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Mouse SNP Summary
Symbol
Name
ID 		Rr559123
regulatory region 559123
MGI:8021255

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Showing SNP(s) 1 - 38 of 38

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226470078
MGI SNP Detail
Alliance Variant		 Chr2:73107217 Rr406574 within coordinates of
Rr559121 within coordinates of
Rr559123 1773 bp proximal
Sp9 Intron
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs239709757
MGI SNP Detail
Alliance Variant		 Chr2:73107638 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 1352 bp proximal
Sp9 Intron
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP T T T
rs213204391
MGI SNP Detail
Alliance Variant		 Chr2:73107652 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 1338 bp proximal
Sp9 Intron
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs264258298
MGI SNP Detail
Alliance Variant		 Chr2:73107657 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 1333 bp proximal
Sp9 Intron
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP G G G
rs234413114
MGI SNP Detail
Alliance Variant		 Chr2:73107673 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 1317 bp proximal
Sp9 Intron
Sp9 mRNA-UTR
Sp9 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs254923785
MGI SNP Detail
Alliance Variant		 Chr2:73107832 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 1158 bp proximal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs216409539
MGI SNP Detail
Alliance Variant		 Chr2:73108012 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 978 bp proximal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs238810727
MGI SNP Detail
Alliance Variant		 Chr2:73108050 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 940 bp proximal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs586537759
MGI SNP Detail
Alliance Variant		 Chr2:73108109 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 881 bp proximal
Sp9 Intron
Sp9 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251314244
MGI SNP Detail		 Chr2:73108210 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 780 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs214448564
MGI SNP Detail		 Chr2:73108230 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 760 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232854629
MGI SNP Detail		 Chr2:73108282 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 708 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs249594643
MGI SNP Detail		 Chr2:73108327 Cpgi11769 within coordinates of
Rr559121 within coordinates of
Rr559123 663 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221393024
MGI SNP Detail		 Chr2:73108380 Rr559121 within coordinates of
Rr559123 610 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
rs250015459
MGI SNP Detail		 Chr2:73108388 Rr559121 within coordinates of
Rr559123 602 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260764552
MGI SNP Detail		 Chr2:73108470 Rr559121 within coordinates of
Rr559123 520 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223953232
MGI SNP Detail		 Chr2:73108983 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 7 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27950358
MGI SNP Detail		 Chr2:73109084 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 73 bp distal
 SNP A/G G G G G G G A G G A A G G A
rs27950357
MGI SNP Detail		 Chr2:73109098 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 87 bp distal
 SNP A/C A A A A A A C A A C C A A C A
rs27950356
MGI SNP Detail		 Chr2:73109116 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 105 bp distal
 SNP C/T T T T T T T C T T C T T C T
rs235557220
MGI SNP Detail		 Chr2:73109128 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 117 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27950355
MGI SNP Detail		 Chr2:73109243 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 232 bp distal
 SNP C/T T T T T T T T T T T T T T T C
rs233436820
MGI SNP Detail		 Chr2:73109337 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 326 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6245110
MGI SNP Detail		 Chr2:73109403 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 392 bp distal
 SNP G/T G G G G G G G T T G G T T G G T
rs6245651
MGI SNP Detail		 Chr2:73109490 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 479 bp distal
 SNP A/C C C C C C C C A A C C A A C C A C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs6258380
MGI SNP Detail		 Chr2:73109532 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 521 bp distal
 SNP A/G A A A A A A A G G A A G G A A G A
rs245154725
MGI SNP Detail		 Chr2:73109606 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 595 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214528274
MGI SNP Detail		 Chr2:73109618 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 607 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs229952579
MGI SNP Detail		 Chr2:73109619 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 608 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs6258996
MGI SNP Detail		 Chr2:73109704 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 693 bp distal
 SNP A/G G A
rs6259414
MGI SNP Detail		 Chr2:73109733 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 722 bp distal
 SNP C/T C T
rs239451484
MGI SNP Detail		 Chr2:73109740 Cpgi11770 within coordinates of
Rr559122 within coordinates of
Rr559123 729 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264163349
MGI SNP Detail		 Chr2:73109916 Rr559122 within coordinates of
Rr559123 905 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27950354
MGI SNP Detail		 Chr2:73110119 Rr559122 within coordinates of
Rr559123 1108 bp distal
 SNP C/T C C C C C C T C C T T C C T C
rs233409780
MGI SNP Detail		 Chr2:73110672 Rr559123 1661 bp distal
Rr559124 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27950353
MGI SNP Detail		 Chr2:73110724 Rr559123 1713 bp distal
Rr559124 within coordinates of
 SNP A/G A A A A A A G A A G A A G
rs249480838
MGI SNP Detail		 Chr2:73110990 Cpgi11771 within coordinates of
Rr559123 1979 bp distal
Rr559124 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27950352
MGI SNP Detail		 Chr2:73111009 Cpgi11771 within coordinates of
Rr559123 1998 bp distal
Rr559124 within coordinates of
 SNP C/G G G G G G G C G G C C G G C
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Showing SNP(s) 1 - 38 of 38
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory