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Mouse SNP Summary
Symbol
Name
ID 		Rr559360
regulatory region 559360
MGI:8021492

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Showing SNP(s) 1 - 43 of 43

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263520225
MGI SNP Detail
Alliance Variant		 Chr2:74529654 Cpgi11799 within coordinates of
Hoxd9 Coding-Synonymous
Igs15 within coordinates of
Rr559360 1542 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs233311375
MGI SNP Detail
Alliance Variant		 Chr2:74529989 Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 1207 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs243392944
MGI SNP Detail
Alliance Variant		 Chr2:74529998 Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 1198 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258364134
MGI SNP Detail
Alliance Variant		 Chr2:74530070 D2Tfv11 within coordinates of
Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 1126 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs224288953
MGI SNP Detail
Alliance Variant		 Chr2:74530187 D2Tfv11 within coordinates of
Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 1009 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G T G G G T G G G G G G G T G G G G
rs244592476
MGI SNP Detail
Alliance Variant		 Chr2:74530215 Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 981 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs51664529
MGI SNP Detail
Alliance Variant		 Chr2:74530301 Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 895 bp proximal
 SNP C/G G C
rs234257865
MGI SNP Detail
Alliance Variant		 Chr2:74530337 Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 859 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257600297
MGI SNP Detail
Alliance Variant		 Chr2:74530473 Hoxd9 mRNA-UTR
Igs15 within coordinates of
Rr559360 723 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217168053
MGI SNP Detail		 Chr2:74530627 Igs15 within coordinates of
Rr559360 569 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237733434
MGI SNP Detail		 Chr2:74530692 Igs15 within coordinates of
Rr559360 504 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244369609
MGI SNP Detail		 Chr2:74530739 Igs15 within coordinates of
Rr559359 within coordinates of
Rr559360 457 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211716117
MGI SNP Detail		 Chr2:74530817 Igs15 within coordinates of
Rr559359 within coordinates of
Rr559360 379 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230437537
MGI SNP Detail		 Chr2:74530833 Igs15 within coordinates of
Rr559359 within coordinates of
Rr559360 363 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs252405230
MGI SNP Detail		 Chr2:74530954 Igs15 within coordinates of
Rr559359 within coordinates of
Rr559360 242 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227093028
MGI SNP Detail		 Chr2:74531184 Igs15 within coordinates of
Rr559359 within coordinates of
Rr559360 12 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237903137
MGI SNP Detail		 Chr2:74531590 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs263269653
MGI SNP Detail		 Chr2:74531714 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs222456720
MGI SNP Detail		 Chr2:74531772 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239024933
MGI SNP Detail		 Chr2:74531784 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258522244
MGI SNP Detail		 Chr2:74531928 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 125 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs218188817
MGI SNP Detail		 Chr2:74532171 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 368 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G
rs238121901
MGI SNP Detail		 Chr2:74532238 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 435 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs264084400
MGI SNP Detail		 Chr2:74532386 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 583 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235722133
MGI SNP Detail		 Chr2:74532400 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 597 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252712407
MGI SNP Detail		 Chr2:74532430 Gm75671 within coordinates of
Igs15 within coordinates of
Rr44607 within coordinates of
Rr559360 627 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265774413
MGI SNP Detail		 Chr2:74532507 Gm75671 within coordinates of
Igs15 within coordinates of
Rr44607 within coordinates of
Rr559360 704 bp distal
Rr559361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230372489
MGI SNP Detail		 Chr2:74532551 Gm75671 within coordinates of
Igs15 within coordinates of
Rr44607 within coordinates of
Rr559360 748 bp distal
Rr559361 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244335190
MGI SNP Detail		 Chr2:74532854 Gm75671 within coordinates of
Igs15 within coordinates of
Rr44607 within coordinates of
Rr559360 1051 bp distal
Rr559361 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs211827154
MGI SNP Detail		 Chr2:74533037 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1234 bp distal
Rr559361 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230538500
MGI SNP Detail		 Chr2:74533178 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1375 bp distal
Rr559361 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs246402319
MGI SNP Detail		 Chr2:74533262 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1459 bp distal
Rr559361 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218776276
MGI SNP Detail		 Chr2:74533291 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1488 bp distal
Rr559361 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239887049
MGI SNP Detail		 Chr2:74533293 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1490 bp distal
Rr559361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs259443498
MGI SNP Detail		 Chr2:74533331 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1528 bp distal
Rr559361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221920355
MGI SNP Detail		 Chr2:74533351 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1548 bp distal
Rr559361 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232653950
MGI SNP Detail		 Chr2:74533553 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1750 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249516994
MGI SNP Detail		 Chr2:74533636 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1833 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs218312278
MGI SNP Detail		 Chr2:74533665 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1862 bp distal
Rr559363 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238281177
MGI SNP Detail		 Chr2:74533687 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1884 bp distal
Rr559363 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265933820
MGI SNP Detail		 Chr2:74533701 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1898 bp distal
Rr559363 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226792689
MGI SNP Detail		 Chr2:74533761 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559360 1958 bp distal
Rr559363 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248359719
MGI SNP Detail		 Chr2:74533792 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559360 1989 bp distal
Rr559363 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 43 of 43
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory