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Mouse SNP Summary
Symbol
Name
ID
Rr558601
regulatory region 558601
MGI:8020733

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27976848
MGI SNP Detail
Alliance Variant
Chr2:70606922 Rr558601 1993 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G C G G G G C
rs234330277
MGI SNP Detail
Alliance Variant
Chr2:70606946 Rr558601 1969 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs248957513
MGI SNP Detail
Alliance Variant
Chr2:70606947 Rr558601 1968 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs215277954
MGI SNP Detail
Alliance Variant
Chr2:70607002 Rr558601 1913 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234816860
MGI SNP Detail
Alliance Variant
Chr2:70607031 Rr558601 1884 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T C C T T T T T T T T T T T T T T T T T T C T T C T
rs27976847
MGI SNP Detail
Alliance Variant
Chr2:70607072 Rr558601 1843 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A G A A A A A A A A
rs215573884
MGI SNP Detail
Alliance Variant
Chr2:70607114 Rr558601 1801 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs235046695
MGI SNP Detail
Alliance Variant
Chr2:70607123 Rr558601 1792 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs261736963
MGI SNP Detail
Alliance Variant
Chr2:70607341 Rr558601 1574 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226055652
MGI SNP Detail
Alliance Variant
Chr2:70607357 Rr558601 1558 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240646467
MGI SNP Detail
Alliance Variant
Chr2:70607373 Rr558601 1542 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27976846
MGI SNP Detail
Alliance Variant
Chr2:70607405 Rr558601 1510 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G A G G A G
rs220473800
MGI SNP Detail
Alliance Variant
Chr2:70607579 Rr558601 1336 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239663687
MGI SNP Detail
Alliance Variant
Chr2:70607601 Rr558601 1314 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A
rs255063840
MGI SNP Detail
Alliance Variant
Chr2:70607603 Rr558601 1312 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T A T
rs231190846
MGI SNP Detail
Alliance Variant
Chr2:70607744 Rr558601 1171 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27976845
MGI SNP Detail
Alliance Variant
Chr2:70607755 Rr558601 1160 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/C A A A C A A C A A C A
rs264835659
MGI SNP Detail
Alliance Variant
Chr2:70607825 Rr558601 1090 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A A A A A A A A A A A A A A A T A
rs583543640
MGI SNP Detail
Alliance Variant
Chr2:70607840 Rr558601 1075 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232977074
MGI SNP Detail
Alliance Variant
Chr2:70607872 Rr558601 1043 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248990508
MGI SNP Detail
Alliance Variant
Chr2:70607877 Rr558601 1038 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G G A A A G A A A A A A G A A A A A A A G A A G A
rs215310538
MGI SNP Detail
Alliance Variant
Chr2:70607890 Rr558601 1025 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228136529
MGI SNP Detail
Alliance Variant
Chr2:70607907 Rr558601 1008 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs245110545
MGI SNP Detail
Alliance Variant
Chr2:70608000 Rr558601 915 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214836182
MGI SNP Detail
Alliance Variant
Chr2:70608045 Rr558601 870 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586839283
MGI SNP Detail
Alliance Variant
Chr2:70608126 Rr558601 789 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236761460
MGI SNP Detail
Alliance Variant
Chr2:70608175 Rr558601 740 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs256647284
MGI SNP Detail
Alliance Variant
Chr2:70608217 Rr558601 698 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs218476739
MGI SNP Detail
Alliance Variant
Chr2:70608472 Rr558601 443 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235405874
MGI SNP Detail
Alliance Variant
Chr2:70608530 Rr558601 385 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253018964
MGI SNP Detail
Alliance Variant
Chr2:70608557 Rr558601 358 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220509944
MGI SNP Detail
Alliance Variant
Chr2:70608578 Rr558601 337 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs233364435
MGI SNP Detail
Alliance Variant
Chr2:70608702 Rr558601 213 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs261847070
MGI SNP Detail
Alliance Variant
Chr2:70608752 Rr558601 163 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs222997889
MGI SNP Detail
Alliance Variant
Chr2:70608759 Rr558601 156 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs244009957
MGI SNP Detail
Alliance Variant
Chr2:70608772 Rr558601 143 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs261914213
MGI SNP Detail
Alliance Variant
Chr2:70608798 Rr558601 117 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs222547165
MGI SNP Detail
Alliance Variant
Chr2:70608811 Rr558601 104 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs242602491
MGI SNP Detail
Alliance Variant
Chr2:70608879 Rr558601 36 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs258970081
MGI SNP Detail
Alliance Variant
Chr2:70608913 Rr558601 2 bp proximal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs228219519
MGI SNP Detail
Alliance Variant
Chr2:70608918 Rr558601 within coordinates of
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245146937
MGI SNP Detail
Alliance Variant
Chr2:70609111 Rr558601 175 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs581086038
MGI SNP Detail
Alliance Variant
Chr2:70609285 Rr558601 349 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs584208938
MGI SNP Detail
Alliance Variant
Chr2:70609288 Rr558601 352 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs265314698
MGI SNP Detail
Alliance Variant
Chr2:70609331 Rr558601 395 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227699450
MGI SNP Detail
Alliance Variant
Chr2:70609442 Rr558601 506 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27976844
MGI SNP Detail
Alliance Variant
Chr2:70609478 Rr558601 542 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T C T T T C T T C T
rs218519796
MGI SNP Detail
Alliance Variant
Chr2:70609488 Rr558601 552 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578398400
MGI SNP Detail
Alliance Variant
Chr2:70609713 Rr558601 777 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A
rs235435540
MGI SNP Detail
Alliance Variant
Chr2:70610022 Rr558601 1086 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245553417
MGI SNP Detail
Alliance Variant
Chr2:70610248 Rr558601 1312 bp distal
Rr558602 within coordinates of
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27976843
MGI SNP Detail
Alliance Variant
Chr2:70610331 Rr558601 1395 bp distal
Rr558602 within coordinates of
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C T C C T T C C T T
rs233398777
MGI SNP Detail
Alliance Variant
Chr2:70610333 Rr558601 1397 bp distal
Rr558602 within coordinates of
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs256835372
MGI SNP Detail
Alliance Variant
Chr2:70610411 Rr558601 1475 bp distal
Rr558602 within coordinates of
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs222760871
MGI SNP Detail
Alliance Variant
Chr2:70610527 Rr558601 1591 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs234285816
MGI SNP Detail
Alliance Variant
Chr2:70610597 Rr558601 1661 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs261528651
MGI SNP Detail
Alliance Variant
Chr2:70610614 Rr558601 1678 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222694781
MGI SNP Detail
Alliance Variant
Chr2:70610719 Rr558601 1783 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242728064
MGI SNP Detail
Alliance Variant
Chr2:70610853 Rr558601 1917 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs259004166
MGI SNP Detail
Alliance Variant
Chr2:70610866 Rr558601 1930 bp distal
Tlk1 Intron
Tlk1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 60 of 60

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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