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Mouse SNP Summary
Symbol
Name
ID
Rr550643
regulatory region 550643
MGI:8012775

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Showing SNP(s) 1 - 56 of 56

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583898823
MGI SNP Detail
Chr19:59445009 Emx2os within coordinates of
Rr550643 2000 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587030031
MGI SNP Detail
Chr19:59445013 Emx2os within coordinates of
Rr550643 1996 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3659728
MGI SNP Detail
Chr19:59445033 Emx2os within coordinates of
Rr550643 1976 bp proximal
SNP A/G G G G A G A G
rs228705008
MGI SNP Detail
Chr19:59445037 Emx2os within coordinates of
Rr550643 1972 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3660180
MGI SNP Detail
Chr19:59445041 Emx2os within coordinates of
Rr550643 1968 bp proximal
SNP C/T C C C T C T C
rs212357910
MGI SNP Detail
Chr19:59445185 Emx2os within coordinates of
Rr550643 1824 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235481564
MGI SNP Detail
Chr19:59445217 Emx2os within coordinates of
Rr550643 1792 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255241817
MGI SNP Detail
Chr19:59445238 Emx2os within coordinates of
Rr550643 1771 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs214330493
MGI SNP Detail
Chr19:59445344 Emx2os within coordinates of
Rr550643 1665 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs232828446
MGI SNP Detail
Chr19:59445459 Emx2os within coordinates of
Rr550643 1550 bp proximal
SNP A/C C A A C C C C C C C A C C C A A A C C
rs251879538
MGI SNP Detail
Chr19:59445533 Emx2os within coordinates of
Rr550643 1476 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221864952
MGI SNP Detail
Chr19:59445657 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 1352 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255248724
MGI SNP Detail
Chr19:59445928 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 1081 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30961291
MGI SNP Detail
Chr19:59446023 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 986 bp proximal
SNP A/T T A T T T
rs30310891
MGI SNP Detail
Chr19:59446024 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 985 bp proximal
SNP A/G A G A A A
rs257926421
MGI SNP Detail
Chr19:59446212 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 797 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30661952
MGI SNP Detail
Chr19:59446213 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 796 bp proximal
SNP A/T A T A A A
rs240880075
MGI SNP Detail
Chr19:59446225 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 784 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260228004
MGI SNP Detail
Chr19:59446238 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 771 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30757848
MGI SNP Detail
Chr19:59446239 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 770 bp proximal
SNP A/G G A G G G
rs30640521
MGI SNP Detail
Chr19:59446264 Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 745 bp proximal
SNP A/T A A T A A A
rs261602788
MGI SNP Detail
Chr19:59446432 Cpgi11127 within coordinates of
Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 577 bp proximal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs50066458
MGI SNP Detail
Chr19:59446632 Cpgi11127 within coordinates of
Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 377 bp proximal
SNP C/G G G C G
rs250829495
MGI SNP Detail
Chr19:59446662 Cpgi11127 within coordinates of
Emx2os within coordinates of
Rr550640 within coordinates of
Rr550643 347 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214469316
MGI SNP Detail
Chr19:59446703 Cpgi11127 within coordinates of
Emx2os within coordinates of
Rr550641 within coordinates of
Rr550643 306 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52189206
MGI SNP Detail
Chr19:59446735 Cpgi11127 within coordinates of
Emx2os within coordinates of
Rr550641 within coordinates of
Rr550643 274 bp proximal
Tssr160015 within coordinates of
SNP A/T A A A T
rs245937476
MGI SNP Detail
Alliance Variant
Chr19:59446892 Cpgi11127 within coordinates of
Emx2 mRNA-UTR
Emx2os within coordinates of
Rr550642 within coordinates of
Rr550643 117 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs46716233
MGI SNP Detail
Alliance Variant
Chr19:59446970 Cpgi11127 within coordinates of
Emx2 mRNA-UTR
Emx2os within coordinates of
Rr550642 within coordinates of
Rr550643 39 bp proximal
Tssr160016 within coordinates of
SNP A/G G G G A G
rs240151897
MGI SNP Detail
Alliance Variant
Chr19:59447542 Cpgi11127 within coordinates of
Emx2 mRNA-UTR
Rr550643 within coordinates of
Tssr157349 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs260713657
MGI SNP Detail
Alliance Variant
Chr19:59447546 Cpgi11127 within coordinates of
Emx2 mRNA-UTR
Rr550643 within coordinates of
Tssr157349 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221140896
MGI SNP Detail
Alliance Variant
Chr19:59447902 Cpgi11127 within coordinates of
Emx2 Coding-Synonymous
Rr550643 345 bp distal
SNP C/G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C
rs50155758
MGI SNP Detail
Alliance Variant
Chr19:59448239 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 682 bp distal
Rr550644 within coordinates of
SNP A A A A A A
rs47514099
MGI SNP Detail
Alliance Variant
Chr19:59448272 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 715 bp distal
Rr550644 within coordinates of
SNP G G G G G G
rs220710376
MGI SNP Detail
Alliance Variant
Chr19:59448336 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 779 bp distal
Rr550644 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240906208
MGI SNP Detail
Alliance Variant
Chr19:59448343 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 786 bp distal
Rr550644 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253913436
MGI SNP Detail
Alliance Variant
Chr19:59448347 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 790 bp distal
Rr550644 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs47960997
MGI SNP Detail
Alliance Variant
Chr19:59448348 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 791 bp distal
Rr550644 within coordinates of
SNP T T T T T T
rs248579393
MGI SNP Detail
Alliance Variant
Chr19:59448349 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 792 bp distal
Rr550644 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs264723211
MGI SNP Detail
Alliance Variant
Chr19:59448373 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 816 bp distal
Rr550644 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs229067304
MGI SNP Detail
Alliance Variant
Chr19:59448374 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 817 bp distal
Rr550644 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs237739729
MGI SNP Detail
Alliance Variant
Chr19:59448402 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 845 bp distal
Rr550644 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256429692
MGI SNP Detail
Alliance Variant
Chr19:59448411 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 854 bp distal
Rr550644 within coordinates of
SNP C/T C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs226882191
MGI SNP Detail
Alliance Variant
Chr19:59448496 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 939 bp distal
Rr550644 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245972064
MGI SNP Detail
Alliance Variant
Chr19:59448515 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 958 bp distal
Rr550644 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30789342
MGI SNP Detail
Alliance Variant
Chr19:59448576 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 1019 bp distal
Rr550644 within coordinates of
SNP G/T G G T G G G
rs48121114
MGI SNP Detail
Alliance Variant
Chr19:59448590 Cpgi11127 within coordinates of
Emx2 Intron
Rr550643 1033 bp distal
Rr550644 within coordinates of
SNP C C C C C C
rs249085366
MGI SNP Detail
Alliance Variant
Chr19:59448815 Emx2 Intron
Rr550643 1258 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213096205
MGI SNP Detail
Alliance Variant
Chr19:59448844 Emx2 Intron
Rr550643 1287 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236000121
MGI SNP Detail
Alliance Variant
Chr19:59448870 Emx2 Intron
Rr550643 1313 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251766632
MGI SNP Detail
Alliance Variant
Chr19:59448997 Emx2 Intron
Rr550643 1440 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30323693
MGI SNP Detail
Alliance Variant
Chr19:59449164 Emx2 Intron
Rr550643 1607 bp distal
SNP C/T T T C T T T
rs234403279
MGI SNP Detail
Alliance Variant
Chr19:59449208 Emx2 Intron
Rr550643 1651 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253951263
MGI SNP Detail
Alliance Variant
Chr19:59449251 Emx2 Intron
Rr550643 1694 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs31278778
MGI SNP Detail
Alliance Variant
Chr19:59449261 Emx2 Intron
Rr550643 1704 bp distal
SNP A/G G G A G G G
rs30570856
MGI SNP Detail
Alliance Variant
Chr19:59449441 Cpgi11128 within coordinates of
Emx2 Intron
Rr550643 1884 bp distal
SNP G/T G G T G G G
rs255794951
MGI SNP Detail
Alliance Variant
Chr19:59449540 Cpgi11128 within coordinates of
Emx2 Intron
Rr550643 1983 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 56 of 56

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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