About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Rr559345
regulatory region 559345
MGI:8021477

<< first < prev1 next > last >>
Showing SNP(s) 1 - 44 of 44

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27967864
MGI SNP Detail
Alliance Variant		 Chr2:74511386 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1914 bp proximal
 SNP A/C C C C C C C C C C C A C C A
rs246838097
MGI SNP Detail
Alliance Variant		 Chr2:74511433 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1867 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27967863
MGI SNP Detail
Alliance Variant		 Chr2:74511453 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1847 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs230543686
MGI SNP Detail
Alliance Variant		 Chr2:74511534 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1766 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256577667
MGI SNP Detail
Alliance Variant		 Chr2:74511552 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1748 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G C G G G C G G G G G G G G G G G G
rs27967862
MGI SNP Detail
Alliance Variant		 Chr2:74511559 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1741 bp proximal
 SNP C/G G G G G G G G G G G C G
rs212343551
MGI SNP Detail
Alliance Variant		 Chr2:74511565 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1735 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G T G G G T G G G G G G G G G G G G
rs230505008
MGI SNP Detail
Alliance Variant		 Chr2:74511623 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1677 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs585447550
MGI SNP Detail
Alliance Variant		 Chr2:74511730 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1570 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs252464522
MGI SNP Detail
Alliance Variant		 Chr2:74511808 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1492 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217055009
MGI SNP Detail
Alliance Variant		 Chr2:74511831 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1469 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs232583354
MGI SNP Detail
Alliance Variant		 Chr2:74511832 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1468 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259406026
MGI SNP Detail
Alliance Variant		 Chr2:74511834 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1466 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222056355
MGI SNP Detail
Alliance Variant		 Chr2:74511871 Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1429 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236997927
MGI SNP Detail
Alliance Variant		 Chr2:74512017 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1283 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260783807
MGI SNP Detail
Alliance Variant		 Chr2:74512116 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1184 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G C G G G C G G G G G G G G G G G G
rs218766146
MGI SNP Detail
Alliance Variant		 Chr2:74512129 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1171 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs238194829
MGI SNP Detail
Alliance Variant		 Chr2:74512153 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1147 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260795373
MGI SNP Detail
Alliance Variant		 Chr2:74512221 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559344 within coordinates of
Rr559345 1079 bp proximal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs247881357
MGI SNP Detail
Alliance Variant		 Chr2:74512246 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559344 within coordinates of
Rr559345 1054 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A G A A A A A A A G A A A A
rs263623008
MGI SNP Detail
Alliance Variant		 Chr2:74512394 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559344 within coordinates of
Rr559345 906 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs230669265
MGI SNP Detail
Alliance Variant		 Chr2:74512510 Cpgi11794 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559344 within coordinates of
Rr559345 790 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251907444
MGI SNP Detail
Alliance Variant		 Chr2:74512910 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 390 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G A G G G G G G G G G G G
rs264713256
MGI SNP Detail
Alliance Variant		 Chr2:74512913 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 387 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs579763046
MGI SNP Detail
Alliance Variant		 Chr2:74513012 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 288 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584024012
MGI SNP Detail
Alliance Variant		 Chr2:74513021 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 279 bp proximal
 SNP C/T T T T T T T T T T T T T C T T C T T C T T T T T T T T C T T T T T C T T
rs587329509
MGI SNP Detail
Alliance Variant		 Chr2:74513060 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 240 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A G A A G A A G A A A A A A A G A A A A A A A G A A A
rs580448287
MGI SNP Detail
Alliance Variant		 Chr2:74513321 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224704918
MGI SNP Detail
Alliance Variant		 Chr2:74513465 Cpgi11794 within coordinates of
Hoxd11 Coding-Synonymous
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs246473867
MGI SNP Detail
Alliance Variant		 Chr2:74513857 Cpgi11794 within coordinates of
Gm28309 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 57 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs217174208
MGI SNP Detail
Alliance Variant		 Chr2:74513866 Cpgi11794 within coordinates of
Gm28309 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 66 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs232682714
MGI SNP Detail
Alliance Variant		 Chr2:74513953 Cpgi11794 within coordinates of
Gm28309 within coordinates of
Hoxd11 Intron
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 153 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257823062
MGI SNP Detail
Alliance Variant		 Chr2:74514488 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 688 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs213406717
MGI SNP Detail
Alliance Variant		 Chr2:74514497 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 697 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238970657
MGI SNP Detail
Alliance Variant		 Chr2:74514698 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 898 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255471964
MGI SNP Detail
Alliance Variant		 Chr2:74514786 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 986 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs218726914
MGI SNP Detail
Alliance Variant		 Chr2:74514870 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1070 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235443120
MGI SNP Detail
Alliance Variant		 Chr2:74515013 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1213 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G A G G G A G G G G G G G A G G G G
rs255181925
MGI SNP Detail
Alliance Variant		 Chr2:74515018 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1218 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs223595604
MGI SNP Detail
Alliance Variant		 Chr2:74515123 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1323 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245566756
MGI SNP Detail
Alliance Variant		 Chr2:74515161 D2Mit271 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1361 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C A C C C A C C C C C C C C C C C C
rs265731480
MGI SNP Detail
Alliance Variant		 Chr2:74515407 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1607 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222653602
MGI SNP Detail
Alliance Variant		 Chr2:74515479 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1679 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs247247819
MGI SNP Detail
Alliance Variant		 Chr2:74515607 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd11 mRNA-UTR
Hoxd11 Noncoding-Transcript-Variant
Igs15 within coordinates of
Rr559345 1807 bp distal
Rr559346 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 44 of 44
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...