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Mouse SNP Summary
Symbol
Name
ID 		Rr559353
regulatory region 559353
MGI:8021485

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Showing SNP(s) 1 - 33 of 33

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257341809
MGI SNP Detail
Alliance Variant		 Chr2:74520664 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559350 within coordinates of
Rr559353 1765 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223466762
MGI SNP Detail
Alliance Variant		 Chr2:74520708 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559350 within coordinates of
Rr559353 1721 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A A A A A A
rs226991932
MGI SNP Detail
Alliance Variant		 Chr2:74520720 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559350 within coordinates of
Rr559353 1709 bp proximal
 SNP A/G A G
rs246756172
MGI SNP Detail
Alliance Variant		 Chr2:74520746 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559350 within coordinates of
Rr559353 1683 bp proximal
 SNP C/T T C
rs256581972
MGI SNP Detail
Alliance Variant		 Chr2:74520930 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559353 1499 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222297059
MGI SNP Detail
Alliance Variant		 Chr2:74520947 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559353 1482 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G A A A G A A A A A A A A A A A A
rs242446166
MGI SNP Detail
Alliance Variant		 Chr2:74521074 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr373365 within coordinates of
Rr559353 1355 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265424774
MGI SNP Detail
Alliance Variant		 Chr2:74521328 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 1101 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs232341960
MGI SNP Detail
Alliance Variant		 Chr2:74521343 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 1086 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs255264986
MGI SNP Detail
Alliance Variant		 Chr2:74521380 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Hoxd10 Splice-Site
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 1049 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262695648
MGI SNP Detail
Alliance Variant		 Chr2:74521445 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 mRNA-UTR
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 984 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223386132
MGI SNP Detail
Alliance Variant		 Chr2:74521594 Cpgi11796 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 mRNA-UTR
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 835 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242450076
MGI SNP Detail
Alliance Variant		 Chr2:74521667 Cpgi11796 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 mRNA-UTR
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 762 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs213057056
MGI SNP Detail
Alliance Variant		 Chr2:74521751 Cpgi11796 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 mRNA-UTR
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 678 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs234568103
MGI SNP Detail
Alliance Variant		 Chr2:74521931 Cpgi11796 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 mRNA-UTR
Igs15 within coordinates of
Rr559351 within coordinates of
Rr559353 498 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A
rs254775911
MGI SNP Detail
Alliance Variant		 Chr2:74522021 Cpgi11796 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 mRNA-UTR
Igs15 within coordinates of
Rr44605 within coordinates of
Rr559351 within coordinates of
Rr559353 408 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs216308107
MGI SNP Detail
Alliance Variant		 Chr2:74522674 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Coding-Synonymous
Igs15 within coordinates of
Rr559353 224 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239023185
MGI SNP Detail
Alliance Variant		 Chr2:74522823 Cpgi11797 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Coding-NonSynonymous
Igs15 within coordinates of
Rr559353 373 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262213926
MGI SNP Detail
Alliance Variant		 Chr2:74523151 Cpgi11797 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 701 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs220515755
MGI SNP Detail
Alliance Variant		 Chr2:74523181 Cpgi11797 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 731 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230141403
MGI SNP Detail
Alliance Variant		 Chr2:74523240 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 790 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G C G G G C G G G G G G G C G G G G
rs250761697
MGI SNP Detail
Alliance Variant		 Chr2:74523473 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1023 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222426642
MGI SNP Detail
Alliance Variant		 Chr2:74523560 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1110 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242596930
MGI SNP Detail
Alliance Variant		 Chr2:74523567 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1117 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263006942
MGI SNP Detail
Alliance Variant		 Chr2:74523623 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1173 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224792953
MGI SNP Detail
Alliance Variant		 Chr2:74523724 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1274 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243049038
MGI SNP Detail
Alliance Variant		 Chr2:74523897 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1447 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs27967861
MGI SNP Detail
Alliance Variant		 Chr2:74524049 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1599 bp distal
 SNP C/G C C G G
rs223514619
MGI SNP Detail
Alliance Variant		 Chr2:74524124 D2Mit37 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1674 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs242939685
MGI SNP Detail
Alliance Variant		 Chr2:74524251 D2Mit37 within coordinates of
Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1801 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs258914079
MGI SNP Detail
Alliance Variant		 Chr2:74524292 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1842 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228649431
MGI SNP Detail
Alliance Variant		 Chr2:74524307 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr559353 1857 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583375803
MGI SNP Detail
Alliance Variant		 Chr2:74524416 Gm28309 within coordinates of
Gm74919 within coordinates of
Hoxd10 Intron
Igs15 within coordinates of
Rr44606 within coordinates of
Rr559353 1966 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 33 of 33
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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