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Mouse SNP Summary
Symbol
Name
ID 		Rr559367
regulatory region 559367
MGI:8021499

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230538500
MGI SNP Detail		 Chr2:74533178 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559361 within coordinates of
Rr559367 1913 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs246402319
MGI SNP Detail		 Chr2:74533262 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559361 within coordinates of
Rr559367 1829 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218776276
MGI SNP Detail		 Chr2:74533291 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559361 within coordinates of
Rr559367 1800 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239887049
MGI SNP Detail		 Chr2:74533293 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559361 within coordinates of
Rr559367 1798 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs259443498
MGI SNP Detail		 Chr2:74533331 Gm75671 within coordinates of
Igs15 within coordinates of
Rr559361 within coordinates of
Rr559367 1760 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221920355
MGI SNP Detail		 Chr2:74533351 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559361 within coordinates of
Rr559367 1740 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232653950
MGI SNP Detail		 Chr2:74533553 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559367 1538 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249516994
MGI SNP Detail		 Chr2:74533636 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559367 1455 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs218312278
MGI SNP Detail		 Chr2:74533665 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1426 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238281177
MGI SNP Detail		 Chr2:74533687 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1404 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265933820
MGI SNP Detail		 Chr2:74533701 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1390 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226792689
MGI SNP Detail		 Chr2:74533761 Gm38462 within coordinates of
Gm75671 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1330 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248359719
MGI SNP Detail		 Chr2:74533792 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1299 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263828675
MGI SNP Detail		 Chr2:74533877 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1214 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225741178
MGI SNP Detail		 Chr2:74533884 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1207 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs238637512
MGI SNP Detail		 Chr2:74533929 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1162 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254194361
MGI SNP Detail		 Chr2:74534026 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1065 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs224079279
MGI SNP Detail		 Chr2:74534056 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1035 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs33347228
MGI SNP Detail		 Chr2:74534060 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 1031 bp proximal
 SNP A/G A A G G
rs6320078
MGI SNP Detail		 Chr2:74534254 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 837 bp proximal
 SNP C/T C T
rs6320565
MGI SNP Detail		 Chr2:74534308 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 783 bp proximal
 SNP C/G C G
rs258178119
MGI SNP Detail		 Chr2:74534503 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Igs15 within coordinates of
Rr559363 within coordinates of
Rr559367 588 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213711834
MGI SNP Detail		 Chr2:74534603 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Igs15 within coordinates of
Rr559364 within coordinates of
Rr559367 488 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232839085
MGI SNP Detail		 Chr2:74534638 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Igs15 within coordinates of
Rr559364 within coordinates of
Rr559367 453 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249477291
MGI SNP Detail		 Chr2:74534838 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Igs15 within coordinates of
Rr559364 within coordinates of
Rr559367 253 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212754512
MGI SNP Detail		 Chr2:74534927 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Igs15 within coordinates of
Rr559364 within coordinates of
Rr559367 164 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584384955
MGI SNP Detail		 Chr2:74534943 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Igs15 within coordinates of
Rr559364 within coordinates of
Rr559367 148 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs13476578
MGI SNP Detail
Alliance Variant		 Chr2:74534998 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559365 within coordinates of
Rr559367 93 bp proximal
 SNP C/T T T T T T T T C C C C T C T C C T C T C C T T C T C T C T C C T T C T C T C T C C C C C T C C C
rs29906617
MGI SNP Detail
Alliance Variant		 Chr2:74535046 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559365 within coordinates of
Rr559367 45 bp proximal
 SNP A/T T T T A T T T
rs579206982
MGI SNP Detail
Alliance Variant		 Chr2:74535216 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Igs15 within coordinates of
Rr559367 within coordinates of
Tssr18423 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227211345
MGI SNP Detail
Alliance Variant		 Chr2:74535259 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245323834
MGI SNP Detail
Alliance Variant		 Chr2:74535319 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263415329
MGI SNP Detail
Alliance Variant		 Chr2:74535492 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 within coordinates of
Tssr18427 within coordinates of
 SNP C/T C C T C C C C T T T T T C C C T C C T C C C T C C T C C T C C C C T C T T C C C
rs219693091
MGI SNP Detail
Alliance Variant		 Chr2:74535496 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 within coordinates of
Tssr18427 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs238801171
MGI SNP Detail
Alliance Variant		 Chr2:74535503 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G C G G C G G G G C G G G C G G G G G C G G G G G G G C G G G
rs581669002
MGI SNP Detail
Alliance Variant		 Chr2:74535651 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 145 bp distal
 SNP A/G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G
rs584533671
MGI SNP Detail
Alliance Variant		 Chr2:74535710 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 204 bp distal
Tssr18429 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A
rs579106732
MGI SNP Detail
Alliance Variant		 Chr2:74535890 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Intron
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 384 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C
rs254108703
MGI SNP Detail
Alliance Variant		 Chr2:74536014 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Coding-Synonymous
Hoxd8 Intron
Igs15 within coordinates of
Rr559367 508 bp distal
 SNP C/T T T T T T T T T T T T T T T T C T T C T T T T T T T C T T T T T T T C T T T
rs585918830
MGI SNP Detail
Alliance Variant		 Chr2:74536039 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Coding-NonSynonymous
Hoxd8 Intron
Igs15 within coordinates of
Rr559367 533 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs578704767
MGI SNP Detail
Alliance Variant		 Chr2:74536074 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Coding-Synonymous
Hoxd8 Intron
Igs15 within coordinates of
Rr559367 568 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs224704498
MGI SNP Detail
Alliance Variant		 Chr2:74536145 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Coding-NonSynonymous
Hoxd8 Intron
Igs15 within coordinates of
Rr559367 639 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249830457
MGI SNP Detail
Alliance Variant		 Chr2:74536446 Cpgi11800 within coordinates of
Gm38462 within coordinates of
Hoxd8 Coding-Synonymous
Igs15 within coordinates of
Rr559367 940 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264320857
MGI SNP Detail
Alliance Variant		 Chr2:74536659 Gm38462 within coordinates of
Hoxd8 Intron
Igs15 within coordinates of
Rr559367 1153 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231900930
MGI SNP Detail
Alliance Variant		 Chr2:74537077 Gm38462 within coordinates of
Hoxd8 Coding-NonSynonymous
Igs15 within coordinates of
Rr559367 1571 bp distal
Rr559368 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252784021
MGI SNP Detail
Alliance Variant		 Chr2:74537263 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 1757 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213381895
MGI SNP Detail
Alliance Variant		 Chr2:74537389 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 1883 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G T G G G T G G G G G G G G G G G G
rs226496485
MGI SNP Detail
Alliance Variant		 Chr2:74537415 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 1909 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G A G G G A G G G G G G G A G G G G
rs243505054
MGI SNP Detail
Alliance Variant		 Chr2:74537444 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559367 1938 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory