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Mouse SNP Summary
Symbol
Name
ID 		Rr560555
regulatory region 560555
MGI:8022687

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236519347
MGI SNP Detail		 Chr2:90498181 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1984 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262360253
MGI SNP Detail		 Chr2:90498206 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1959 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C T
rs27383579
MGI SNP Detail		 Chr2:90498272 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1893 bp proximal
 SNP G/T T T T T T T T T T G G T T T T T G
rs252246749
MGI SNP Detail		 Chr2:90498274 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1891 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs51132530
MGI SNP Detail		 Chr2:90498436 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1729 bp proximal
 SNP C/T T C C
rs265637240
MGI SNP Detail		 Chr2:90498454 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1711 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs232807824
MGI SNP Detail		 Chr2:90498625 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1540 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248586356
MGI SNP Detail		 Chr2:90498644 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1521 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs211806976
MGI SNP Detail		 Chr2:90498669 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1496 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230993413
MGI SNP Detail		 Chr2:90498812 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1353 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245219781
MGI SNP Detail		 Chr2:90498821 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1344 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs583863711
MGI SNP Detail		 Chr2:90498855 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1310 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215060650
MGI SNP Detail		 Chr2:90498928 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560554 within coordinates of
Rr560555 1237 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240501543
MGI SNP Detail		 Chr2:90499156 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 1009 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs586504990
MGI SNP Detail		 Chr2:90499258 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 907 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259813222
MGI SNP Detail		 Chr2:90499277 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 888 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs226310033
MGI SNP Detail		 Chr2:90499559 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 606 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs235236548
MGI SNP Detail		 Chr2:90499689 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 476 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248334653
MGI SNP Detail		 Chr2:90499717 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 448 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218781108
MGI SNP Detail		 Chr2:90499718 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 447 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263691424
MGI SNP Detail		 Chr2:90499724 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 441 bp proximal
 SNP C/T C T
rs580688585
MGI SNP Detail		 Chr2:90499758 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 407 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs237747994
MGI SNP Detail		 Chr2:90499915 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 250 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261973078
MGI SNP Detail		 Chr2:90499956 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 209 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223226196
MGI SNP Detail		 Chr2:90499993 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 172 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247821387
MGI SNP Detail		 Chr2:90500002 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 163 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs263542162
MGI SNP Detail		 Chr2:90500007 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 158 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs228377624
MGI SNP Detail		 Chr2:90500013 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 152 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs242414060
MGI SNP Detail		 Chr2:90500098 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 67 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255824702
MGI SNP Detail		 Chr2:90500158 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 7 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583278752
MGI SNP Detail		 Chr2:90500239 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 53 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs224799095
MGI SNP Detail		 Chr2:90500251 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 65 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs250479026
MGI SNP Detail		 Chr2:90500269 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 83 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215529592
MGI SNP Detail		 Chr2:90500384 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 198 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231887348
MGI SNP Detail		 Chr2:90500464 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 278 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258747820
MGI SNP Detail		 Chr2:90500533 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 347 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs218509269
MGI SNP Detail		 Chr2:90500545 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 359 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs235276326
MGI SNP Detail		 Chr2:90500611 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 425 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27383578
MGI SNP Detail		 Chr2:90500635 Gm39871 within coordinates of
Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 449 bp distal
 SNP A/G A A A A A A A A A A G A A G A
rs27383577
MGI SNP Detail		 Chr2:90500794 Gm75678 within coordinates of
Gm75681 within coordinates of
Rr560555 608 bp distal
 SNP A/G G G G G G G G G G G A G G A G
rs231600271
MGI SNP Detail		 Chr2:90500968 Gm75681 within coordinates of
Rr560555 782 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27383576
MGI SNP Detail		 Chr2:90500975 Gm75681 within coordinates of
Rr560555 789 bp distal
 SNP C/T C C C C C C C C C C T C C T C
rs223014680
MGI SNP Detail		 Chr2:90501301 Gm75681 within coordinates of
Rr560555 1115 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245014563
MGI SNP Detail		 Chr2:90501334 Gm75681 within coordinates of
Rr560555 1148 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs587000383
MGI SNP Detail		 Chr2:90501349 Gm75681 within coordinates of
Rr560555 1163 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs263336480
MGI SNP Detail		 Chr2:90501351 Gm75681 within coordinates of
Rr560555 1165 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222597431
MGI SNP Detail		 Chr2:90501407 Gm75681 within coordinates of
Rr560555 1221 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242724005
MGI SNP Detail		 Chr2:90501468 Gm75681 within coordinates of
Rr560555 1282 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs255769820
MGI SNP Detail		 Chr2:90501472 Gm75681 within coordinates of
Rr560555 1286 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs224644075
MGI SNP Detail		 Chr2:90501514 Gm75681 within coordinates of
Rr560555 1328 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245739339
MGI SNP Detail		 Chr2:90501578 Gm75681 within coordinates of
Rr560555 1392 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27383575
MGI SNP Detail		 Chr2:90501727 Gm75681 within coordinates of
Rr560555 1541 bp distal
 SNP A/G G G G G G G G G G G A G G A G
rs581194691
MGI SNP Detail		 Chr2:90501748 Gm75681 within coordinates of
Rr560555 1562 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs232451091
MGI SNP Detail		 Chr2:90501773 Gm75681 within coordinates of
Rr560555 1587 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs253388115
MGI SNP Detail		 Chr2:90501808 Gm75681 within coordinates of
Rr560555 1622 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs216911705
MGI SNP Detail		 Chr2:90501829 Gm75681 within coordinates of
Rr560555 1643 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs229604015
MGI SNP Detail		 Chr2:90501838 Gm75681 within coordinates of
Rr560555 1652 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242648809
MGI SNP Detail		 Chr2:90501869 Gm75681 within coordinates of
Rr560555 1683 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs213002126
MGI SNP Detail		 Chr2:90501884 Gm75681 within coordinates of
Rr560555 1698 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs231456052
MGI SNP Detail		 Chr2:90501907 Gm75681 within coordinates of
Rr560555 1721 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584878330
MGI SNP Detail		 Chr2:90502093 Gm75681 within coordinates of
Rr560555 1907 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs262562523
MGI SNP Detail		 Chr2:90502131 Gm75681 within coordinates of
Rr560555 1945 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215881185
MGI SNP Detail		 Chr2:90502153 Gm75681 within coordinates of
Rr560555 1967 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 63 of 63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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