About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Rr554848
regulatory region 554848
MGI:8016980

<< first < prev12 next > last >>
Showing SNP(s) 1 - 100 of 108

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230410644
MGI SNP Detail		 Chr2:32124572 Gm13610 within coordinates of
Rr554848 1824 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586754647
MGI SNP Detail		 Chr2:32124590 Gm13610 within coordinates of
Rr554848 1806 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C
rs28236447
MGI SNP Detail		 Chr2:32124602 Gm13610 within coordinates of
Rr554848 1794 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs212308907
MGI SNP Detail		 Chr2:32124613 Gm13610 within coordinates of
Rr554848 1783 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs28236446
MGI SNP Detail		 Chr2:32124660 Gm13610 within coordinates of
Rr554848 1736 bp proximal
 SNP G/T T T T T T T T T T T T G
rs254119298
MGI SNP Detail		 Chr2:32124687 Gm13610 within coordinates of
Rr554848 1709 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T
rs28236445
MGI SNP Detail		 Chr2:32124689 Gm13610 within coordinates of
Rr554848 1707 bp proximal
 SNP A/T A A A A A A A A A A T A A T
rs239560880
MGI SNP Detail		 Chr2:32124734 Gm13610 within coordinates of
Rr554848 1662 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257504754
MGI SNP Detail		 Chr2:32124763 Gm13610 within coordinates of
Rr554848 1633 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221709636
MGI SNP Detail		 Chr2:32124791 Gm13610 within coordinates of
Rr554848 1605 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236640342
MGI SNP Detail		 Chr2:32124804 Gm13610 within coordinates of
Rr554848 1592 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248163617
MGI SNP Detail		 Chr2:32124808 Gm13610 within coordinates of
Rr554848 1588 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs28236444
MGI SNP Detail		 Chr2:32124820 Gm13610 within coordinates of
Rr554848 1576 bp proximal
 SNP G/T G G G G G G T G G G G G G G T
rs240757515
MGI SNP Detail		 Chr2:32124836 Gm13610 within coordinates of
Rr554848 1560 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265967649
MGI SNP Detail		 Chr2:32124859 Gm13610 within coordinates of
Rr554848 1537 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs232509710
MGI SNP Detail		 Chr2:32124880 Gm13610 within coordinates of
Rr554848 1516 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs248009605
MGI SNP Detail		 Chr2:32124964 Gm13610 within coordinates of
Rr554848 1432 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C
rs262800127
MGI SNP Detail		 Chr2:32125040 Gm13610 within coordinates of
Rr554848 1356 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230314991
MGI SNP Detail		 Chr2:32125049 Gm13610 within coordinates of
Rr554848 1347 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs244605564
MGI SNP Detail		 Chr2:32125065 Gm13610 within coordinates of
Rr554848 1331 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs212472517
MGI SNP Detail		 Chr2:32125072 Gm13610 within coordinates of
Rr554848 1324 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229470917
MGI SNP Detail		 Chr2:32125098 Gm13610 within coordinates of
Rr554848 1298 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580888791
MGI SNP Detail		 Chr2:32125327 Gm13610 within coordinates of
Rr554848 1069 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248314664
MGI SNP Detail		 Chr2:32125328 Gm13610 within coordinates of
Rr554848 1068 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T T T T T T T T T T C C
rs217500188
MGI SNP Detail		 Chr2:32125359 Gm13610 within coordinates of
Rr554848 1037 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237607155
MGI SNP Detail		 Chr2:32125365 Gm13610 within coordinates of
Rr554848 1031 bp proximal
 SNP C/G/T T T T T T T T T T T T T T T T T T T T G T T C T T T T C T C T T T C T T T C T T C T T T T T T T C T G C C
rs262340179
MGI SNP Detail		 Chr2:32125390 Gm13610 within coordinates of
Rr554848 1006 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213303055
MGI SNP Detail		 Chr2:32125399 Gm13610 within coordinates of
Rr554848 997 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230456877
MGI SNP Detail		 Chr2:32125472 Gm13610 within coordinates of
Rr554848 924 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C
rs28236443
MGI SNP Detail		 Chr2:32125524 Gm13610 within coordinates of
Rr554848 872 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs28236442
MGI SNP Detail		 Chr2:32125551 Gm13610 within coordinates of
Rr554848 845 bp proximal
 SNP A/G A A A A A A G A A A G A A G A
rs28236441
MGI SNP Detail		 Chr2:32125607 Gm13610 within coordinates of
Rr554848 789 bp proximal
 SNP C/T C C C C C C T C C C T C C T C
rs259268527
MGI SNP Detail		 Chr2:32125646 Gm13610 within coordinates of
Rr554848 750 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs28236440
MGI SNP Detail		 Chr2:32125648 Gm13610 within coordinates of
Rr554848 748 bp proximal
 SNP A/G G G G G G G A G G G A G G A G
rs28236439
MGI SNP Detail		 Chr2:32125681 Gm13610 within coordinates of
Rr554848 715 bp proximal
 SNP C/T T T T T C T C
rs265343862
MGI SNP Detail		 Chr2:32125736 Gm13610 within coordinates of
Rr554848 660 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T C T T
rs219613584
MGI SNP Detail		 Chr2:32125770 Gm13610 within coordinates of
Rr554848 626 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A G A A
rs238187171
MGI SNP Detail		 Chr2:32125845 Gm13610 within coordinates of
Rr554848 551 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs256372695
MGI SNP Detail		 Chr2:32125885 Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 511 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs229527001
MGI SNP Detail		 Chr2:32125890 Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 506 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs248379422
MGI SNP Detail		 Chr2:32125894 Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 502 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs263756723
MGI SNP Detail		 Chr2:32126040 Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 356 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs232469604
MGI SNP Detail		 Chr2:32126050 Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 346 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G C G
rs251281039
MGI SNP Detail		 Chr2:32126077 Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 319 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G T G G G G G G T G G G G G G G G G T G G
rs213970362
MGI SNP Detail		 Chr2:32126215 Cpgi11499 within coordinates of
Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 181 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs230413004
MGI SNP Detail		 Chr2:32126219 Cpgi11499 within coordinates of
Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 177 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241963357
MGI SNP Detail		 Chr2:32126236 Cpgi11499 within coordinates of
Gm13610 within coordinates of
Rr554847 within coordinates of
Rr554848 160 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G
rs28236438
MGI SNP Detail
Alliance Variant		 Chr2:32126331 Cpgi11499 within coordinates of
Gm13610 within coordinates of
Pomt1 mRNA-UTR
Rr554847 within coordinates of
Rr554848 65 bp proximal
 SNP A/G A A A A A A G A A A G A A G
rs28236437
MGI SNP Detail
Alliance Variant		 Chr2:32126382 Cpgi11499 within coordinates of
Gm13610 within coordinates of
Pomt1 Intron
Pomt1 Splice-Site
Rr554847 within coordinates of
Rr554848 14 bp proximal
Tssr23467 within coordinates of
 SNP C/T T T T T T T C T T T C T T C
rs28236436
MGI SNP Detail
Alliance Variant		 Chr2:32126393 Cpgi11499 within coordinates of
Gm13610 within coordinates of
Pomt1 Intron
Rr554847 within coordinates of
Rr554848 3 bp proximal
Tssr23468 within coordinates of
 SNP G/T T T T T T T G T T T G T T G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224061527
MGI SNP Detail
Alliance Variant		 Chr2:32126545 Cpgi11499 within coordinates of
Pomt1 Intron
Rr554848 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238933940
MGI SNP Detail
Alliance Variant		 Chr2:32126574 Cpgi11499 within coordinates of
Pomt1 Intron
Rr554848 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28236435
MGI SNP Detail
Alliance Variant		 Chr2:32126590 Cpgi11499 within coordinates of
Pomt1 Intron
Rr554848 within coordinates of
 SNP A/G G G G G G G A G G G G G
rs258031861
MGI SNP Detail
Alliance Variant		 Chr2:32126592 Cpgi11499 within coordinates of
Pomt1 Intron
Rr554848 within coordinates of
Tssr17254 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219748597
MGI SNP Detail
Alliance Variant		 Chr2:32126593 Cpgi11499 within coordinates of
Pomt1 Intron
Rr554848 within coordinates of
Tssr17254 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T C T T
rs238249749
MGI SNP Detail
Alliance Variant		 Chr2:32126595 Cpgi11499 within coordinates of
Pomt1 Intron
Rr554848 within coordinates of
Tssr17254 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T G T T
rs256056579
MGI SNP Detail
Alliance Variant		 Chr2:32126621 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Rr554848 9 bp distal
Tssr17255 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A T
rs223542485
MGI SNP Detail
Alliance Variant		 Chr2:32126645 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Rr554848 33 bp distal
Tssr17256 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs247903579
MGI SNP Detail
Alliance Variant		 Chr2:32126733 Cpgi11499 within coordinates of
Pomt1 Coding-NonSynonymous
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 121 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A G A A
rs265821239
MGI SNP Detail
Alliance Variant		 Chr2:32126753 Cpgi11499 within coordinates of
Pomt1 Coding-Synonymous
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Pomt1 Splice-Site
Rr554848 141 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231885666
MGI SNP Detail
Alliance Variant		 Chr2:32126833 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 221 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A G A A
rs256662974
MGI SNP Detail
Alliance Variant		 Chr2:32126858 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 246 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28236434
MGI SNP Detail
Alliance Variant		 Chr2:32126859 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 247 bp distal
 SNP A/G G G G G G G G G G G G G G A
rs224036591
MGI SNP Detail
Alliance Variant		 Chr2:32126868 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 256 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242124548
MGI SNP Detail
Alliance Variant		 Chr2:32126940 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 328 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs217064109
MGI SNP Detail
Alliance Variant		 Chr2:32126943 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 331 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs234022745
MGI SNP Detail
Alliance Variant		 Chr2:32127012 Cpgi11499 within coordinates of
Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 400 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T C T T
rs579340145
MGI SNP Detail
Alliance Variant		 Chr2:32127112 Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 500 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs28236433
MGI SNP Detail
Alliance Variant		 Chr2:32127165 Pomt1 Intron
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 553 bp distal
 SNP A/G A A A A A A A A A G A A G
rs28236432
MGI SNP Detail
Alliance Variant		 Chr2:32127438 Pomt1 Coding-NonSynonymous
Pomt1 mRNA-UTR
Pomt1 Noncoding-Transcript-Variant
Rr554848 826 bp distal
 SNP A/G G G G G G G G G G G G G G A
rs236862495
MGI SNP Detail
Alliance Variant		 Chr2:32127563 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 951 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T G T T
rs261920999
MGI SNP Detail
Alliance Variant		 Chr2:32127594 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 982 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C A C C
rs218757099
MGI SNP Detail
Alliance Variant		 Chr2:32127595 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 983 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G A G G
rs230826570
MGI SNP Detail
Alliance Variant		 Chr2:32127596 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 984 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T A T T
rs249807077
MGI SNP Detail
Alliance Variant		 Chr2:32127774 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1162 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223515356
MGI SNP Detail
Alliance Variant		 Chr2:32127784 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1172 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250300729
MGI SNP Detail
Alliance Variant		 Chr2:32127810 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1198 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G A G G
rs259838504
MGI SNP Detail
Alliance Variant		 Chr2:32127865 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1253 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs224617830
MGI SNP Detail
Alliance Variant		 Chr2:32127879 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1267 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs244612260
MGI SNP Detail
Alliance Variant		 Chr2:32127935 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1323 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255672558
MGI SNP Detail
Alliance Variant		 Chr2:32127959 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1347 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G G G G G G G G A A
rs224719984
MGI SNP Detail
Alliance Variant		 Chr2:32127968 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1356 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs582418458
MGI SNP Detail
Alliance Variant		 Chr2:32128000 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1388 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs235670932
MGI SNP Detail
Alliance Variant		 Chr2:32128031 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1419 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs259660592
MGI SNP Detail
Alliance Variant		 Chr2:32128075 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1463 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T G T T
rs232816670
MGI SNP Detail
Alliance Variant		 Chr2:32128077 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1465 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C T C C
rs257907370
MGI SNP Detail
Alliance Variant		 Chr2:32128099 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1487 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs215311874
MGI SNP Detail
Alliance Variant		 Chr2:32128119 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1507 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T C T T C T T T T T T T C T C C C
rs231085508
MGI SNP Detail
Alliance Variant		 Chr2:32128131 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1519 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244998394
MGI SNP Detail
Alliance Variant		 Chr2:32128151 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1539 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T C T T
rs212711279
MGI SNP Detail
Alliance Variant		 Chr2:32128196 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1584 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C T C C
rs229829683
MGI SNP Detail
Alliance Variant		 Chr2:32128226 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1614 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A G A A G A A A A A A A G A G G G
rs249766448
MGI SNP Detail
Alliance Variant		 Chr2:32128233 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1621 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A G A A
rs217644878
MGI SNP Detail
Alliance Variant		 Chr2:32128256 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1644 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A G A A
rs239558183
MGI SNP Detail
Alliance Variant		 Chr2:32128259 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1647 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs584648753
MGI SNP Detail
Alliance Variant		 Chr2:32128292 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1680 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A G A A
rs263370334
MGI SNP Detail
Alliance Variant		 Chr2:32128326 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1714 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C T C C
rs28236431
MGI SNP Detail
Alliance Variant		 Chr2:32128355 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1743 bp distal
 SNP G/T T T T T T T G T T T G T T G
rs247263170
MGI SNP Detail
Alliance Variant		 Chr2:32128390 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1778 bp distal
 SNP C/G/T C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C T C G C C
rs250115517
MGI SNP Detail
Alliance Variant		 Chr2:32128393 Pomt1 Intron
Pomt1 Noncoding-Transcript-Variant
Rr554848 1781 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T C T T
<< first < prev12 next > last >>
Showing SNP(s) 1 - 100 of 108
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory