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Mouse SNP Summary
Symbol
Name
ID 		Rr559118
regulatory region 559118
MGI:8021250

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581995730
MGI SNP Detail
Alliance Variant		 Chr2:73099932 Rr559118 1847 bp proximal
Sp9 Intron
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250685650
MGI SNP Detail
Alliance Variant		 Chr2:73099994 Rr559118 1785 bp proximal
Sp9 Intron
 SNP A/G A G
rs254005356
MGI SNP Detail
Alliance Variant		 Chr2:73100022 Rr559118 1757 bp proximal
Sp9 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs224458063
MGI SNP Detail
Alliance Variant		 Chr2:73100212 Rr559118 1567 bp proximal
Sp9 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A G G A A G A A A G A A A A A A A A A A A A
rs240870320
MGI SNP Detail
Alliance Variant		 Chr2:73100261 Rr559118 1518 bp proximal
Sp9 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264010524
MGI SNP Detail
Alliance Variant		 Chr2:73100284 Rr559118 1495 bp proximal
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214235562
MGI SNP Detail
Alliance Variant		 Chr2:73100505 Rr559116 within coordinates of
Rr559118 1274 bp proximal
Sp9 Intron
 SNP G/T G T
rs252166798
MGI SNP Detail
Alliance Variant		 Chr2:73100553 Rr559116 within coordinates of
Rr559118 1226 bp proximal
Sp9 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216992478
MGI SNP Detail
Alliance Variant		 Chr2:73100579 Rr559116 within coordinates of
Rr559118 1200 bp proximal
Sp9 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225559358
MGI SNP Detail
Alliance Variant		 Chr2:73100706 Rr559116 within coordinates of
Rr559118 1073 bp proximal
Sp9 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs245519375
MGI SNP Detail
Alliance Variant		 Chr2:73100736 Rr559116 within coordinates of
Rr559118 1043 bp proximal
Sp9 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211778098
MGI SNP Detail
Alliance Variant		 Chr2:73100786 Rr559118 993 bp proximal
Sp9 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230310430
MGI SNP Detail
Alliance Variant		 Chr2:73100992 Cpgi11766 within coordinates of
Rr559118 787 bp proximal
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263596976
MGI SNP Detail
Alliance Variant		 Chr2:73101055 Cpgi11766 within coordinates of
Rr559118 724 bp proximal
Sp9 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C T T C C T C C C T C C C C C C C C C C C C
rs219789031
MGI SNP Detail
Alliance Variant		 Chr2:73101068 Cpgi11766 within coordinates of
Rr559118 711 bp proximal
Sp9 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T G G T T G T T T G T T T T T T T T T T T T
rs240398865
MGI SNP Detail
Alliance Variant		 Chr2:73101147 Cpgi11766 within coordinates of
Rr559118 632 bp proximal
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G
rs259766917
MGI SNP Detail
Alliance Variant		 Chr2:73101260 Cpgi11766 within coordinates of
Rr559118 519 bp proximal
Sp9 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs585622807
MGI SNP Detail
Alliance Variant		 Chr2:73101332 Cpgi11766 within coordinates of
Rr559118 447 bp proximal
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222481164
MGI SNP Detail
Alliance Variant		 Chr2:73101398 Cpgi11766 within coordinates of
Rr559118 381 bp proximal
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs232763484
MGI SNP Detail
Alliance Variant		 Chr2:73101473 Cpgi11766 within coordinates of
Rr559118 306 bp proximal
Sp9 Intron
 SNP A/G A G
rs248338909
MGI SNP Detail
Alliance Variant		 Chr2:73101809 Cpgi11767 within coordinates of
Rr559118 within coordinates of
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A A G G G A A G G A G G G A G G G G G G G G G G G G
rs218777441
MGI SNP Detail
Alliance Variant		 Chr2:73101814 Cpgi11767 within coordinates of
Rr559118 within coordinates of
Sp9 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A
rs240928698
MGI SNP Detail
Alliance Variant		 Chr2:73101896 Cpgi11767 within coordinates of
Rr559118 within coordinates of
Sp9 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T C C T T C T T T C T T T T T T T C T T T T
rs266151047
MGI SNP Detail
Alliance Variant		 Chr2:73101970 Cpgi11767 within coordinates of
Rr559118 within coordinates of
Sp9 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226715614
MGI SNP Detail
Alliance Variant		 Chr2:73101981 Cpgi11767 within coordinates of
Rr559118 within coordinates of
Sp9 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247737674
MGI SNP Detail
Alliance Variant		 Chr2:73102322 Cpgi11767 within coordinates of
Rr559118 43 bp distal
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263529496
MGI SNP Detail
Alliance Variant		 Chr2:73102325 Cpgi11767 within coordinates of
Rr559118 46 bp distal
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs245891875
MGI SNP Detail
Alliance Variant		 Chr2:73102353 Cpgi11767 within coordinates of
Rr559118 74 bp distal
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP A/G A G
rs225627524
MGI SNP Detail
Alliance Variant		 Chr2:73102356 Cpgi11767 within coordinates of
Rr559118 77 bp distal
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580480768
MGI SNP Detail
Alliance Variant		 Chr2:73102393 Cpgi11767 within coordinates of
Rr559118 114 bp distal
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245574785
MGI SNP Detail
Alliance Variant		 Chr2:73102449 Cpgi11767 within coordinates of
Rr559118 170 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255820825
MGI SNP Detail
Alliance Variant		 Chr2:73102717 Rr559118 438 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224735951
MGI SNP Detail
Alliance Variant		 Chr2:73102742 Rr559118 463 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A G G A A G A A A G A A A A A A A G A A A A
rs253639741
MGI SNP Detail
Alliance Variant		 Chr2:73102763 Rr559118 484 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T C C T T T T T C T T T T T T T T T T
rs218663845
MGI SNP Detail
Alliance Variant		 Chr2:73102895 Rr559118 616 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238299139
MGI SNP Detail
Alliance Variant		 Chr2:73102927 Rr559118 648 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258720813
MGI SNP Detail
Alliance Variant		 Chr2:73102976 Cpgi11768 within coordinates of
Rr559118 697 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213961281
MGI SNP Detail
Alliance Variant		 Chr2:73103040 Cpgi11768 within coordinates of
Rr559118 761 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T C C C T T C C T C C C T C C C C C C C C C C C C
rs232382155
MGI SNP Detail
Alliance Variant		 Chr2:73103124 Cpgi11768 within coordinates of
Rr559118 845 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A A G G G A A G G A G G G A G G G G G G G G G G G G
rs248399156
MGI SNP Detail
Alliance Variant		 Chr2:73103205 Cpgi11768 within coordinates of
Rr559118 926 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218836293
MGI SNP Detail
Alliance Variant		 Chr2:73103261 Cpgi11768 within coordinates of
Rr559118 982 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs234520506
MGI SNP Detail
Alliance Variant		 Chr2:73103291 Cpgi11768 within coordinates of
Rr559118 1012 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G
rs260963361
MGI SNP Detail
Alliance Variant		 Chr2:73103450 Cpgi11768 within coordinates of
Rr559118 1171 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T C C T T C T T T C T T T T T T T C T T T T
rs224286027
MGI SNP Detail
Alliance Variant		 Chr2:73103466 Cpgi11768 within coordinates of
Rr559118 1187 bp distal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
Sp9 Splice-Site
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T C C T T C T T T C T T T T T T T C T T T T
rs245261955
MGI SNP Detail
Alliance Variant		 Chr2:73103981 Cpgi11768 within coordinates of
Rr559118 1702 bp distal
Sp9 Coding-Synonymous
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A G G A A G A A A G A A A A A A A G A A A
rs265709576
MGI SNP Detail
Alliance Variant		 Chr2:73104164 Cpgi11768 within coordinates of
Rr559118 1885 bp distal
Sp9 Coding-Synonymous
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs219502499
MGI SNP Detail
Alliance Variant		 Chr2:73104176 Cpgi11768 within coordinates of
Rr559118 1897 bp distal
Sp9 Coding-Synonymous
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239608829
MGI SNP Detail
Alliance Variant		 Chr2:73104233 Cpgi11768 within coordinates of
Rr559118 1954 bp distal
Sp9 Coding-Synonymous
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs255880874
MGI SNP Detail
Alliance Variant		 Chr2:73104263 Cpgi11768 within coordinates of
Rr559118 1984 bp distal
Sp9 Coding-Synonymous
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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