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Mouse SNP Summary
Symbol
Name
ID 		Rr554312
regulatory region 554312
MGI:8016444

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583350837
MGI SNP Detail
Alliance Variant		 Chr2:30302756 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1940 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226557773
MGI SNP Detail
Alliance Variant		 Chr2:30302814 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1882 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs3689602
MGI SNP Detail
Alliance Variant		 Chr2:30302848 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1848 bp proximal
 SNP G/T T T G G T G G T G G G T T G G T G G T G G G G G G G T G T G G G G G G G G G G T T T G T G G G
rs212754438
MGI SNP Detail
Alliance Variant		 Chr2:30302861 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1835 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227931750
MGI SNP Detail
Alliance Variant		 Chr2:30302983 Crat Coding-Synonymous
Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1713 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254541819
MGI SNP Detail
Alliance Variant		 Chr2:30303115 Crat Coding-Synonymous
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1581 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs13464645
MGI SNP Detail
Alliance Variant		 Chr2:30303141 Crat Coding-NonSynonymous
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1555 bp proximal
 SNP C/T C T T T
rs238384603
MGI SNP Detail
Alliance Variant		 Chr2:30303210 Crat Coding-NonSynonymous
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1486 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250950369
MGI SNP Detail
Alliance Variant		 Chr2:30303247 Crat Coding-Synonymous
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 1449 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs214053703
MGI SNP Detail
Alliance Variant		 Chr2:30303313 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1383 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231760946
MGI SNP Detail
Alliance Variant		 Chr2:30303348 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1348 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33634045
MGI SNP Detail
Alliance Variant		 Chr2:30303433 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1263 bp proximal
 SNP G/T G T T
rs33600584
MGI SNP Detail
Alliance Variant		 Chr2:30303434 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1262 bp proximal
 SNP A/G G A A
rs251730266
MGI SNP Detail
Alliance Variant		 Chr2:30303499 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1197 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260432481
MGI SNP Detail
Alliance Variant		 Chr2:30303532 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1164 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258423518
MGI SNP Detail
Alliance Variant		 Chr2:30303553 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1143 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G C G G G G G G G G G G G G
rs225804820
MGI SNP Detail
Alliance Variant		 Chr2:30303604 Crat Intron
Crat Noncoding-Transcript-Variant
Rr554312 1092 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C T C C C C C C C C C C C C
rs238840502
MGI SNP Detail
Alliance Variant		 Chr2:30303688 Crat Coding-NonSynonymous
Crat Intron
Crat Noncoding-Transcript-Variant
Rr554310 within coordinates of
Rr554312 1008 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264854370
MGI SNP Detail
Alliance Variant		 Chr2:30303722 Crat Coding-Synonymous
Crat Intron
Crat Noncoding-Transcript-Variant
Rr554310 within coordinates of
Rr554312 974 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs227549359
MGI SNP Detail
Alliance Variant		 Chr2:30303764 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 932 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260007134
MGI SNP Detail
Alliance Variant		 Chr2:30303994 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 702 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G G G A G G G G
rs217790544
MGI SNP Detail
Alliance Variant		 Chr2:30304028 Crat Intron
Crat Noncoding-Transcript-Variant
Crat Splice-Site
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 668 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C T C C C C
rs227372124
MGI SNP Detail
Alliance Variant		 Chr2:30304051 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 645 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214089742
MGI SNP Detail
Alliance Variant		 Chr2:30304107 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 589 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G T G G G G G G T G G G G
rs231125949
MGI SNP Detail
Alliance Variant		 Chr2:30304121 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 575 bp proximal
Tssr23369 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243459255
MGI SNP Detail
Alliance Variant		 Chr2:30304228 Crat Intron
Crat Noncoding-Transcript-Variant
Crat Splice-Site
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 468 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs212697927
MGI SNP Detail
Alliance Variant		 Chr2:30304249 Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 447 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs240629797
MGI SNP Detail
Alliance Variant		 Chr2:30304371 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Crat Splice-Site
Gm16323 within coordinates of
Rr554311 within coordinates of
Rr554312 325 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263934435
MGI SNP Detail
Alliance Variant		 Chr2:30304562 Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 134 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225208887
MGI SNP Detail
Alliance Variant		 Chr2:30304569 Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 127 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234167444
MGI SNP Detail
Alliance Variant		 Chr2:30304635 Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 61 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs252174159
MGI SNP Detail
Alliance Variant		 Chr2:30304722 Crat Coding-NonSynonymous
Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219673276
MGI SNP Detail
Alliance Variant		 Chr2:30304795 Crat Coding-NonSynonymous
Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs51523836
MGI SNP Detail
Alliance Variant		 Chr2:30304918 Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 within coordinates of
 SNP C C C
rs238131540
MGI SNP Detail
Alliance Variant		 Chr2:30305008 Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261949557
MGI SNP Detail
Alliance Variant		 Chr2:30305047 Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs220110254
MGI SNP Detail
Alliance Variant		 Chr2:30305125 Cpgi11436 within coordinates of
Crat Intron
Crat Noncoding-Transcript-Variant
Gm16323 within coordinates of
Rr554312 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs33114898
MGI SNP Detail
Alliance Variant		 Chr2:30305375 Cpgi11436 within coordinates of
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 within coordinates of
Tssr23371 within coordinates of
 SNP C/T T T C T C C C
rs29668065
MGI SNP Detail
Alliance Variant		 Chr2:30305514 Cpgi11436 within coordinates of
Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 within coordinates of
Tssr23375 within coordinates of
 SNP A/G G G A G A G A
rs227407287
MGI SNP Detail
Alliance Variant		 Chr2:30305595 Cpgi11436 within coordinates of
Crat Intron
Crat mRNA-UTR
Crat Noncoding-Transcript-Variant
Rr554312 70 bp distal
Rr554313 within coordinates of
Tssr23377 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs245104253
MGI SNP Detail
Alliance Variant		 Chr2:30305643 Cpgi11436 within coordinates of
Crat Intron
Crat mRNA-UTR
Rr554312 118 bp distal
Rr554313 within coordinates of
Tssr17115 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33660804
MGI SNP Detail
Alliance Variant		 Chr2:30305664 Cpgi11436 within coordinates of
Crat mRNA-UTR
Rr554312 139 bp distal
Rr554313 within coordinates of
Tssr17115 within coordinates of
Tssr23379 within coordinates of
 SNP C/T T C T C C C
rs224965247
MGI SNP Detail
Alliance Variant		 Chr2:30305680 Cpgi11436 within coordinates of
Crat mRNA-UTR
Rr554312 155 bp distal
Rr554313 within coordinates of
Tssr17115 within coordinates of
Tssr23379 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253546837
MGI SNP Detail
Alliance Variant		 Chr2:30305699 Cpgi11436 within coordinates of
Crat mRNA-UTR
Rr554312 174 bp distal
Rr554313 within coordinates of
Tssr23379 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs211719234
MGI SNP Detail
Alliance Variant		 Chr2:30305758 Cpgi11436 within coordinates of
Crat mRNA-UTR
Rr554312 233 bp distal
Rr554313 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243521321
MGI SNP Detail		 Chr2:30305918 Cpgi11436 within coordinates of
Rr554312 393 bp distal
Rr554313 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C
rs254248032
MGI SNP Detail		 Chr2:30306014 Cpgi11436 within coordinates of
Rr554312 489 bp distal
Rr554313 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs217495286
MGI SNP Detail		 Chr2:30306034 Cpgi11436 within coordinates of
Rr554312 509 bp distal
Rr554313 within coordinates of
Tssr23381 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G A G G G G
rs234257205
MGI SNP Detail
Alliance Variant		 Chr2:30306268 Cpgi11436 within coordinates of
Ptpa mRNA-UTR
Rr554312 743 bp distal
Rr554314 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs252262216
MGI SNP Detail
Alliance Variant		 Chr2:30306407 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 882 bp distal
Rr554314 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586592807
MGI SNP Detail
Alliance Variant		 Chr2:30306435 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 910 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs580587409
MGI SNP Detail
Alliance Variant		 Chr2:30306441 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 916 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs219703988
MGI SNP Detail
Alliance Variant		 Chr2:30306454 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 929 bp distal
Rr554314 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230755158
MGI SNP Detail
Alliance Variant		 Chr2:30306463 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 938 bp distal
Rr554314 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs260964116
MGI SNP Detail
Alliance Variant		 Chr2:30306488 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 963 bp distal
Rr554314 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A
rs226740158
MGI SNP Detail
Alliance Variant		 Chr2:30306646 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1121 bp distal
Rr554314 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs251271553
MGI SNP Detail
Alliance Variant		 Chr2:30306663 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1138 bp distal
Rr554314 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584579832
MGI SNP Detail
Alliance Variant		 Chr2:30306675 Cpgi11436 within coordinates of
Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1150 bp distal
Rr554314 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs264006229
MGI SNP Detail
Alliance Variant		 Chr2:30306747 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1222 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs221377133
MGI SNP Detail
Alliance Variant		 Chr2:30306776 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1251 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs239085136
MGI SNP Detail
Alliance Variant		 Chr2:30306812 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1287 bp distal
Rr554314 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs256068995
MGI SNP Detail
Alliance Variant		 Chr2:30306884 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1359 bp distal
Rr554314 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586429104
MGI SNP Detail
Alliance Variant		 Chr2:30306958 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1433 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs581309914
MGI SNP Detail
Alliance Variant		 Chr2:30306991 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1466 bp distal
Rr554314 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584934199
MGI SNP Detail
Alliance Variant		 Chr2:30307074 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1549 bp distal
Rr554314 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257737987
MGI SNP Detail
Alliance Variant		 Chr2:30307126 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1601 bp distal
Rr554314 within coordinates of
 SNP C C C
rs249637773
MGI SNP Detail
Alliance Variant		 Chr2:30307137 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1612 bp distal
Rr554314 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264494872
MGI SNP Detail
Alliance Variant		 Chr2:30307225 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1700 bp distal
Rr554314 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs233516697
MGI SNP Detail
Alliance Variant		 Chr2:30307245 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1720 bp distal
Rr554314 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A T A A A A A T A A A A A A A A A A A A A T A A A A
rs579416278
MGI SNP Detail
Alliance Variant		 Chr2:30307285 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1760 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582804556
MGI SNP Detail
Alliance Variant		 Chr2:30307317 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1792 bp distal
Rr554314 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs259719277
MGI SNP Detail
Alliance Variant		 Chr2:30307329 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1804 bp distal
Rr554314 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216279783
MGI SNP Detail
Alliance Variant		 Chr2:30307330 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1805 bp distal
Rr554314 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227674418
MGI SNP Detail
Alliance Variant		 Chr2:30307336 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1811 bp distal
Rr554314 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51011548
MGI SNP Detail
Alliance Variant		 Chr2:30307432 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1907 bp distal
Rr554314 within coordinates of
 SNP C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs578481544
MGI SNP Detail
Alliance Variant		 Chr2:30307446 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1921 bp distal
Rr554314 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581670357
MGI SNP Detail
Alliance Variant		 Chr2:30307447 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1922 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585749012
MGI SNP Detail
Alliance Variant		 Chr2:30307452 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1927 bp distal
Rr554314 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579801936
MGI SNP Detail
Alliance Variant		 Chr2:30307466 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1941 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582690211
MGI SNP Detail
Alliance Variant		 Chr2:30307468 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1943 bp distal
Rr554314 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs213882080
MGI SNP Detail
Alliance Variant		 Chr2:30307491 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1966 bp distal
Rr554314 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs237413162
MGI SNP Detail
Alliance Variant		 Chr2:30307499 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1974 bp distal
Rr554314 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs255616035
MGI SNP Detail
Alliance Variant		 Chr2:30307514 Ptpa Intron
Ptpa Noncoding-Transcript-Variant
Rr554312 1989 bp distal
Rr554314 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 83 of 83
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory