About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Rr560162
regulatory region 560162
MGI:8022294

<< first < prev1 next > last >>
Showing SNP(s) 1 - 61 of 61

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250949012
MGI SNP Detail
Chr2:83472713 Rr560162 1985 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221766116
MGI SNP Detail
Chr2:83472766 Rr560162 1932 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240520718
MGI SNP Detail
Chr2:83472826 Rr560162 1872 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs266091973
MGI SNP Detail
Chr2:83472880 Rr560162 1818 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225639629
MGI SNP Detail
Chr2:83472905 Rr560162 1793 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244940673
MGI SNP Detail
Chr2:83472911 Rr560162 1787 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C
rs262022035
MGI SNP Detail
Chr2:83473085 Rr560162 1613 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223667452
MGI SNP Detail
Chr2:83473104 Rr560162 1594 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A
rs244597947
MGI SNP Detail
Chr2:83473181 Rr560162 1517 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A
rs255515627
MGI SNP Detail
Chr2:83473243 Rr560162 1455 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227863136
MGI SNP Detail
Chr2:83473294 Rr560162 1404 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T
rs252711102
MGI SNP Detail
Chr2:83473326 Rr560162 1372 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs219623903
MGI SNP Detail
Chr2:83473338 Rr560162 1360 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239767652
MGI SNP Detail
Chr2:83473402 Rr560162 1296 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254567571
MGI SNP Detail
Chr2:83473410 Rr560162 1288 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C
rs211820221
MGI SNP Detail
Chr2:83473559 Rr560162 1139 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232530028
MGI SNP Detail
Chr2:83473565 Rr560162 1133 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T A
rs250892019
MGI SNP Detail
Chr2:83473569 Rr560162 1129 bp proximal
SNP A/G G G G G G G G G G G G G G G G G A G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs221488878
MGI SNP Detail
Chr2:83473705 Rr560162 993 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239889093
MGI SNP Detail
Chr2:83473728 Rr560162 970 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260864809
MGI SNP Detail
Chr2:83473857 Rr560162 841 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226200449
MGI SNP Detail
Chr2:83473914 Rr560162 784 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs242028805
MGI SNP Detail
Chr2:83473923 Rr560162 775 bp proximal
SNP A/T A A A A A A A A A A A A A A A A T A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs264614176
MGI SNP Detail
Chr2:83473945 Rr560162 753 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218090391
MGI SNP Detail
Chr2:83473953 Rr560162 745 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238562360
MGI SNP Detail
Chr2:83473999 Rr560162 699 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs255434499
MGI SNP Detail
Chr2:83474085 Rr560162 613 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227633740
MGI SNP Detail
Chr2:83474097 Rr560162 601 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257403456
MGI SNP Detail
Chr2:83474137 Rr560162 561 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs264593633
MGI SNP Detail
Chr2:83474162 Rr560162 536 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234514929
MGI SNP Detail
Chr2:83474166 Rr560162 532 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs33169581
MGI SNP Detail
Chr2:83474287 Rr560162 411 bp proximal
SNP A/G G A G A G
rs212365571
MGI SNP Detail
Chr2:83474289 Rr560160 within coordinates of
Rr560162 409 bp proximal
SNP A/G A A A A A A A A A A A A A A A A G A A A A A G A A A A G A G A A A G A A A A A A G A A A A A A A A A A G A
rs232467301
MGI SNP Detail
Chr2:83474387 Rr560160 within coordinates of
Rr560162 311 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244795051
MGI SNP Detail
Chr2:83474423 Rr560160 within coordinates of
Rr560162 275 bp proximal
SNP G/T G G G G G G G G G G G G G G G G T G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs215733667
MGI SNP Detail
Chr2:83474453 Rr560160 within coordinates of
Rr560162 245 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G
rs237521918
MGI SNP Detail
Chr2:83474474 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 224 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T A T
rs264053088
MGI SNP Detail
Chr2:83474476 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 222 bp proximal
SNP C/T C C C C C C C C C C C C C C C C T C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs225698353
MGI SNP Detail
Chr2:83474483 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 215 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs237277874
MGI SNP Detail
Chr2:83474542 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 156 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248022754
MGI SNP Detail
Chr2:83474560 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 138 bp proximal
SNP G/T G G G G G G G G G G G G G G G G T G G G G G T G G G G T G T G G G T G G G G G G T G G G G G G G G G G T G
rs219961710
MGI SNP Detail
Chr2:83474569 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560161 within coordinates of
Rr560162 129 bp proximal
SNP C/T T T T T T T T T T T T T T T T T C T T T T T C T T T T C T T T T C T T T T T T C T T T T T T T T T T C T
rs237476020
MGI SNP Detail
Chr2:83474593 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 105 bp proximal
SNP A/G G G G G G G G G G G G G G G G G A G G A G G A G G A G A G G G G A A G G G G G A A A G A G G G A G G A A
rs249872257
MGI SNP Detail
Chr2:83474595 Cpgi11854 within coordinates of
Rr560160 within coordinates of
Rr560162 103 bp proximal
SNP A/T T T T T T T T T T T T T T T T T A T T T T T A T T T T A T T T T A T T T T T T A T T T T T T T T T T A T
rs221573160
MGI SNP Detail
Chr2:83474651 Cpgi11854 within coordinates of
Rr397083 within coordinates of
Rr560160 within coordinates of
Rr560162 47 bp proximal
SNP A/T T T T T T T T T T T T T T T T T A T T T T T A T T T T A T A T T T A T T T T T T A T T T T T T T A T T A T
rs245316813
MGI SNP Detail
Chr2:83474659 Cpgi11854 within coordinates of
Rr397083 within coordinates of
Rr560160 within coordinates of
Rr560162 39 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266163375
MGI SNP Detail
Chr2:83474661 Cpgi11854 within coordinates of
Rr397083 within coordinates of
Rr560160 within coordinates of
Rr560162 37 bp proximal
SNP C/T T T T T T T T T T T T T T T T T C T T T T T C T T T T C T C T T T C T T T T T T C T T T T T T T T T T C T
rs233438670
MGI SNP Detail
Alliance Variant
Chr2:83474814 Cpgi11854 within coordinates of
Rr397083 within coordinates of
Rr560162 95 bp distal
Rr560164 within coordinates of
Zc3h15 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C G C
rs245472008
MGI SNP Detail
Alliance Variant
Chr2:83474873 Cpgi11854 within coordinates of
Rr397083 within coordinates of
Rr560162 154 bp distal
Rr560164 within coordinates of
Tssr18642 within coordinates of
Zc3h15 mRNA-UTR
Zc3h15 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256243241
MGI SNP Detail
Alliance Variant
Chr2:83474930 Cpgi11854 within coordinates of
Rr560162 211 bp distal
Rr560164 within coordinates of
Tssr18644 within coordinates of
Zc3h15 mRNA-UTR
Zc3h15 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C G C C C C C G C C C C G C C C C C C C C C C G C C C C C C C C C G C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226813990
MGI SNP Detail
Alliance Variant
Chr2:83475050 Cpgi11854 within coordinates of
Rr560162 331 bp distal
Rr560164 within coordinates of
Zc3h15 Coding-Synonymous
Zc3h15 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G A G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
rs245285586
MGI SNP Detail
Alliance Variant
Chr2:83475150 Cpgi11854 within coordinates of
Rr560162 431 bp distal
Rr560164 within coordinates of
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C C C G C C C C C C C C C C
rs215680439
MGI SNP Detail
Alliance Variant
Chr2:83475253 Cpgi11854 within coordinates of
Rr560162 534 bp distal
Rr560164 within coordinates of
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs52578848
MGI SNP Detail
Alliance Variant
Chr2:83475258 Cpgi11854 within coordinates of
Rr560162 539 bp distal
Rr560164 within coordinates of
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP C/T T T C T
rs254352153
MGI SNP Detail
Alliance Variant
Chr2:83475269 Cpgi11854 within coordinates of
Rr560162 550 bp distal
Rr560164 within coordinates of
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G C G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs217714818
MGI SNP Detail
Alliance Variant
Chr2:83475476 Cpgi11854 within coordinates of
Rr560162 757 bp distal
Rr560164 within coordinates of
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G T G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs235403347
MGI SNP Detail
Alliance Variant
Chr2:83475758 Rr560162 1039 bp distal
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs243907529
MGI SNP Detail
Alliance Variant
Chr2:83475782 Rr560162 1063 bp distal
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP G/T T G
rs52459406
MGI SNP Detail
Alliance Variant
Chr2:83476507 Rr560162 1788 bp distal
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP C/T C C C T
rs52490795
MGI SNP Detail
Alliance Variant
Chr2:83476560 Rr560162 1841 bp distal
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP A A A A A
rs47367222
MGI SNP Detail
Alliance Variant
Chr2:83476660 Rr560162 1941 bp distal
Zc3h15 Intron
Zc3h15 Noncoding-Transcript-Variant
SNP T T T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 61 of 61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

Building initial tooltip...