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Mouse SNP Summary
Symbol
Name
ID 		Rr561932
regulatory region 561932
MGI:8024064

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252712742
MGI SNP Detail
Alliance Variant		 Chr2:103625517 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr561932 1922 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29622093
MGI SNP Detail
Alliance Variant		 Chr2:103625584 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr561932 1855 bp proximal
 SNP A/C C A C A
rs230341868
MGI SNP Detail
Alliance Variant		 Chr2:103625608 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr561932 1831 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A
rs254365553
MGI SNP Detail
Alliance Variant		 Chr2:103625632 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr561932 1807 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212229700
MGI SNP Detail
Alliance Variant		 Chr2:103625656 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561932 1783 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236457642
MGI SNP Detail
Alliance Variant		 Chr2:103625691 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561932 1748 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs248115677
MGI SNP Detail
Alliance Variant		 Chr2:103625726 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561932 1713 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs215870014
MGI SNP Detail
Alliance Variant		 Chr2:103626023 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1416 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233847119
MGI SNP Detail
Alliance Variant		 Chr2:103626109 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1330 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257863327
MGI SNP Detail
Alliance Variant		 Chr2:103626126 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1313 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221896447
MGI SNP Detail
Alliance Variant		 Chr2:103626182 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1257 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs235361100
MGI SNP Detail
Alliance Variant		 Chr2:103626203 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1236 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260701434
MGI SNP Detail
Alliance Variant		 Chr2:103626214 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1225 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222485046
MGI SNP Detail
Alliance Variant		 Chr2:103626274 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Rr373619 within coordinates of
Rr561931 within coordinates of
Rr561932 1165 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs240492676
MGI SNP Detail
Alliance Variant		 Chr2:103626388 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Gm75190 within coordinates of
Rr373619 within coordinates of
Rr561932 1051 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs257711217
MGI SNP Detail
Alliance Variant		 Chr2:103626419 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Gm75190 within coordinates of
Rr373619 within coordinates of
Rr561932 1020 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220477233
MGI SNP Detail
Alliance Variant		 Chr2:103626434 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Gm75190 within coordinates of
Rr373619 within coordinates of
Rr561932 1005 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248327331
MGI SNP Detail
Alliance Variant		 Chr2:103626627 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 812 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262966034
MGI SNP Detail
Alliance Variant		 Chr2:103626722 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 717 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230528081
MGI SNP Detail
Alliance Variant		 Chr2:103626749 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 690 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250214937
MGI SNP Detail
Alliance Variant		 Chr2:103626751 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 688 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs256170130
MGI SNP Detail
Alliance Variant		 Chr2:103626770 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 669 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229414589
MGI SNP Detail
Alliance Variant		 Chr2:103626785 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 654 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248194789
MGI SNP Detail
Alliance Variant		 Chr2:103626809 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 630 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215961634
MGI SNP Detail
Alliance Variant		 Chr2:103626856 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 583 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234018357
MGI SNP Detail
Alliance Variant		 Chr2:103626858 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 581 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C T C C C C
rs256201751
MGI SNP Detail
Alliance Variant		 Chr2:103626896 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 543 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs213778798
MGI SNP Detail
Alliance Variant		 Chr2:103626915 Caprin1 Intron
Caprin1 Noncoding-Transcript-Variant
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 524 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237077943
MGI SNP Detail
Alliance Variant		 Chr2:103627302 Caprin1 Intron
Caprin1 mRNA-UTR
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 137 bp proximal
Tssr25500 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs255412877
MGI SNP Detail
Alliance Variant		 Chr2:103627311 Caprin1 Intron
Caprin1 mRNA-UTR
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 128 bp proximal
Tssr25500 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A
rs33587735
MGI SNP Detail
Alliance Variant		 Chr2:103627336 Caprin1 Intron
Caprin1 mRNA-UTR
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 103 bp proximal
Tssr25501 within coordinates of
 SNP C/G C G
rs583751817
MGI SNP Detail
Alliance Variant		 Chr2:103627434 Caprin1 Intron
Caprin1 mRNA-UTR
Cpgi11985 within coordinates of
Rr373619 within coordinates of
Rr561932 5 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs234056522
MGI SNP Detail
Alliance Variant		 Chr2:103627624 Caprin1 Intron
Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs251756037
MGI SNP Detail
Alliance Variant		 Chr2:103627635 Caprin1 Intron
Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 within coordinates of
 SNP A/G A G G A G G A A A A A A A G G A G G G G G A A G A G G G A A A G A A G A A A A G A G G
rs587251236
MGI SNP Detail
Alliance Variant		 Chr2:103627672 Caprin1 Intron
Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs220421186
MGI SNP Detail
Alliance Variant		 Chr2:103627679 Caprin1 Intron
Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 within coordinates of
 SNP G/T T T T G G T G G T T T T T T T T G G T G G G G G T T G T G G G T T T G T T G T T T T G T G G
rs243785138
MGI SNP Detail
Alliance Variant		 Chr2:103627918 Caprin1 mRNA-UTR
Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 213 bp distal
Rr561933 within coordinates of
Tssr586 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs262659374
MGI SNP Detail
Alliance Variant		 Chr2:103627941 Caprin1 mRNA-UTR
Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 236 bp distal
Rr561933 within coordinates of
Tssr25502 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T T T C C C C C C T C C C C C T T C
rs222955846
MGI SNP Detail		 Chr2:103628118 Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 413 bp distal
Rr561934 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245333541
MGI SNP Detail		 Chr2:103628166 Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 461 bp distal
Rr561934 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256251192
MGI SNP Detail		 Chr2:103628265 Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 560 bp distal
Rr561934 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229493848
MGI SNP Detail		 Chr2:103628352 Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 647 bp distal
Rr561934 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242124435
MGI SNP Detail		 Chr2:103628354 Cpgi11985 within coordinates of
Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 649 bp distal
Rr561934 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260108293
MGI SNP Detail		 Chr2:103628546 Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 841 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs232216418
MGI SNP Detail		 Chr2:103628547 Gm75184 within coordinates of
Rr373619 within coordinates of
Rr561932 842 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251611374
MGI SNP Detail		 Chr2:103628635 Gm75184 within coordinates of
Rr561932 930 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs584006609
MGI SNP Detail		 Chr2:103628677 Gm75184 within coordinates of
Rr561932 972 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G G
rs214151350
MGI SNP Detail		 Chr2:103628943 Gm75184 within coordinates of
Rr561932 1238 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs228678837
MGI SNP Detail		 Chr2:103628965 Gm75184 within coordinates of
Rr561932 1260 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242302646
MGI SNP Detail		 Chr2:103629082 Gm75184 within coordinates of
Rr561932 1377 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217199529
MGI SNP Detail		 Chr2:103629112 Gm75184 within coordinates of
Rr561932 1407 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215019187
MGI SNP Detail		 Chr2:103629422 Gm75184 within coordinates of
Rr561932 1717 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A G A G A A A A A G G G G A A A G A A G A A A A G A G G A
rs238670132
MGI SNP Detail		 Chr2:103629511 Gm75184 within coordinates of
Rr561932 1806 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs256802103
MGI SNP Detail		 Chr2:103629614 Gm75184 within coordinates of
Rr561932 1909 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G A A A G G G G G G A G G G G G G A A G
rs586182564
MGI SNP Detail		 Chr2:103629689 Gm75184 within coordinates of
Rr561932 1984 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 55 of 55
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory