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Mouse SNP Summary
Symbol
Name
ID 		Rr560527
regulatory region 560527
MGI:8022659

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Showing SNP(s) 1 - 67 of 67

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219814476
MGI SNP Detail
Alliance Variant		 Chr2:90372491 Ptprj Intron
Rr560527 1943 bp proximal
 SNP C/T C C C T T C T T C C C C C C C C C C C C C C C T T C C C C T C T C C T T T T C C C T T T C T T T C C T T T
rs48751108
MGI SNP Detail
Alliance Variant		 Chr2:90372524 Ptprj Intron
Rr560527 1910 bp proximal
 SNP C/G G C G
rs48687666
MGI SNP Detail
Alliance Variant		 Chr2:90372525 Ptprj Intron
Rr560527 1909 bp proximal
 SNP C/G C G C
rs221928085
MGI SNP Detail
Alliance Variant		 Chr2:90372542 Ptprj Intron
Rr560527 1892 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs247562829
MGI SNP Detail
Alliance Variant		 Chr2:90372562 Ptprj Intron
Rr560527 1872 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266186112
MGI SNP Detail
Alliance Variant		 Chr2:90372728 Ptprj Intron
Rr560527 1706 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs227803610
MGI SNP Detail
Alliance Variant		 Chr2:90372828 Ptprj Intron
Rr560527 1606 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27383775
MGI SNP Detail
Alliance Variant		 Chr2:90372870 Ptprj Intron
Rr560527 1564 bp proximal
 SNP C/T C C C C C C C C C C C C C T C
rs254483136
MGI SNP Detail
Alliance Variant		 Chr2:90372917 Ptprj Intron
Rr560527 1517 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29714515
MGI SNP Detail
Alliance Variant		 Chr2:90372970 Ptprj Intron
Rr560527 1464 bp proximal
 SNP C/T C C T C T C T
rs27383774
MGI SNP Detail
Alliance Variant		 Chr2:90372974 Ptprj Intron
Rr560527 1460 bp proximal
 SNP A/C A C A A A A A A A A A
rs244525181
MGI SNP Detail
Alliance Variant		 Chr2:90373007 Ptprj Intron
Rr560527 1427 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29859804
MGI SNP Detail
Alliance Variant		 Chr2:90373013 Ptprj Intron
Rr560526 within coordinates of
Rr560527 1421 bp proximal
 SNP A/G A A G G A G
rs240560745
MGI SNP Detail
Alliance Variant		 Chr2:90373092 Ptprj Intron
Rr397111 within coordinates of
Rr560526 within coordinates of
Rr560527 1342 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253674793
MGI SNP Detail
Alliance Variant		 Chr2:90373167 Ptprj Intron
Rr397111 within coordinates of
Rr560526 within coordinates of
Rr560527 1267 bp proximal
Tssr25105 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C G C C C C C C C C C C G C C C G G C
rs29559763
MGI SNP Detail
Alliance Variant		 Chr2:90373418 Ptprj Intron
Rr560526 within coordinates of
Rr560527 1016 bp proximal
 SNP A/G A G A G A G
rs234377070
MGI SNP Detail
Alliance Variant		 Chr2:90373506 Ptprj Intron
Rr560526 within coordinates of
Rr560527 928 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27383773
MGI SNP Detail
Alliance Variant		 Chr2:90373598 Ptprj Intron
Rr560526 within coordinates of
Rr560527 836 bp proximal
 SNP A/G G G G G G G G A G G G
rs261381279
MGI SNP Detail
Alliance Variant		 Chr2:90373646 Ptprj Intron
Rr560526 within coordinates of
Rr560527 788 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs27383772
MGI SNP Detail
Alliance Variant		 Chr2:90373676 Ptprj Intron
Rr560526 within coordinates of
Rr560527 758 bp proximal
 SNP C/T T T T T T T T T T T T T T T C
rs233240629
MGI SNP Detail
Alliance Variant		 Chr2:90373755 Ptprj Intron
Rr560526 within coordinates of
Rr560527 679 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253211777
MGI SNP Detail
Alliance Variant		 Chr2:90373815 Ptprj Intron
Rr560526 within coordinates of
Rr560527 619 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs222262362
MGI SNP Detail
Alliance Variant		 Chr2:90373864 Ptprj Intron
Rr560526 within coordinates of
Rr560527 570 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs27383771
MGI SNP Detail
Alliance Variant		 Chr2:90373865 Ptprj Intron
Rr560526 within coordinates of
Rr560527 569 bp proximal
 SNP A/G A A A A A A A A A A G A A A
rs264444717
MGI SNP Detail
Alliance Variant		 Chr2:90373870 Ptprj Intron
Rr560526 within coordinates of
Rr560527 564 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C G C C C C C C C C C C G C C C G G C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220223764
MGI SNP Detail
Alliance Variant		 Chr2:90373931 Ptprj Intron
Rr560527 503 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A G A A A A A A A A A A
rs27383770
MGI SNP Detail
Alliance Variant		 Chr2:90374076 Ptprj Intron
Rr560527 358 bp proximal
 SNP A/G G G G G G G G G G G G G G A G
rs255626053
MGI SNP Detail
Alliance Variant		 Chr2:90374210 Ptprj Intron
Rr560527 224 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27383769
MGI SNP Detail
Alliance Variant		 Chr2:90374311 Ptprj Intron
Rr560527 123 bp proximal
 SNP C/T T T T T T T T T T T T T C T
rs244490639
MGI SNP Detail
Alliance Variant		 Chr2:90374359 Ptprj Intron
Rr560527 75 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257189048
MGI SNP Detail
Alliance Variant		 Chr2:90374624 Ptprj Intron
Rr560527 169 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232307591
MGI SNP Detail
Alliance Variant		 Chr2:90374716 Ptprj Intron
Rr560527 261 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259212270
MGI SNP Detail
Alliance Variant		 Chr2:90374739 Ptprj Intron
Rr560527 284 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs218684308
MGI SNP Detail
Alliance Variant		 Chr2:90374789 Ptprj Intron
Rr560527 334 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs235901093
MGI SNP Detail
Alliance Variant		 Chr2:90374925 Ptprj Intron
Rr560527 470 bp distal
 SNP A/G G G G G G G G G G G A A G G G G G G G G A A G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G
rs244046448
MGI SNP Detail
Alliance Variant		 Chr2:90374976 Ptprj Intron
Rr560527 521 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27383768
MGI SNP Detail
Alliance Variant		 Chr2:90374989 Ptprj Intron
Rr560527 534 bp distal
 SNP A/G G G A A A G G G G A G G G A A G G A G
rs233190749
MGI SNP Detail
Alliance Variant		 Chr2:90375004 Ptprj Intron
Rr560527 549 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G A G G G G G A G G G G A G G G G G A G A G A A G
rs253080179
MGI SNP Detail
Alliance Variant		 Chr2:90375044 Ptprj Intron
Rr560527 589 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225536557
MGI SNP Detail
Alliance Variant		 Chr2:90375073 Ptprj Intron
Rr560527 618 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T A T T T T T A T T T T T T T T T T A T T T A A T
rs239837931
MGI SNP Detail
Alliance Variant		 Chr2:90375083 Ptprj Intron
Rr560527 628 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264437338
MGI SNP Detail
Alliance Variant		 Chr2:90375104 Ptprj Intron
Rr560527 649 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29541675
MGI SNP Detail
Alliance Variant		 Chr2:90375142 Ptprj Intron
Rr560527 687 bp distal
 SNP A/G G A G A G A
rs245150277
MGI SNP Detail
Alliance Variant		 Chr2:90375157 Ptprj Intron
Rr560527 702 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C C C C C T C C C T T C
rs578287280
MGI SNP Detail
Alliance Variant		 Chr2:90375205 Ptprj Intron
Rr560527 750 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27383767
MGI SNP Detail
Alliance Variant		 Chr2:90375267 Ptprj Intron
Rr560527 812 bp distal
 SNP A/G G G G G G G G G G G A G G G G
rs249865290
MGI SNP Detail
Alliance Variant		 Chr2:90375341 Ptprj Intron
Rr560527 886 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs220227109
MGI SNP Detail
Alliance Variant		 Chr2:90375361 Ptprj Intron
Rr560527 906 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C T C T T T T T T T T T T C T C T C C T
rs239411699
MGI SNP Detail
Alliance Variant		 Chr2:90375414 Ptprj Intron
Rr560527 959 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T T A T T T T T T T T T T T T
rs257042303
MGI SNP Detail
Alliance Variant		 Chr2:90375486 Ptprj Intron
Rr560527 1031 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C C C C C T C C C T T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232954307
MGI SNP Detail
Alliance Variant		 Chr2:90375532 Ptprj Intron
Rr560527 1077 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T C T T T T T C T T T T C T T T T T C T C T C C T
rs247391604
MGI SNP Detail
Alliance Variant		 Chr2:90375533 Ptprj Intron
Rr560527 1078 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G A A G
rs266140734
MGI SNP Detail
Alliance Variant		 Chr2:90375545 Ptprj Intron
Rr560527 1090 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs227258707
MGI SNP Detail
Alliance Variant		 Chr2:90375626 Ptprj Intron
Rr560527 1171 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G G G G G A G G G A A G
rs29825420
MGI SNP Detail
Alliance Variant		 Chr2:90375645 Ptprj Intron
Rr560527 1190 bp distal
Rr560528 within coordinates of
 SNP A/T T A T A T
rs27383766
MGI SNP Detail
Alliance Variant		 Chr2:90375697 Ptprj Intron
Rr560527 1242 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G A
rs226310884
MGI SNP Detail
Alliance Variant		 Chr2:90375849 Ptprj Intron
Rr560527 1394 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246258880
MGI SNP Detail
Alliance Variant		 Chr2:90375936 Ptprj Intron
Rr560527 1481 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217049105
MGI SNP Detail
Alliance Variant		 Chr2:90375976 Ptprj Intron
Rr560527 1521 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242447310
MGI SNP Detail
Alliance Variant		 Chr2:90376024 Ptprj Intron
Rr560527 1569 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27383765
MGI SNP Detail
Alliance Variant		 Chr2:90376055 Ptprj Intron
Rr560527 1600 bp distal
Rr560528 within coordinates of
 SNP A/G G A A A G G G G A G G G G A G A
rs212777710
MGI SNP Detail
Alliance Variant		 Chr2:90376127 Ptprj Intron
Rr560527 1672 bp distal
Rr560528 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230786945
MGI SNP Detail
Alliance Variant		 Chr2:90376136 Ptprj Intron
Rr560527 1681 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249718160
MGI SNP Detail
Alliance Variant		 Chr2:90376200 Ptprj Intron
Rr560527 1745 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs220102732
MGI SNP Detail
Alliance Variant		 Chr2:90376219 Ptprj Intron
Rr560527 1764 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G A A G
rs581963267
MGI SNP Detail
Alliance Variant		 Chr2:90376320 Ptprj Intron
Rr560527 1865 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T A T T A T A T A T A A A T T A A A T A A A T A A
rs239372947
MGI SNP Detail
Alliance Variant		 Chr2:90376422 Ptprj Intron
Rr560527 1967 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G G G G G A G G G A A G
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Showing SNP(s) 1 - 67 of 67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory