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Mouse SNP Summary
Symbol
Name
ID 		Rr559371
regulatory region 559371
MGI:8021503

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264167103
MGI SNP Detail
Alliance Variant		 Chr2:74537972 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559371 1905 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219439145
MGI SNP Detail
Alliance Variant		 Chr2:74538010 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1867 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240250072
MGI SNP Detail
Alliance Variant		 Chr2:74538028 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1849 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G A G G G G
rs259528503
MGI SNP Detail
Alliance Variant		 Chr2:74538081 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1796 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs219446925
MGI SNP Detail
Alliance Variant		 Chr2:74538089 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1788 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238712219
MGI SNP Detail
Alliance Variant		 Chr2:74538114 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1763 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248546154
MGI SNP Detail
Alliance Variant		 Chr2:74538137 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1740 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs218880190
MGI SNP Detail
Alliance Variant		 Chr2:74538139 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1738 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs247782104
MGI SNP Detail
Alliance Variant		 Chr2:74538203 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1674 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G T G G G T G G G G G G G T G G G G
rs266222926
MGI SNP Detail
Alliance Variant		 Chr2:74538213 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1664 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235156095
MGI SNP Detail
Alliance Variant		 Chr2:74538218 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1659 bp proximal
 SNP A/C C A
rs223984059
MGI SNP Detail
Alliance Variant		 Chr2:74538253 Gm38462 within coordinates of
Hoxd8 mRNA-UTR
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1624 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T G T T T G T T T T T T T T T T T T
rs585540943
MGI SNP Detail		 Chr2:74538338 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1539 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248678738
MGI SNP Detail		 Chr2:74538388 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1489 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G A A A G A A A A A A G A A A A
rs257185805
MGI SNP Detail		 Chr2:74538411 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1466 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580315836
MGI SNP Detail		 Chr2:74538440 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559369 within coordinates of
Rr559371 1437 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs585672236
MGI SNP Detail		 Chr2:74538453 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1424 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580272586
MGI SNP Detail		 Chr2:74538479 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1398 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs583781789
MGI SNP Detail		 Chr2:74538483 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1394 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G A G G G A G G G G G G A G G G G
rs586954054
MGI SNP Detail		 Chr2:74538484 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1393 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs226278428
MGI SNP Detail		 Chr2:74538515 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1362 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G A A A G A A A A A A G A A A A
rs243471426
MGI SNP Detail		 Chr2:74538564 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1313 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256744475
MGI SNP Detail		 Chr2:74538656 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 1221 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234084164
MGI SNP Detail		 Chr2:74538894 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 983 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A C A A A C A A A A A A A A A A A A
rs254592178
MGI SNP Detail		 Chr2:74539107 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559370 within coordinates of
Rr559371 770 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216071577
MGI SNP Detail		 Chr2:74539193 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559370 within coordinates of
Rr559371 684 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs238015532
MGI SNP Detail		 Chr2:74539226 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559370 within coordinates of
Rr559371 651 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs246141351
MGI SNP Detail		 Chr2:74539253 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559370 within coordinates of
Rr559371 624 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs213689495
MGI SNP Detail		 Chr2:74539314 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559370 within coordinates of
Rr559371 563 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs232211490
MGI SNP Detail		 Chr2:74539508 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 369 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G A G G G G
rs248262234
MGI SNP Detail		 Chr2:74539546 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 331 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs218983073
MGI SNP Detail		 Chr2:74539557 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 320 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A T A A A T A A A A A A A A A A A A
rs242600610
MGI SNP Detail		 Chr2:74539698 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 179 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs261854758
MGI SNP Detail		 Chr2:74539748 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 129 bp proximal
 SNP C/T T C
rs261068832
MGI SNP Detail		 Chr2:74539783 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 94 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs224543848
MGI SNP Detail		 Chr2:74539820 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 57 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G T G G G T G G G G G G G G G G G G
rs246051167
MGI SNP Detail		 Chr2:74539938 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs257340282
MGI SNP Detail		 Chr2:74539947 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220105262
MGI SNP Detail		 Chr2:74539960 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs236849101
MGI SNP Detail		 Chr2:74540020 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs256510854
MGI SNP Detail		 Chr2:74540211 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs233087547
MGI SNP Detail		 Chr2:74540284 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260168611
MGI SNP Detail		 Chr2:74540314 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A C A A A C A A A A A A A A A A A A
rs263090350
MGI SNP Detail		 Chr2:74540335 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs232958133
MGI SNP Detail		 Chr2:74540369 Gm38462 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246107623
MGI SNP Detail		 Chr2:74540396 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213800333
MGI SNP Detail		 Chr2:74540441 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs32919135
MGI SNP Detail		 Chr2:74540465 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G G A G
rs232309575
MGI SNP Detail		 Chr2:74540506 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242384649
MGI SNP Detail		 Chr2:74540515 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G A G G G A G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213397087
MGI SNP Detail		 Chr2:74540537 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G T G G G T G G G G G G G G G G G G
rs239828517
MGI SNP Detail		 Chr2:74540538 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs264440502
MGI SNP Detail		 Chr2:74540600 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 55 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs224431537
MGI SNP Detail		 Chr2:74540635 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 90 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs241418174
MGI SNP Detail		 Chr2:74540642 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 97 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A A A A A A
rs251495253
MGI SNP Detail		 Chr2:74540662 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 117 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C A C C C C C C C C C C A C C C C
rs220065074
MGI SNP Detail		 Chr2:74540688 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 143 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs237011206
MGI SNP Detail		 Chr2:74540811 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 266 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250067162
MGI SNP Detail		 Chr2:74540812 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 267 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs225780708
MGI SNP Detail		 Chr2:74540838 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 293 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs32867179
MGI SNP Detail		 Chr2:74540845 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 300 bp distal
 SNP C/G C C C G C C C
rs265500543
MGI SNP Detail		 Chr2:74540863 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 318 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232379423
MGI SNP Detail		 Chr2:74540952 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 407 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C A C C C A C C C C C C C A C C C C
rs237385605
MGI SNP Detail		 Chr2:74541065 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 520 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs226245488
MGI SNP Detail		 Chr2:74541308 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 763 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242485378
MGI SNP Detail		 Chr2:74541451 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 906 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212878826
MGI SNP Detail		 Chr2:74541590 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1045 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G A G G G A G G G G G G G G G G G G
rs234185109
MGI SNP Detail		 Chr2:74541595 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1050 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs254809840
MGI SNP Detail		 Chr2:74541655 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1110 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216615379
MGI SNP Detail		 Chr2:74541707 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1162 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232862344
MGI SNP Detail		 Chr2:74541754 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1209 bp distal
 SNP C/T C T
rs251462453
MGI SNP Detail		 Chr2:74541756 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1211 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586040480
MGI SNP Detail		 Chr2:74541757 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1212 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586719007
MGI SNP Detail		 Chr2:74541760 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1215 bp distal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581456442
MGI SNP Detail		 Chr2:74541892 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1347 bp distal
Rr559372 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585251631
MGI SNP Detail		 Chr2:74542047 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1502 bp distal
Rr559372 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578951886
MGI SNP Detail		 Chr2:74542068 Gm38462 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1523 bp distal
Rr559372 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214673707
MGI SNP Detail
Alliance Variant		 Chr2:74542420 Cpgi11801 within coordinates of
Hoxd3 mRNA-UTR
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1875 bp distal
Rr559374 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T G T T T G T T T T T T T T T T T T
rs229714089
MGI SNP Detail
Alliance Variant		 Chr2:74542421 Cpgi11801 within coordinates of
Hoxd3 mRNA-UTR
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1876 bp distal
Rr559374 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261384518
MGI SNP Detail
Alliance Variant		 Chr2:74542463 Cpgi11801 within coordinates of
Hoxd3 mRNA-UTR
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1918 bp distal
Rr559374 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C G C C G C C C G C C C C C C C G C C C C
rs225393818
MGI SNP Detail
Alliance Variant		 Chr2:74542486 Cpgi11801 within coordinates of
Hoxd3 mRNA-UTR
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559371 1941 bp distal
Rr559374 within coordinates of
Tssr18436 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 81 of 81
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory