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Mouse SNP Summary
Symbol
Name
ID
Rr553548
regulatory region 553548
MGI:8015680

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581787298
MGI SNP Detail
Alliance Variant
Chr2:27315055 Rr553546 within coordinates of
Rr553548 1980 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs584033719
MGI SNP Detail
Alliance Variant
Chr2:27315057 Rr553546 within coordinates of
Rr553548 1978 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214258119
MGI SNP Detail
Alliance Variant
Chr2:27315149 Rr553546 within coordinates of
Rr553548 1886 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231614319
MGI SNP Detail
Alliance Variant
Chr2:27315174 Rr553546 within coordinates of
Rr553548 1861 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs261278986
MGI SNP Detail
Alliance Variant
Chr2:27315194 Rr553546 within coordinates of
Rr553548 1841 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C C C T
rs218333002
MGI SNP Detail
Alliance Variant
Chr2:27315210 Rr553546 within coordinates of
Rr553548 1825 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs248364214
MGI SNP Detail
Alliance Variant
Chr2:27315407 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1628 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263796575
MGI SNP Detail
Alliance Variant
Chr2:27315664 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1371 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225087386
MGI SNP Detail
Alliance Variant
Chr2:27315696 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1339 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248400100
MGI SNP Detail
Alliance Variant
Chr2:27315809 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1226 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs256781609
MGI SNP Detail
Alliance Variant
Chr2:27315815 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1220 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225583573
MGI SNP Detail
Alliance Variant
Chr2:27315817 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1218 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs578545120
MGI SNP Detail
Alliance Variant
Chr2:27315825 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1210 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs236989256
MGI SNP Detail
Alliance Variant
Chr2:27315830 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1205 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254409068
MGI SNP Detail
Alliance Variant
Chr2:27315841 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1194 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227858919
MGI SNP Detail
Alliance Variant
Chr2:27315867 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1168 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs254338981
MGI SNP Detail
Alliance Variant
Chr2:27315916 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 1119 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G G A A A A A A A A A A A A A A A
rs217691863
MGI SNP Detail
Alliance Variant
Chr2:27316158 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 877 bp proximal
Vav2 Intron
Vav2 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs232112892
MGI SNP Detail
Alliance Variant
Chr2:27316688 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 347 bp proximal
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs33100623
MGI SNP Detail
Alliance Variant
Chr2:27316735 Cpgi11368 within coordinates of
Rr553546 within coordinates of
Rr553548 300 bp proximal
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/G A G G
rs214392321
MGI SNP Detail
Alliance Variant
Chr2:27317203 Cpgi11368 within coordinates of
Rr553548 within coordinates of
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A C A A A A
rs231526976
MGI SNP Detail
Alliance Variant
Chr2:27317282 Cpgi11368 within coordinates of
Rr553548 within coordinates of
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A A A A A A A A A A A
rs6306748
MGI SNP Detail
Alliance Variant
Chr2:27317387 Cpgi11368 within coordinates of
Rr553548 within coordinates of
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/T T A
rs6307144
MGI SNP Detail
Alliance Variant
Chr2:27317402 Cpgi11368 within coordinates of
Rr553548 within coordinates of
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/T T A
rs243252115
MGI SNP Detail
Alliance Variant
Chr2:27317452 Cpgi11368 within coordinates of
Rr553548 within coordinates of
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260443742
MGI SNP Detail
Alliance Variant
Chr2:27317470 Cpgi11368 within coordinates of
Rr553548 within coordinates of
Vav2 mRNA-UTR
Vav2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27216999
MGI SNP Detail
Chr2:27317690 Rr553548 155 bp distal
SNP C/T T T T T T T C T T
rs6210741
MGI SNP Detail
Chr2:27317737 Rr553548 202 bp distal
SNP A/T A T
rs250810153
MGI SNP Detail
Chr2:27317757 Rr553548 222 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6210790
MGI SNP Detail
Chr2:27317759 Rr553548 224 bp distal
SNP C/T T T T T T T C C T T T T T
rs236924543
MGI SNP Detail
Chr2:27317872 Rr553548 337 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs254155305
MGI SNP Detail
Chr2:27317880 Rr553548 345 bp distal
SNP C/G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G C G G G G
rs6211361
MGI SNP Detail
Chr2:27317887 Rr553548 352 bp distal
SNP A/C C A
rs6211756
MGI SNP Detail
Chr2:27317905 Rr553548 370 bp distal
SNP A/C C A
rs6211818
MGI SNP Detail
Chr2:27317945 Rr553548 410 bp distal
SNP A/T T A
rs6211836
MGI SNP Detail
Chr2:27317956 Rr553548 421 bp distal
SNP C/T T C
rs232672143
MGI SNP Detail
Chr2:27318034 Rr553548 499 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246181695
MGI SNP Detail
Chr2:27318054 Rr553548 519 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258265825
MGI SNP Detail
Chr2:27318081 Rr553548 546 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs225749056
MGI SNP Detail
Chr2:27318083 Rr553548 548 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs244295330
MGI SNP Detail
Chr2:27318169 Rr553548 634 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs212051979
MGI SNP Detail
Chr2:27318209 Rr553548 674 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T C T
rs240212789
MGI SNP Detail
Chr2:27318225 Rr553548 690 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259348603
MGI SNP Detail
Chr2:27318264 Rr553548 729 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216953807
MGI SNP Detail
Chr2:27318354 Rr553548 819 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs27216998
MGI SNP Detail
Chr2:27318646 Rr553548 1111 bp distal
SNP C/T C C C C C T C C C C C
rs250554867
MGI SNP Detail
Chr2:27318651 Rr553548 1116 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs219654835
MGI SNP Detail
Chr2:27318701 Rr553548 1166 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs231036589
MGI SNP Detail
Chr2:27318705 Rr553548 1170 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs248573873
MGI SNP Detail
Chr2:27318826 Rr553548 1291 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227481895
MGI SNP Detail
Chr2:27318829 Rr553548 1294 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T T T T C T T T T T T C T T C T
rs247833974
MGI SNP Detail
Chr2:27318844 Rr553548 1309 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265857938
MGI SNP Detail
Chr2:27318847 Rr553548 1312 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224764280
MGI SNP Detail
Chr2:27318857 Rr553548 1322 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27216997
MGI SNP Detail
Chr2:27318886 Rr553548 1351 bp distal
SNP C/G C C C C C C C C C C G
rs258018678
MGI SNP Detail
Chr2:27318924 Rr553548 1389 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27216996
MGI SNP Detail
Chr2:27318956 Rr553548 1421 bp distal
SNP A/G G G G G G G G G G A
rs244234113
MGI SNP Detail
Chr2:27318964 Rr553548 1429 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs261509910
MGI SNP Detail
Chr2:27319053 Rr553548 1518 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs234797440
MGI SNP Detail
Chr2:27319068 Rr553548 1533 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs253825173
MGI SNP Detail
Chr2:27319115 Rr553548 1580 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs217328623
MGI SNP Detail
Chr2:27319156 Rr553548 1621 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs233018640
MGI SNP Detail
Chr2:27319277 Rr553548 1742 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244745557
MGI SNP Detail
Chr2:27319323 Rr553548 1788 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs213715885
MGI SNP Detail
Chr2:27319364 Rr553548 1829 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230813709
MGI SNP Detail
Chr2:27319377 Rr553548 1842 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261169108
MGI SNP Detail
Chr2:27319380 Rr553548 1845 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs227185754
MGI SNP Detail
Chr2:27319427 Rr553548 1892 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242361562
MGI SNP Detail
Chr2:27319442 Rr553548 1907 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259750519
MGI SNP Detail
Chr2:27319456 Rr553548 1921 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A G A
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Showing SNP(s) 1 - 70 of 70

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory