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Mouse SNP Summary
Symbol
Name
ID
Rr560659
regulatory region 560659
MGI:8022791

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228872062
MGI SNP Detail
Alliance Variant
Chr2:90993400 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1898 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238515253
MGI SNP Detail
Alliance Variant
Chr2:90993402 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1896 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258151868
MGI SNP Detail
Alliance Variant
Chr2:90993404 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1894 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227121139
MGI SNP Detail
Alliance Variant
Chr2:90993439 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1859 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247557999
MGI SNP Detail
Alliance Variant
Chr2:90993447 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1851 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27387066
MGI SNP Detail
Alliance Variant
Chr2:90993478 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1820 bp proximal
SNP C/T T T T T T T T T C T T C T
rs583410505
MGI SNP Detail
Alliance Variant
Chr2:90993608 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1690 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234093050
MGI SNP Detail
Alliance Variant
Chr2:90993808 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1490 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs253416625
MGI SNP Detail
Alliance Variant
Chr2:90993831 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1467 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213179328
MGI SNP Detail
Alliance Variant
Chr2:90994011 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1287 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238209200
MGI SNP Detail
Alliance Variant
Chr2:90994037 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1261 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs244619435
MGI SNP Detail
Alliance Variant
Chr2:90994134 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1164 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215402406
MGI SNP Detail
Alliance Variant
Chr2:90994205 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1093 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs233732881
MGI SNP Detail
Alliance Variant
Chr2:90994397 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 901 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs252724996
MGI SNP Detail
Alliance Variant
Chr2:90994419 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 879 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs226064912
MGI SNP Detail
Alliance Variant
Chr2:90994420 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 878 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs240158885
MGI SNP Detail
Alliance Variant
Chr2:90994492 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 806 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs260896697
MGI SNP Detail
Alliance Variant
Chr2:90994593 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 705 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221446132
MGI SNP Detail
Alliance Variant
Chr2:90994737 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 561 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs238564938
MGI SNP Detail
Alliance Variant
Chr2:90994741 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 557 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs258021114
MGI SNP Detail
Alliance Variant
Chr2:90994809 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 489 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs220676202
MGI SNP Detail
Alliance Variant
Chr2:90994820 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 478 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs241084456
MGI SNP Detail
Alliance Variant
Chr2:90994822 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 476 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263891023
MGI SNP Detail
Alliance Variant
Chr2:90994930 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 368 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235594919
MGI SNP Detail
Alliance Variant
Chr2:90995016 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 282 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249344510
MGI SNP Detail
Alliance Variant
Chr2:90995082 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 216 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs264969945
MGI SNP Detail
Alliance Variant
Chr2:90995084 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 214 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225701710
MGI SNP Detail
Alliance Variant
Chr2:90995122 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 176 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244852912
MGI SNP Detail
Alliance Variant
Chr2:90995129 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 169 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215272414
MGI SNP Detail
Alliance Variant
Chr2:90995213 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 85 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs587173861
MGI SNP Detail
Alliance Variant
Chr2:90995248 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 50 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27387065
MGI SNP Detail
Alliance Variant
Chr2:90995337 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP C/T T T T T T T T T C T T C T
rs246877374
MGI SNP Detail
Alliance Variant
Chr2:90995340 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs219432921
MGI SNP Detail
Alliance Variant
Chr2:90995353 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242940214
MGI SNP Detail
Alliance Variant
Chr2:90995396 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255370733
MGI SNP Detail
Alliance Variant
Chr2:90995479 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27387064
MGI SNP Detail
Alliance Variant
Chr2:90995501 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP C/T T T T T T T T T C T T C
rs27387063
MGI SNP Detail
Alliance Variant
Chr2:90995576 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 within coordinates of
SNP C/T T T T T T T T T C T T C T
rs251987973
MGI SNP Detail
Alliance Variant
Chr2:90995769 Madd Coding-Synonymous
Madd Noncoding-Transcript-Variant
Rr560659 73 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220738352
MGI SNP Detail
Alliance Variant
Chr2:90995844 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 148 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs27387062
MGI SNP Detail
Alliance Variant
Chr2:90995878 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 182 bp distal
SNP A/T T T T T T T T T A T T A T
rs265871843
MGI SNP Detail
Alliance Variant
Chr2:90995990 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 294 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226427585
MGI SNP Detail
Alliance Variant
Chr2:90996014 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 318 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244427422
MGI SNP Detail
Alliance Variant
Chr2:90996016 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 320 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262087091
MGI SNP Detail
Alliance Variant
Chr2:90996037 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 341 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225557354
MGI SNP Detail
Alliance Variant
Chr2:90996100 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 404 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs238779911
MGI SNP Detail
Alliance Variant
Chr2:90996262 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 566 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46870663
MGI SNP Detail
Alliance Variant
Chr2:90996410 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 714 bp distal
SNP C/G G C C G C
rs231598143
MGI SNP Detail
Alliance Variant
Chr2:90996534 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 838 bp distal
SNP C/T C T
rs580169003
MGI SNP Detail
Alliance Variant
Chr2:90996554 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 858 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T C T T T T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs587377013
MGI SNP Detail
Alliance Variant
Chr2:90996681 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 985 bp distal
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs227669839
MGI SNP Detail
Alliance Variant
Chr2:90996765 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1069 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253974252
MGI SNP Detail
Alliance Variant
Chr2:90996780 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1084 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219368472
MGI SNP Detail
Alliance Variant
Chr2:90996815 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1119 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227885171
MGI SNP Detail
Alliance Variant
Chr2:90996816 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1120 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs254360541
MGI SNP Detail
Alliance Variant
Chr2:90996817 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1121 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs212750909
MGI SNP Detail
Alliance Variant
Chr2:90996834 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1138 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27387061
MGI SNP Detail
Alliance Variant
Chr2:90997009 Madd Coding-Synonymous
Madd Noncoding-Transcript-Variant
Rr560659 1313 bp distal
SNP A/G G G G G G G G G A G G A G
rs27387060
MGI SNP Detail
Alliance Variant
Chr2:90997071 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1375 bp distal
SNP A/T A A A A A A A A T A A T A
rs215132827
MGI SNP Detail
Alliance Variant
Chr2:90997162 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1466 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234484325
MGI SNP Detail
Alliance Variant
Chr2:90997271 Madd Coding-NonSynonymous
Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1575 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259938803
MGI SNP Detail
Alliance Variant
Chr2:90997447 Madd Coding-Synonymous
Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1751 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs250538435
MGI SNP Detail
Alliance Variant
Chr2:90997577 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1881 bp distal
SNP G/T T G
rs220862795
MGI SNP Detail
Alliance Variant
Chr2:90997584 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1888 bp distal
SNP C/G C G
rs226715760
MGI SNP Detail
Alliance Variant
Chr2:90997645 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1949 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs240917333
MGI SNP Detail
Alliance Variant
Chr2:90997674 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1978 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261339160
MGI SNP Detail
Alliance Variant
Chr2:90997693 Madd Intron
Madd Noncoding-Transcript-Variant
Rr560659 1997 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 67 of 67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory