C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G		A	G	G	G	G	G	G	G	G	G	G	C	G
rs30498743 MGI SNP Detail Alliance Variant	Chr19:53377990	Rr549477 472 bp proximal Smndc1 Intron	SNP	A/T		T		A	T	T		T		T						A										T	A					T																		T
rs47521951 MGI SNP Detail Alliance Variant	Chr19:53378038	Rr549477 424 bp proximal Smndc1 Intron	SNP	T				T
rs46407264 MGI SNP Detail Alliance Variant	Chr19:53378040	Rr549477 422 bp proximal Smndc1 Intron	SNP	A/G		A			A	A		A		A																A	A								G							G
rs226391110 MGI SNP Detail Alliance Variant	Chr19:53378052	Rr549477 410 bp proximal Smndc1 Intron	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T		C	T	T	T	T	T	T	T	C	T	T	T	T
rs244345487 MGI SNP Detail Alliance Variant	Chr19:53378055	Rr549477 407 bp proximal Smndc1 Intron	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs214996304 MGI SNP Detail Alliance Variant	Chr19:53378056	Rr549477 406 bp proximal Smndc1 Intron	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs30503006 MGI SNP Detail Alliance Variant	Chr19:53378081	Rr549477 381 bp proximal Smndc1 Intron	SNP	C/T		C		T	C	C		C		C						T										C	T					C			C	T														C
rs259949595 MGI SNP Detail Alliance Variant	Chr19:53378088	Rr549477 374 bp proximal Smndc1 Intron	SNP	C/G	G	G			G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G		C	G	G	G	G	G	G		G	G	G	G	G
rs585926908 MGI SNP Detail Alliance Variant	Chr19:53378127	Rr549477 335 bp proximal Smndc1 Intron	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C		C	C	A	C	C	C	C	C	C		A	C	C	C	C	C	C	C	C	C	C	C	C
rs219007966 MGI SNP Detail Alliance Variant	Chr19:53378144	Rr549477 318 bp proximal Smndc1 Intron	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G		G	G	G	G	G	C	G	G	G	G	G	G			G	G	G	G	G	G	G	C	G	G	G	G
rs234647448 MGI SNP Detail Alliance Variant	Chr19:53378164	Rr549476 within coordinates of Rr549477 298 bp proximal Smndc1 Intron	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A		G	A	A	A	A	A	A	A	G	A	A	A	A
rs261565484 MGI SNP Detail Alliance Variant	Chr19:53378177	Rr549476 within coordinates of Rr549477 285 bp proximal Smndc1 Intron	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A		G	A	A	A	A	A	A	A	A	A	A	A	A
rs219444700 MGI SNP Detail Alliance Variant	Chr19:53378197	Rr549476 within coordinates of Rr549477 265 bp proximal Smndc1 Intron	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T		C	T	T	T	T	T	T	T	C	T	T	T	T
rs239619258 MGI SNP Detail Alliance Variant	Chr19:53378237	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 225 bp proximal Smndc1 Intron	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs252985412 MGI SNP Detail Alliance Variant	Chr19:53378241	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 221 bp proximal Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C		T	C	C	C	C	C	C	C	C	C	C	C	C
rs222055485 MGI SNP Detail Alliance Variant	Chr19:53378246	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 216 bp proximal Smndc1 Intron	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A		C	A	A	A	A	A	A	A	A	A	A	A	A
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs46381459 MGI SNP Detail Alliance Variant	Chr19:53378290	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 172 bp proximal Smndc1 Intron Smndc1 Splice-Site	SNP	A/G		A			A	A		A		A																A	A															G
rs264462174 MGI SNP Detail Alliance Variant	Chr19:53378331	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 131 bp proximal Smndc1 Intron Smndc1 mRNA-UTR	SNP	A/G		A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A		G	A	A	A	A	A	A	A	G	A	A	A	A
rs228354947 MGI SNP Detail Alliance Variant	Chr19:53378372	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 90 bp proximal Smndc1 Intron Smndc1 mRNA-UTR	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C		T	C	C	C	C	C	C	C	T	C	C	C	C
rs242595754 MGI SNP Detail Alliance Variant	Chr19:53378404	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 58 bp proximal Smndc1 Intron Smndc1 mRNA-UTR	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G		C	G	G	G	G	G	G	G	G	G	G	G	G
rs255843962 MGI SNP Detail Alliance Variant	Chr19:53378417	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549476 within coordinates of Rr549477 45 bp proximal Smndc1 Intron Smndc1 mRNA-UTR	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T		C	T	T	T	T	T	T	T	C	T	T	T
rs226333700 MGI SNP Detail Alliance Variant	Chr19:53378498	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 within coordinates of Smndc1 Intron	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs578706559 MGI SNP Detail Alliance Variant	Chr19:53378511	Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 within coordinates of Smndc1 Intron	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs245533665 MGI SNP Detail Alliance Variant	Chr19:53378525	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 within coordinates of Smndc1 Intron	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	C	T
rs214938865 MGI SNP Detail Alliance Variant	Chr19:53378552	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 18 bp distal Rr549478 within coordinates of Smndc1 Intron	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T		T	T	T	C	T	T	T	T	T	T		C	T	T	T	T	T	T	T	C	T	T	T	T
rs232176212 MGI SNP Detail Alliance Variant	Chr19:53378566	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 32 bp distal Rr549478 within coordinates of Smndc1 Intron	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs259016968 MGI SNP Detail Alliance Variant	Chr19:53378626	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 92 bp distal Rr549478 within coordinates of Smndc1 Intron Smndc1 mRNA-UTR	SNP	A/C	C	C			C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	A	C	C	C	C
rs218718799 MGI SNP Detail Alliance Variant	Chr19:53378644	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 110 bp distal Rr549478 within coordinates of Smndc1 Intron Smndc1 mRNA-UTR	SNP	A/G	A	A			A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A		G	A	A	A	A	A	A		G	A	A	A	A
rs235913882 MGI SNP Detail Alliance Variant	Chr19:53378667	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 133 bp distal Rr549478 within coordinates of Smndc1 Intron Smndc1 mRNA-UTR	SNP	G/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T		G	T	T	T	T	T	T		G	T	T	T	T
rs250394589 MGI SNP Detail Alliance Variant	Chr19:53378681	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 147 bp distal Rr549478 within coordinates of Smndc1 Intron Smndc1 mRNA-UTR	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		T	A	A	A	A	A	A		A	A	A	A	A
rs213648532 MGI SNP Detail Alliance Variant	Chr19:53378690	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 156 bp distal Rr549478 within coordinates of Smndc1 Intron Smndc1 mRNA-UTR	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G		A	G	G	G	G	G	G		A	G	G	G	G
rs232580390 MGI SNP Detail Alliance Variant	Chr19:53378739	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 205 bp distal Rr549478 within coordinates of Smndc1 Intron	SNP	G/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T		T	T	T	T	T	T		G	T	T	T	T	T	T		G	T	T	T	T
rs252690764 MGI SNP Detail Alliance Variant	Chr19:53378752	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 218 bp distal Rr549478 within coordinates of Smndc1 Intron	SNP	C/G	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C		C	C	C	C	C	C		G	C	C	C	C	C	C		C	C	C	C	C
rs225099738 MGI SNP Detail Alliance Variant	Chr19:53378758	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 224 bp distal Rr549478 within coordinates of Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	T	C	T	C	T	C	T	C		C	T	C	T	C	C	C		C	C	C	C
rs247616331 MGI SNP Detail Alliance Variant	Chr19:53378829	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 295 bp distal Rr549478 within coordinates of Smndc1 Intron	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C		T	C	C	C
rs264333559 MGI SNP Detail Alliance Variant	Chr19:53378975	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 441 bp distal Rr549478 within coordinates of Smndc1 mRNA-UTR Tssr159816 within coordinates of	SNP	A/G		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G		G	G	A	G	G	G	G	G	G		A	G	G	G	G	G	G		G	G	G	G	G
rs220484367 MGI SNP Detail Alliance Variant	Chr19:53378982	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 448 bp distal Rr549478 within coordinates of Smndc1 mRNA-UTR Tssr159817 within coordinates of	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A		G	A	A	A	A
rs245140808 MGI SNP Detail Alliance Variant	Chr19:53379039	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 505 bp distal Rr549480 within coordinates of Smndc1 mRNA-UTR Tssr159819 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs255774076 MGI SNP Detail	Chr19:53379083	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 549 bp distal Rr549480 within coordinates of	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C		A	C	C	C	C
rs49752528 MGI SNP Detail	Chr19:53379129	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 595 bp distal Rr549480 within coordinates of	SNP	A/G		A			A	A		A		A																A	A								G							G
rs239457967 MGI SNP Detail	Chr19:53379177	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 643 bp distal Rr549480 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G		A	G	G	G	G
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258391995 MGI SNP Detail	Chr19:53379263	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 729 bp distal Rr549480 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs234422440 MGI SNP Detail	Chr19:53379310	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 776 bp distal Rr549480 within coordinates of	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C		T	C	C	C	C
rs253708942 MGI SNP Detail	Chr19:53379346	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 812 bp distal Rr549480 within coordinates of Tssr156978 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs266086112 MGI SNP Detail	Chr19:53379352	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 818 bp distal Rr549480 within coordinates of Tssr156978 within coordinates of	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A		T	A	A	A	A
rs227241615 MGI SNP Detail	Chr19:53379367	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 833 bp distal Rr549480 within coordinates of	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		T	C	C	C	C	C	C		C	C	C	C	C
rs586127911 MGI SNP Detail	Chr19:53379406	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 872 bp distal Rr549480 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs243980274 MGI SNP Detail	Chr19:53379449	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 915 bp distal Rr549480 within coordinates of	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A		T	A	A	A	A	A	A	A	A	A	A	A	A
rs213576114 MGI SNP Detail	Chr19:53379492	8030456M14Rik within coordinates of Cpgi11060 within coordinates of Rr394551 within coordinates of Rr549477 958 bp distal Rr549480 within coordinates of	SNP	A/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	A	T	T	T	T
rs232783629 MGI SNP Detail	Chr19:53379552	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1018 bp distal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs51148332 MGI SNP Detail	Chr19:53379582	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1048 bp distal	SNP	A/T		A			A	A		A		A																A	A															T
rs580290846 MGI SNP Detail	Chr19:53379612	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1078 bp distal	SNP	G/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	G	T	T	T	T
rs216517236 MGI SNP Detail	Chr19:53379649	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1115 bp distal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs241963728 MGI SNP Detail	Chr19:53379716	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1182 bp distal	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	T	A	A	A	A
rs260998900 MGI SNP Detail	Chr19:53379794	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1260 bp distal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs220345348 MGI SNP Detail	Chr19:53379842	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1308 bp distal	SNP	G/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	G	T	T	T	T
rs230747896 MGI SNP Detail	Chr19:53379845	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1311 bp distal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs249782341 MGI SNP Detail	Chr19:53379901	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1367 bp distal	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	C	G	G	G	G
rs220131815 MGI SNP Detail	Chr19:53379902	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1368 bp distal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs239595702 MGI SNP Detail	Chr19:53379915	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1381 bp distal	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs258529613 MGI SNP Detail	Chr19:53379919	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1385 bp distal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs226052344 MGI SNP Detail	Chr19:53379940	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1406 bp distal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs251756929 MGI SNP Detail	Chr19:53379996	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1462 bp distal	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs264295031 MGI SNP Detail	Chr19:53380001	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1467 bp distal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs227877435 MGI SNP Detail	Chr19:53380005	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1471 bp distal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs244103397 MGI SNP Detail	Chr19:53380031	8030456M14Rik within coordinates of Rr394551 within coordinates of Rr549477 1497 bp distal	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	C	A	A	A	A

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Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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