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Mouse SNP Summary
Symbol
Name
ID
Rr555854
regulatory region 555854
MGI:8017986

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29781174
MGI SNP Detail
Alliance Variant
Chr2:35987886 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555853 within coordinates of
Rr555854 1921 bp proximal
SNP C/T C C C T C C C
rs215282419
MGI SNP Detail
Alliance Variant
Chr2:35987913 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555853 within coordinates of
Rr555854 1894 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs238737269
MGI SNP Detail
Alliance Variant
Chr2:35987922 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555853 within coordinates of
Rr555854 1885 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27179050
MGI SNP Detail
Alliance Variant
Chr2:35987928 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555853 within coordinates of
Rr555854 1879 bp proximal
SNP A/G G G G G G G G G G A G G G G
rs262125819
MGI SNP Detail
Alliance Variant
Chr2:35988078 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555853 within coordinates of
Rr555854 1729 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27179049
MGI SNP Detail
Alliance Variant
Chr2:35988188 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1619 bp proximal
SNP A/T A A A A A A T A A A A A T A
rs236593105
MGI SNP Detail
Alliance Variant
Chr2:35988251 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1556 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249117599
MGI SNP Detail
Alliance Variant
Chr2:35988252 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1555 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222308955
MGI SNP Detail
Alliance Variant
Chr2:35988279 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1528 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27179048
MGI SNP Detail
Alliance Variant
Chr2:35988310 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1497 bp proximal
SNP A/G G G G G G G G G G A G G G G
rs241884662
MGI SNP Detail
Alliance Variant
Chr2:35988565 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1242 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251550673
MGI SNP Detail
Alliance Variant
Chr2:35988583 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1224 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G A G G G G G G G G G G G G
rs223829940
MGI SNP Detail
Alliance Variant
Chr2:35988588 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1219 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C C
rs245950321
MGI SNP Detail
Alliance Variant
Chr2:35988657 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1150 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs265012363
MGI SNP Detail
Alliance Variant
Chr2:35988696 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1111 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27179047
MGI SNP Detail
Alliance Variant
Chr2:35988835 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 972 bp proximal
SNP A/G G G G G G G A G G A G G A G
rs27179046
MGI SNP Detail
Alliance Variant
Chr2:35988933 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 874 bp proximal
SNP A/G G G G G G G A G G G G G A G
rs256632422
MGI SNP Detail
Alliance Variant
Chr2:35989148 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 659 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228463217
MGI SNP Detail
Alliance Variant
Chr2:35989169 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 638 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27179045
MGI SNP Detail
Alliance Variant
Chr2:35989348 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 459 bp proximal
SNP C/T C C C C C C C C C T C C C C
rs248816147
MGI SNP Detail
Alliance Variant
Chr2:35989359 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 448 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259060218
MGI SNP Detail
Alliance Variant
Chr2:35989427 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 380 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27179044
MGI SNP Detail
Alliance Variant
Chr2:35989466 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 341 bp proximal
SNP A/G G G G G G G A G G G G G G G
rs27179043
MGI SNP Detail
Alliance Variant
Chr2:35989529 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 278 bp proximal
SNP C/T C C C C C C T C C C C C T C
rs215377159
MGI SNP Detail
Alliance Variant
Chr2:35989559 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 248 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27179042
MGI SNP Detail
Alliance Variant
Chr2:35989651 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 156 bp proximal
SNP A/G A A A G A A G A A G A
rs243354057
MGI SNP Detail
Alliance Variant
Chr2:35989657 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 150 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216945878
MGI SNP Detail
Alliance Variant
Chr2:35989675 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 132 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235419716
MGI SNP Detail
Alliance Variant
Chr2:35989722 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 85 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251606750
MGI SNP Detail
Alliance Variant
Chr2:35989776 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 31 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs225287661
MGI SNP Detail
Alliance Variant
Chr2:35989821 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs240591710
MGI SNP Detail
Alliance Variant
Chr2:35989828 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs256729247
MGI SNP Detail
Alliance Variant
Chr2:35989882 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27179041
MGI SNP Detail
Alliance Variant
Chr2:35990113 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 62 bp distal
SNP A/G G G G G G G A G G G G G A G
rs580227947
MGI SNP Detail
Alliance Variant
Chr2:35990254 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 203 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236995506
MGI SNP Detail
Alliance Variant
Chr2:35990281 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 230 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs256545516
MGI SNP Detail
Alliance Variant
Chr2:35990314 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 263 bp distal
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222578176
MGI SNP Detail
Alliance Variant
Chr2:35990317 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 266 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242643872
MGI SNP Detail
Alliance Variant
Chr2:35990323 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 272 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27179040
MGI SNP Detail
Alliance Variant
Chr2:35990343 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 292 bp distal
SNP A/G G G G G G G A G G G G G A G
rs232312540
MGI SNP Detail
Alliance Variant
Chr2:35990378 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 327 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs27179039
MGI SNP Detail
Alliance Variant
Chr2:35990385 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 334 bp distal
SNP C/T T T T T T T T T T T T T C T
rs262802091
MGI SNP Detail
Alliance Variant
Chr2:35990405 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 354 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs223553791
MGI SNP Detail
Alliance Variant
Chr2:35990431 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 380 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243270339
MGI SNP Detail
Alliance Variant
Chr2:35990454 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 403 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27179038
MGI SNP Detail
Alliance Variant
Chr2:35990460 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 409 bp distal
SNP C/T C C C C C C C C C C C C T C
rs27179037
MGI SNP Detail
Alliance Variant
Chr2:35990538 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 487 bp distal
SNP A/C C C C C C C A C C C C C C
rs245478918
MGI SNP Detail
Alliance Variant
Chr2:35990540 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 489 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs217606952
MGI SNP Detail
Alliance Variant
Chr2:35990563 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 512 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236530848
MGI SNP Detail
Alliance Variant
Chr2:35990576 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 525 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262649559
MGI SNP Detail
Alliance Variant
Chr2:35990577 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 526 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs223061610
MGI SNP Detail
Alliance Variant
Chr2:35990630 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 579 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27179036
MGI SNP Detail
Alliance Variant
Chr2:35990648 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 597 bp distal
SNP A/G G G G G G G G G G G G G A G
rs250251423
MGI SNP Detail
Alliance Variant
Chr2:35990701 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 650 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs222399526
MGI SNP Detail
Alliance Variant
Chr2:35990735 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 684 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242652926
MGI SNP Detail
Alliance Variant
Chr2:35990761 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 710 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs258491879
MGI SNP Detail
Alliance Variant
Chr2:35990822 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 771 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs225205817
MGI SNP Detail
Alliance Variant
Chr2:35990940 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 889 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587454379
MGI SNP Detail
Alliance Variant
Chr2:35991040 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 989 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243142706
MGI SNP Detail
Alliance Variant
Chr2:35991183 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1132 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T
rs27179035
MGI SNP Detail
Alliance Variant
Chr2:35991221 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1170 bp distal
SNP C/T T T T T C T T T T T T T T T T T C
rs27179034
MGI SNP Detail
Alliance Variant
Chr2:35991298 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1247 bp distal
SNP C/T T T T T T T C T T T T T T T
rs581622533
MGI SNP Detail
Alliance Variant
Chr2:35991341 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1290 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C
rs236768436
MGI SNP Detail
Alliance Variant
Chr2:35991405 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1354 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259231657
MGI SNP Detail
Alliance Variant
Chr2:35991412 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1361 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229356009
MGI SNP Detail
Alliance Variant
Chr2:35991491 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1440 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257623057
MGI SNP Detail
Alliance Variant
Chr2:35991582 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1531 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217142373
MGI SNP Detail
Alliance Variant
Chr2:35991608 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1557 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A
rs230521399
MGI SNP Detail
Alliance Variant
Chr2:35991660 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1609 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251907108
MGI SNP Detail
Alliance Variant
Chr2:35991666 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1615 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212440142
MGI SNP Detail
Alliance Variant
Chr2:35991677 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1626 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs229673470
MGI SNP Detail
Alliance Variant
Chr2:35991683 D2Mit372 within coordinates of
Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1632 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A
rs250066992
MGI SNP Detail
Alliance Variant
Chr2:35991684 D2Mit372 within coordinates of
Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1633 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs3699934
MGI SNP Detail
Alliance Variant
Chr2:35991688 D2Mit372 within coordinates of
Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1637 bp distal
SNP G/T T G T T
rs236127261
MGI SNP Detail
Alliance Variant
Chr2:35991854 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1803 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262762590
MGI SNP Detail
Alliance Variant
Chr2:35991957 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1906 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224892069
MGI SNP Detail
Alliance Variant
Chr2:35991999 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1948 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs245808433
MGI SNP Detail
Alliance Variant
Chr2:35992000 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1949 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257884468
MGI SNP Detail
Alliance Variant
Chr2:35992006 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1955 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs217903774
MGI SNP Detail
Alliance Variant
Chr2:35992008 Lhx6 Intron
Lhx6 Noncoding-Transcript-Variant
Rr555854 1957 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 80 of 80

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory