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Mouse SNP Summary
Symbol
Name
ID 		Rr553837
regulatory region 553837
MGI:8015969

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222507569
MGI SNP Detail		 Chr2:28454573 Gm13381 within coordinates of
Rr553837 1993 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs27177628
MGI SNP Detail		 Chr2:28454580 Gm13381 within coordinates of
Rr553837 1986 bp proximal
 SNP G/T G T G G
rs255695244
MGI SNP Detail		 Chr2:28454593 Gm13381 within coordinates of
Rr553837 1973 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs228959166
MGI SNP Detail		 Chr2:28454691 Gm13381 within coordinates of
Rr553837 1875 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247727720
MGI SNP Detail		 Chr2:28454715 Gm13381 within coordinates of
Rr553837 1851 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263449719
MGI SNP Detail		 Chr2:28454787 Gm13381 within coordinates of
Rr553837 1779 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231912950
MGI SNP Detail		 Chr2:28454865 Gm13381 within coordinates of
Rr553837 1701 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G A
rs583969261
MGI SNP Detail		 Chr2:28454919 Gm13381 within coordinates of
Rr553837 1647 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251726495
MGI SNP Detail		 Chr2:28454965 Gm13381 within coordinates of
Rr553837 1601 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214533596
MGI SNP Detail		 Chr2:28454999 Gm13381 within coordinates of
Rr553837 1567 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A G
rs587218429
MGI SNP Detail		 Chr2:28455017 Gm13381 within coordinates of
Rr553837 1549 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235745028
MGI SNP Detail		 Chr2:28455028 Gm13381 within coordinates of
Rr553837 1538 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27177627
MGI SNP Detail		 Chr2:28455033 Gm13381 within coordinates of
Rr553837 1533 bp proximal
 SNP C/T T C
rs217613728
MGI SNP Detail		 Chr2:28455096 Gm13381 within coordinates of
Rr553837 1470 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234383355
MGI SNP Detail		 Chr2:28455128 Gm13381 within coordinates of
Rr553837 1438 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs252049334
MGI SNP Detail		 Chr2:28455160 Gm13381 within coordinates of
Rr553837 1406 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27177626
MGI SNP Detail		 Chr2:28455247 Gm13381 within coordinates of
Rr553837 1319 bp proximal
 SNP A/G A G G G
rs239194143
MGI SNP Detail		 Chr2:28455391 Gm13381 within coordinates of
Rr553837 1175 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27177625
MGI SNP Detail		 Chr2:28455463 Gm13381 within coordinates of
Rr553837 1103 bp proximal
 SNP A/T A T T
rs221978995
MGI SNP Detail		 Chr2:28455522 Gm13381 within coordinates of
Rr553837 1044 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A G
rs238013288
MGI SNP Detail		 Chr2:28455551 Gm13381 within coordinates of
Rr553837 1015 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C T
rs255983760
MGI SNP Detail		 Chr2:28455574 Gm13381 within coordinates of
Rr553837 992 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A G
rs223474291
MGI SNP Detail		 Chr2:28455717 Gm13381 within coordinates of
Rr553837 849 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A G
rs241697400
MGI SNP Detail		 Chr2:28455817 Gm13381 within coordinates of
Rr553837 749 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265629729
MGI SNP Detail		 Chr2:28455836 Gm13381 within coordinates of
Rr553837 730 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231410261
MGI SNP Detail		 Chr2:28455930 Gm13381 within coordinates of
Rr553837 636 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T G
rs256023410
MGI SNP Detail		 Chr2:28455949 Gm13381 within coordinates of
Rr553837 617 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A G
rs262499259
MGI SNP Detail		 Chr2:28455987 Gm13381 within coordinates of
Rr553837 579 bp proximal
 SNP A/G/T A A A A A A A A A A A A A A A A A A A T A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A T
rs224678107
MGI SNP Detail		 Chr2:28456179 Gm13381 within coordinates of
Rr553837 387 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T G
rs242608204
MGI SNP Detail		 Chr2:28456245 Gm13381 within coordinates of
Rr553837 321 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs217582134
MGI SNP Detail
Alliance Variant		 Chr2:28456258 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 308 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581602587
MGI SNP Detail
Alliance Variant		 Chr2:28456293 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 273 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27177624
MGI SNP Detail
Alliance Variant		 Chr2:28456304 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 262 bp proximal
 SNP A/G G G G A
rs253197906
MGI SNP Detail
Alliance Variant		 Chr2:28456425 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 141 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs216268609
MGI SNP Detail
Alliance Variant		 Chr2:28456440 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 126 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237140634
MGI SNP Detail
Alliance Variant		 Chr2:28456494 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 72 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262120773
MGI SNP Detail
Alliance Variant		 Chr2:28456499 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 67 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213042090
MGI SNP Detail
Alliance Variant		 Chr2:28456542 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 24 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A G
rs230470808
MGI SNP Detail
Alliance Variant		 Chr2:28456557 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 9 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C G
rs249529142
MGI SNP Detail
Alliance Variant		 Chr2:28456636 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223404207
MGI SNP Detail
Alliance Variant		 Chr2:28456645 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs241983515
MGI SNP Detail
Alliance Variant		 Chr2:28456652 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259065664
MGI SNP Detail
Alliance Variant		 Chr2:28456756 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223804307
MGI SNP Detail
Alliance Variant		 Chr2:28456771 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP C/G/T G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G T G G G G
rs243768613
MGI SNP Detail
Alliance Variant		 Chr2:28456772 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs265007914
MGI SNP Detail
Alliance Variant		 Chr2:28456793 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A G
rs27177623
MGI SNP Detail
Alliance Variant		 Chr2:28456822 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/G A G
rs236148494
MGI SNP Detail
Alliance Variant		 Chr2:28456823 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C G
rs27177622
MGI SNP Detail
Alliance Variant		 Chr2:28456860 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/C A C
rs228805450
MGI SNP Detail
Alliance Variant		 Chr2:28456924 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258750159
MGI SNP Detail
Alliance Variant		 Chr2:28456984 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 59 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs13474704
MGI SNP Detail
Alliance Variant		 Chr2:28457016 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 91 bp distal
 SNP A/T A T
rs231239617
MGI SNP Detail
Alliance Variant		 Chr2:28457026 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 101 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27177621
MGI SNP Detail
Alliance Variant		 Chr2:28457063 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 138 bp distal
 SNP G/T T G G
rs213047531
MGI SNP Detail
Alliance Variant		 Chr2:28457177 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 252 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T A
rs230039263
MGI SNP Detail
Alliance Variant		 Chr2:28457178 Gm13381 within coordinates of
Gtf3c5 mRNA-UTR
Rr553837 253 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249439133
MGI SNP Detail
Alliance Variant		 Chr2:28457228 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 303 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs217307098
MGI SNP Detail
Alliance Variant		 Chr2:28457232 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 307 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs235488194
MGI SNP Detail
Alliance Variant		 Chr2:28457405 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 480 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G A
rs263323862
MGI SNP Detail
Alliance Variant		 Chr2:28457406 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 481 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27177620
MGI SNP Detail
Alliance Variant		 Chr2:28457435 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 510 bp distal
 SNP G/T T G G
rs246492808
MGI SNP Detail
Alliance Variant		 Chr2:28457441 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 516 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27177619
MGI SNP Detail
Alliance Variant		 Chr2:28457481 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 556 bp distal
 SNP C/T T C C
rs218425559
MGI SNP Detail
Alliance Variant		 Chr2:28457503 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 578 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235700174
MGI SNP Detail
Alliance Variant		 Chr2:28457521 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 596 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs260115822
MGI SNP Detail
Alliance Variant		 Chr2:28457592 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 667 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs228773285
MGI SNP Detail
Alliance Variant		 Chr2:28457596 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 671 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs582475446
MGI SNP Detail
Alliance Variant		 Chr2:28457714 Gm13381 within coordinates of
Gtf3c5 Coding-Synonymous
Rr553837 789 bp distal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584810271
MGI SNP Detail
Alliance Variant		 Chr2:28457720 Gm13381 within coordinates of
Gtf3c5 Coding-Synonymous
Rr553837 795 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579385795
MGI SNP Detail
Alliance Variant		 Chr2:28457726 Gm13381 within coordinates of
Gtf3c5 Coding-Synonymous
Rr553837 801 bp distal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582803359
MGI SNP Detail
Alliance Variant		 Chr2:28457729 Gm13381 within coordinates of
Gtf3c5 Coding-Synonymous
Rr553837 804 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs27177618
MGI SNP Detail
Alliance Variant		 Chr2:28457759 Gm13381 within coordinates of
Gtf3c5 Coding-Synonymous
Rr553837 834 bp distal
 SNP C/T T C
rs27177617
MGI SNP Detail
Alliance Variant		 Chr2:28457794 Gm13381 within coordinates of
Gtf3c5 Coding-NonSynonymous
Gtf3c5 Splice-Site
Rr553837 869 bp distal
 SNP C/T T C T
rs265599482
MGI SNP Detail
Alliance Variant		 Chr2:28457822 Gm13381 within coordinates of
Gtf3c5 Intron
Gtf3c5 Splice-Site
Rr553837 897 bp distal
 SNP C/G/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231304547
MGI SNP Detail
Alliance Variant		 Chr2:28457823 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 898 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255277413
MGI SNP Detail
Alliance Variant		 Chr2:28457863 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 938 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A G
rs256858264
MGI SNP Detail
Alliance Variant		 Chr2:28457899 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 974 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224352709
MGI SNP Detail
Alliance Variant		 Chr2:28457912 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 987 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A
rs248995080
MGI SNP Detail
Alliance Variant		 Chr2:28457918 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 993 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216862414
MGI SNP Detail
Alliance Variant		 Chr2:28457947 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1022 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T C
rs241912351
MGI SNP Detail
Alliance Variant		 Chr2:28457954 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1029 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A G
rs253080960
MGI SNP Detail
Alliance Variant		 Chr2:28457973 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1048 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs216142823
MGI SNP Detail
Alliance Variant		 Chr2:28458022 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1097 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T A
rs236974725
MGI SNP Detail
Alliance Variant		 Chr2:28458105 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1180 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T C
rs249340203
MGI SNP Detail
Alliance Variant		 Chr2:28458116 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1191 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218394361
MGI SNP Detail
Alliance Variant		 Chr2:28458248 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1323 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs229720037
MGI SNP Detail
Alliance Variant		 Chr2:28458259 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1334 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C
rs252997772
MGI SNP Detail
Alliance Variant		 Chr2:28458279 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1354 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs221836664
MGI SNP Detail
Alliance Variant		 Chr2:28458319 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1394 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249464940
MGI SNP Detail
Alliance Variant		 Chr2:28458338 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1413 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T C
rs263312227
MGI SNP Detail
Alliance Variant		 Chr2:28458345 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1420 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T C
rs582231422
MGI SNP Detail
Alliance Variant		 Chr2:28458404 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1479 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs585300222
MGI SNP Detail
Alliance Variant		 Chr2:28458406 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1481 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223552935
MGI SNP Detail
Alliance Variant		 Chr2:28458413 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1488 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T A
rs243631501
MGI SNP Detail
Alliance Variant		 Chr2:28458419 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1494 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C G
rs256822696
MGI SNP Detail
Alliance Variant		 Chr2:28458436 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1511 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C T
rs224267411
MGI SNP Detail
Alliance Variant		 Chr2:28458573 Gm13381 within coordinates of
Gtf3c5 Coding-Synonymous
Rr553837 1648 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G A
rs248915946
MGI SNP Detail
Alliance Variant		 Chr2:28458662 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1737 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs260768198
MGI SNP Detail
Alliance Variant		 Chr2:28458675 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1750 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232588563
MGI SNP Detail
Alliance Variant		 Chr2:28458689 Gm13381 within coordinates of
Gtf3c5 Intron
Rr553837 1764 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 100 of 110
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory