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Mouse SNP Summary
Symbol
Name
ID 		Rr554781
regulatory region 554781
MGI:8016913

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583494200
MGI SNP Detail
Alliance Variant		 Chr2:31943398 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1930 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27194899
MGI SNP Detail
Alliance Variant		 Chr2:31943408 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1920 bp proximal
 SNP A/G A A A A A G G
rs585355429
MGI SNP Detail
Alliance Variant		 Chr2:31943422 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1906 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239776168
MGI SNP Detail
Alliance Variant		 Chr2:31943452 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1876 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs580231063
MGI SNP Detail
Alliance Variant		 Chr2:31943475 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1853 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256943497
MGI SNP Detail
Alliance Variant		 Chr2:31943486 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1842 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A G A A A A A A A A A A A A A A A
rs583445040
MGI SNP Detail
Alliance Variant		 Chr2:31943517 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1811 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs587557737
MGI SNP Detail
Alliance Variant		 Chr2:31943565 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1763 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581662717
MGI SNP Detail
Alliance Variant		 Chr2:31943601 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1727 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27194898
MGI SNP Detail
Alliance Variant		 Chr2:31943622 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1706 bp proximal
 SNP C/G C C C C C C G C C C G C C G C
rs583937085
MGI SNP Detail
Alliance Variant		 Chr2:31943661 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1667 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586806993
MGI SNP Detail
Alliance Variant		 Chr2:31943700 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1628 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G A G G G A
rs245543960
MGI SNP Detail
Alliance Variant		 Chr2:31943740 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1588 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27194897
MGI SNP Detail
Alliance Variant		 Chr2:31943744 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1584 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs228134452
MGI SNP Detail
Alliance Variant		 Chr2:31943776 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1552 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242774033
MGI SNP Detail
Alliance Variant		 Chr2:31943779 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1549 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260508311
MGI SNP Detail
Alliance Variant		 Chr2:31943826 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1502 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs228024015
MGI SNP Detail
Alliance Variant		 Chr2:31943827 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1501 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs246366051
MGI SNP Detail
Alliance Variant		 Chr2:31943845 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1483 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216342243
MGI SNP Detail
Alliance Variant		 Chr2:31943852 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1476 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27194896
MGI SNP Detail
Alliance Variant		 Chr2:31943882 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1446 bp proximal
 SNP A/G A A A A A A A A A A G A A G A
rs27194895
MGI SNP Detail
Alliance Variant		 Chr2:31943926 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1402 bp proximal
 SNP C/T C C C C C C C C C C C C T C
rs212945763
MGI SNP Detail
Alliance Variant		 Chr2:31943936 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Nup214 mRNA-UTR
Rr554781 1392 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C G C C G C C C C C C C G C C C C
rs580689836
MGI SNP Detail
Alliance Variant		 Chr2:31944189 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1139 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584627207
MGI SNP Detail
Alliance Variant		 Chr2:31944326 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1002 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C A C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs578652676
MGI SNP Detail
Alliance Variant		 Chr2:31944384 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 944 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G G C G G G G G G G G G G G
rs236698402
MGI SNP Detail
Alliance Variant		 Chr2:31944434 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 894 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G C G G G C G G C G G G G G G G G C G C
rs27194894
MGI SNP Detail
Alliance Variant		 Chr2:31944543 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 785 bp proximal
 SNP A/G G G G G G G G G G G A G G A G
rs217026646
MGI SNP Detail
Alliance Variant		 Chr2:31944596 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 732 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A A A A A A A A G A
rs233789683
MGI SNP Detail
Alliance Variant		 Chr2:31944600 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 728 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27194893
MGI SNP Detail
Alliance Variant		 Chr2:31944633 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 695 bp proximal
 SNP A/C A A A A A A A A A A C A A A A
rs251490343
MGI SNP Detail
Alliance Variant		 Chr2:31944662 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 666 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G C G C
rs27194892
MGI SNP Detail
Alliance Variant		 Chr2:31944664 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 664 bp proximal
 SNP A/C C C C C C C C C C C A C C A C
rs242917223
MGI SNP Detail
Alliance Variant		 Chr2:31944692 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 636 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C T
rs261272281
MGI SNP Detail
Alliance Variant		 Chr2:31944696 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 632 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581424589
MGI SNP Detail
Alliance Variant		 Chr2:31944728 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 600 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219995594
MGI SNP Detail
Alliance Variant		 Chr2:31944732 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 596 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A
rs242713229
MGI SNP Detail
Alliance Variant		 Chr2:31944789 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 539 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260592693
MGI SNP Detail
Alliance Variant		 Chr2:31944790 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 538 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228089518
MGI SNP Detail
Alliance Variant		 Chr2:31944808 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 520 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240359043
MGI SNP Detail
Alliance Variant		 Chr2:31944945 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 383 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262717473
MGI SNP Detail
Alliance Variant		 Chr2:31944951 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 377 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27194891
MGI SNP Detail
Alliance Variant		 Chr2:31945001 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 327 bp proximal
 SNP C/G C C C C C C C C C C G C C G C
rs250912867
MGI SNP Detail
Alliance Variant		 Chr2:31945004 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 324 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27194890
MGI SNP Detail
Alliance Variant		 Chr2:31945041 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 287 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs223544844
MGI SNP Detail
Alliance Variant		 Chr2:31945089 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 239 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs247533497
MGI SNP Detail
Alliance Variant		 Chr2:31945105 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 223 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs27194889
MGI SNP Detail
Alliance Variant		 Chr2:31945154 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 174 bp proximal
 SNP C/T T T T T T T T T T T C T T C T
rs233911746
MGI SNP Detail
Alliance Variant		 Chr2:31945254 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 74 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs251482434
MGI SNP Detail
Alliance Variant		 Chr2:31945271 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 57 bp proximal
 SNP A/G/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215127715
MGI SNP Detail
Alliance Variant		 Chr2:31945296 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 32 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs237753836
MGI SNP Detail
Alliance Variant		 Chr2:31945405 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs256075030
MGI SNP Detail
Alliance Variant		 Chr2:31945416 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs219844011
MGI SNP Detail
Alliance Variant		 Chr2:31945425 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242426511
MGI SNP Detail
Alliance Variant		 Chr2:31945443 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254048368
MGI SNP Detail
Alliance Variant		 Chr2:31945460 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27194888
MGI SNP Detail
Alliance Variant		 Chr2:31945504 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP G/T G G G G G G G G G G T G G T G
rs240547023
MGI SNP Detail
Alliance Variant		 Chr2:31945530 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265247936
MGI SNP Detail
Alliance Variant		 Chr2:31945556 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27194887
MGI SNP Detail
Alliance Variant		 Chr2:31945585 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs584597706
MGI SNP Detail
Alliance Variant		 Chr2:31945760 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs578848585
MGI SNP Detail
Alliance Variant		 Chr2:31945767 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs244910403
MGI SNP Detail
Alliance Variant		 Chr2:31945770 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T C T T C C T T T C T T C T T T C T T T C T C T C
rs262014500
MGI SNP Detail
Alliance Variant		 Chr2:31945785 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs223649747
MGI SNP Detail
Alliance Variant		 Chr2:31945800 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 9 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
rs247470014
MGI SNP Detail
Alliance Variant		 Chr2:31945878 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 87 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259144548
MGI SNP Detail
Alliance Variant		 Chr2:31945914 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 123 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs227896883
MGI SNP Detail
Alliance Variant		 Chr2:31945915 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 124 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs252731931
MGI SNP Detail
Alliance Variant		 Chr2:31945940 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 149 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T C T T T T T T T C T T T T
rs586284002
MGI SNP Detail
Alliance Variant		 Chr2:31946004 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 213 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs578476377
MGI SNP Detail
Alliance Variant		 Chr2:31946041 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 250 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215464861
MGI SNP Detail
Alliance Variant		 Chr2:31946055 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 264 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C
rs581945078
MGI SNP Detail
Alliance Variant		 Chr2:31946065 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 274 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585854005
MGI SNP Detail
Alliance Variant		 Chr2:31946126 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 335 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579793044
MGI SNP Detail
Alliance Variant		 Chr2:31946285 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 494 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583235729
MGI SNP Detail
Alliance Variant		 Chr2:31946288 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 497 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585717270
MGI SNP Detail
Alliance Variant		 Chr2:31946345 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 554 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A A A A A G A A
rs580070200
MGI SNP Detail
Alliance Variant		 Chr2:31946349 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 558 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C T T T T T T C T T T T T T C T T
rs584117193
MGI SNP Detail
Alliance Variant		 Chr2:31946371 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 580 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587512117
MGI SNP Detail
Alliance Variant		 Chr2:31946393 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 602 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G G G G A G A G A
rs236438057
MGI SNP Detail
Alliance Variant		 Chr2:31946413 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 622 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254555275
MGI SNP Detail
Alliance Variant		 Chr2:31946449 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 658 bp distal
 SNP A/C C C C A A C C C A C C C C C C C C C C A C C A A C A C C C C C A A C C C C A A C C C C C A C C C
rs580872159
MGI SNP Detail
Alliance Variant		 Chr2:31946539 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 748 bp distal
Rr554782 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211796097
MGI SNP Detail
Alliance Variant		 Chr2:31946544 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 753 bp distal
Rr554782 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs27194885
MGI SNP Detail
Alliance Variant		 Chr2:31946568 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 777 bp distal
Rr554782 within coordinates of
 SNP A/G A A A A A A A A A G A A G A
rs254039627
MGI SNP Detail
Alliance Variant		 Chr2:31946590 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 799 bp distal
Rr554782 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs221524292
MGI SNP Detail
Alliance Variant		 Chr2:31946594 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 803 bp distal
Rr554782 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233860587
MGI SNP Detail
Alliance Variant		 Chr2:31946611 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 820 bp distal
Rr554782 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs257812394
MGI SNP Detail
Alliance Variant		 Chr2:31946684 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 893 bp distal
Rr554782 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222106044
MGI SNP Detail
Alliance Variant		 Chr2:31946753 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 962 bp distal
Rr554782 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs242001709
MGI SNP Detail
Alliance Variant		 Chr2:31946875 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1084 bp distal
Rr554782 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs264608619
MGI SNP Detail
Alliance Variant		 Chr2:31946898 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1107 bp distal
Rr554782 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218111822
MGI SNP Detail
Alliance Variant		 Chr2:31946906 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1115 bp distal
Rr554782 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241769874
MGI SNP Detail
Alliance Variant		 Chr2:31946928 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1137 bp distal
Rr554782 within coordinates of
 SNP A/G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G A G T G G G G G G G T G G G G G G G G G G G G T G T
rs259073085
MGI SNP Detail
Alliance Variant		 Chr2:31946993 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1202 bp distal
Rr554782 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs582892410
MGI SNP Detail
Alliance Variant		 Chr2:31947044 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1253 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227665446
MGI SNP Detail
Alliance Variant		 Chr2:31947119 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1328 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257367617
MGI SNP Detail
Alliance Variant		 Chr2:31947123 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1332 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs262945757
MGI SNP Detail
Alliance Variant		 Chr2:31947144 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1353 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230678408
MGI SNP Detail
Alliance Variant		 Chr2:31947241 Fam78a Intron
Fam78a Noncoding-Transcript-Variant
Gm16534 within coordinates of
Rr554781 1450 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 100 of 114
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory