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Mouse SNP Summary
Symbol
Name
ID 		Rr559376
regulatory region 559376
MGI:8021508

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265511919
MGI SNP Detail
Alliance Variant		 Chr2:74544530 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1970 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs228146227
MGI SNP Detail
Alliance Variant		 Chr2:74544531 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1969 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245315191
MGI SNP Detail
Alliance Variant		 Chr2:74544602 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1898 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258673995
MGI SNP Detail
Alliance Variant		 Chr2:74544659 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1841 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T C T T T C T T T T T T T C T T T T
rs224593787
MGI SNP Detail
Alliance Variant		 Chr2:74544835 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1665 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254530237
MGI SNP Detail
Alliance Variant		 Chr2:74544884 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1616 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs218491875
MGI SNP Detail
Alliance Variant		 Chr2:74545090 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1410 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242735851
MGI SNP Detail
Alliance Variant		 Chr2:74545126 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1374 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs27967858
MGI SNP Detail
Alliance Variant		 Chr2:74545225 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1275 bp proximal
 SNP A/G A A A A A A A A G A A G A
rs215600078
MGI SNP Detail
Alliance Variant		 Chr2:74545252 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1248 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C G C C C G C C C C C C C G C C C C
rs231119569
MGI SNP Detail
Alliance Variant		 Chr2:74545253 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1247 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs250199263
MGI SNP Detail
Alliance Variant		 Chr2:74545254 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1246 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217942152
MGI SNP Detail
Alliance Variant		 Chr2:74545274 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1226 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27967857
MGI SNP Detail
Alliance Variant		 Chr2:74545309 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1191 bp proximal
 SNP A/G G G G G G G G G G A G G A G
rs263677739
MGI SNP Detail
Alliance Variant		 Chr2:74545407 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1093 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs27967856
MGI SNP Detail
Alliance Variant		 Chr2:74545421 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1079 bp proximal
 SNP C/G C C C C C C C C G C C G C
rs251578756
MGI SNP Detail
Alliance Variant		 Chr2:74545444 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1056 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259308717
MGI SNP Detail
Alliance Variant		 Chr2:74545463 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1037 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs222077643
MGI SNP Detail
Alliance Variant		 Chr2:74545470 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 1030 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs238926321
MGI SNP Detail
Alliance Variant		 Chr2:74545523 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 977 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs33761389
MGI SNP Detail
Alliance Variant		 Chr2:74545524 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 976 bp proximal
 SNP C/T C C C T C C C
rs224564998
MGI SNP Detail
Alliance Variant		 Chr2:74545557 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 943 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250275255
MGI SNP Detail
Alliance Variant		 Chr2:74545569 Cpgi11802 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 931 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs265984797
MGI SNP Detail
Alliance Variant		 Chr2:74545597 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 903 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234148322
MGI SNP Detail
Alliance Variant		 Chr2:74545664 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 836 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257645987
MGI SNP Detail
Alliance Variant		 Chr2:74545682 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 818 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A T A A A T A A A A A A A A A A A A
rs215692107
MGI SNP Detail
Alliance Variant		 Chr2:74545876 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 624 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225094950
MGI SNP Detail
Alliance Variant		 Chr2:74545925 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 575 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244268187
MGI SNP Detail
Alliance Variant		 Chr2:74546177 Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr44608 within coordinates of
Rr559376 323 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211756395
MGI SNP Detail
Alliance Variant		 Chr2:74546214 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 286 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27967855
MGI SNP Detail
Alliance Variant		 Chr2:74546231 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 269 bp proximal
 SNP A/G G G G G G G G G G A G G A G
rs27967854
MGI SNP Detail
Alliance Variant		 Chr2:74546249 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 251 bp proximal
 SNP C/T T T T T T T T T T C T T C T
rs218895470
MGI SNP Detail
Alliance Variant		 Chr2:74546259 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 241 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237734971
MGI SNP Detail
Alliance Variant		 Chr2:74546319 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 181 bp proximal
Tssr533 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T
rs253517379
MGI SNP Detail
Alliance Variant		 Chr2:74546365 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 135 bp proximal
Tssr24626 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T C T T T T
rs222042439
MGI SNP Detail
Alliance Variant		 Chr2:74546471 Cpgi11803 within coordinates of
Hoxd3 Intron
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr559376 29 bp proximal
Tssr24627 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239119203
MGI SNP Detail
Alliance Variant		 Chr2:74546475 Cpgi11803 within coordinates of
Hoxd3 Intron
Igs15 within coordinates of
Rr559376 25 bp proximal
Tssr24627 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252087075
MGI SNP Detail
Alliance Variant		 Chr2:74546481 Cpgi11803 within coordinates of
Hoxd3 Intron
Igs15 within coordinates of
Rr559376 19 bp proximal
Tssr24628 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220512788
MGI SNP Detail
Alliance Variant		 Chr2:74546618 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs245436641
MGI SNP Detail
Alliance Variant		 Chr2:74546664 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs264203034
MGI SNP Detail
Alliance Variant		 Chr2:74546698 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27967853
MGI SNP Detail
Alliance Variant		 Chr2:74546738 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP C/T T T T T T T T T T C T T C T
rs239501612
MGI SNP Detail
Alliance Variant		 Chr2:74546752 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258438705
MGI SNP Detail
Alliance Variant		 Chr2:74546753 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224997443
MGI SNP Detail
Alliance Variant		 Chr2:74546899 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244371053
MGI SNP Detail
Alliance Variant		 Chr2:74546908 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27967852
MGI SNP Detail
Alliance Variant		 Chr2:74546911 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP C/T C C C C C C C C C T C C T C
rs228329213
MGI SNP Detail
Alliance Variant		 Chr2:74546932 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258877017
MGI SNP Detail
Alliance Variant		 Chr2:74546934 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585455675
MGI SNP Detail
Alliance Variant		 Chr2:74546971 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 31 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219123121
MGI SNP Detail
Alliance Variant		 Chr2:74546972 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 32 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs239988400
MGI SNP Detail
Alliance Variant		 Chr2:74547012 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 72 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs253483477
MGI SNP Detail
Alliance Variant		 Chr2:74547013 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 73 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs213539351
MGI SNP Detail
Alliance Variant		 Chr2:74547056 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 116 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231907296
MGI SNP Detail
Alliance Variant		 Chr2:74547108 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 168 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27967851
MGI SNP Detail
Alliance Variant		 Chr2:74547141 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 201 bp distal
 SNP C/G C C C C C C C C C G C C G C
rs220361075
MGI SNP Detail
Alliance Variant		 Chr2:74547265 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 325 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242246789
MGI SNP Detail
Alliance Variant		 Chr2:74547309 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 369 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T G T T T G T T T T T T T T T T T T
rs578553108
MGI SNP Detail
Alliance Variant		 Chr2:74547314 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 374 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227148157
MGI SNP Detail
Alliance Variant		 Chr2:74547318 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 378 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs239611782
MGI SNP Detail
Alliance Variant		 Chr2:74547320 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 380 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258349849
MGI SNP Detail
Alliance Variant		 Chr2:74547322 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 382 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225623989
MGI SNP Detail
Alliance Variant		 Chr2:74547324 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 384 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs238126199
MGI SNP Detail
Alliance Variant		 Chr2:74547330 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 390 bp distal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs261313540
MGI SNP Detail
Alliance Variant		 Chr2:74547421 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 481 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228994079
MGI SNP Detail
Alliance Variant		 Chr2:74547471 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 531 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G A A A G A A A A A A A A A A A A
rs253620228
MGI SNP Detail
Alliance Variant		 Chr2:74547496 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 556 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266061013
MGI SNP Detail
Alliance Variant		 Chr2:74547499 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 559 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231589003
MGI SNP Detail
Alliance Variant		 Chr2:74547517 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 577 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247224051
MGI SNP Detail
Alliance Variant		 Chr2:74547528 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 588 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213508160
MGI SNP Detail
Alliance Variant		 Chr2:74547529 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 589 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232653994
MGI SNP Detail
Alliance Variant		 Chr2:74547587 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 647 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243439952
MGI SNP Detail
Alliance Variant		 Chr2:74547630 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 690 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582626243
MGI SNP Detail
Alliance Variant		 Chr2:74547640 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 700 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212194169
MGI SNP Detail
Alliance Variant		 Chr2:74547642 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 702 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586192427
MGI SNP Detail
Alliance Variant		 Chr2:74547651 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 711 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs237435124
MGI SNP Detail
Alliance Variant		 Chr2:74547743 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 803 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260298137
MGI SNP Detail
Alliance Variant		 Chr2:74547826 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 886 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs227265488
MGI SNP Detail
Alliance Variant		 Chr2:74547906 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 966 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C G C C C G C C C C C C C G C C C C
rs233166469
MGI SNP Detail
Alliance Variant		 Chr2:74547920 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 980 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs252302072
MGI SNP Detail
Alliance Variant		 Chr2:74547923 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 983 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219724137
MGI SNP Detail
Alliance Variant		 Chr2:74547957 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1017 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs238631744
MGI SNP Detail
Alliance Variant		 Chr2:74548099 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1159 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G C G G G C G G G G G G G C G G G G
rs264735916
MGI SNP Detail
Alliance Variant		 Chr2:74548101 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1161 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs221190694
MGI SNP Detail
Alliance Variant		 Chr2:74548104 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1164 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs27967850
MGI SNP Detail
Alliance Variant		 Chr2:74548162 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1222 bp distal
 SNP C/T T T T T T T T T T C T T C T
rs264237416
MGI SNP Detail
Alliance Variant		 Chr2:74548287 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1347 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227062655
MGI SNP Detail
Alliance Variant		 Chr2:74548382 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1442 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs247192916
MGI SNP Detail
Alliance Variant		 Chr2:74548491 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1551 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs257497618
MGI SNP Detail
Alliance Variant		 Chr2:74548568 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1628 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs226582448
MGI SNP Detail
Alliance Variant		 Chr2:74548668 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1728 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580414574
MGI SNP Detail
Alliance Variant		 Chr2:74548724 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1784 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583662416
MGI SNP Detail
Alliance Variant		 Chr2:74548827 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1887 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A G A A A A A G A A A A A A A A A A A A
rs27967849
MGI SNP Detail
Alliance Variant		 Chr2:74548846 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1906 bp distal
 SNP C/T C C C C C C C C C T C C T C
rs213115434
MGI SNP Detail
Alliance Variant		 Chr2:74548899 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1959 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235554079
MGI SNP Detail
Alliance Variant		 Chr2:74548911 Hoxd3 Intron
Igs15 within coordinates of
Rr559376 1971 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 96 of 96
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory