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Mouse SNP Summary
Symbol
Name
ID
Rr562642
regulatory region 562642
MGI:8024774

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257275080
MGI SNP Detail
Alliance Variant
Chr2:112115572 Gm21985 Intron
Rr562642 1890 bp proximal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227753374
MGI SNP Detail
Alliance Variant
Chr2:112115618 Gm21985 Intron
Rr562642 1844 bp proximal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243975159
MGI SNP Detail
Alliance Variant
Chr2:112116024 Gm21985 Intron
Rr562642 1438 bp proximal
Slc12a6 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs214313232
MGI SNP Detail
Alliance Variant
Chr2:112116033 Gm21985 Intron
Rr562642 1429 bp proximal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234537049
MGI SNP Detail
Alliance Variant
Chr2:112116174 Gm21985 Intron
Rr562642 1288 bp proximal
Slc12a6 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235978273
MGI SNP Detail
Alliance Variant
Chr2:112116176 Gm21985 Intron
Rr562642 1286 bp proximal
Slc12a6 Intron
SNP C/T T C
rs254222827
MGI SNP Detail
Alliance Variant
Chr2:112116184 Gm21985 Intron
Rr562642 1278 bp proximal
Slc12a6 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27522487
MGI SNP Detail
Alliance Variant
Chr2:112116242 Gm21985 Intron
Rr562642 1220 bp proximal
Slc12a6 Intron
SNP C/T T T T T T C T T T T C T T C T
rs29912880
MGI SNP Detail
Alliance Variant
Chr2:112116439 Gm21985 Intron
Rr562642 1023 bp proximal
Slc12a6 Intron
SNP A/G G G G A
rs252521468
MGI SNP Detail
Alliance Variant
Chr2:112116470 Gm21985 Intron
Rr562642 992 bp proximal
Slc12a6 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs221461389
MGI SNP Detail
Alliance Variant
Chr2:112116664 Gm21985 Intron
Rr562642 798 bp proximal
Slc12a6 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231461231
MGI SNP Detail
Alliance Variant
Chr2:112116693 Gm21985 Intron
Rr562642 769 bp proximal
Slc12a6 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251774434
MGI SNP Detail
Alliance Variant
Chr2:112116738 Gm21985 Intron
Rr562642 724 bp proximal
Slc12a6 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220581488
MGI SNP Detail
Alliance Variant
Chr2:112116769 Gm21985 Intron
Rr562642 693 bp proximal
Slc12a6 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241539723
MGI SNP Detail
Alliance Variant
Chr2:112116814 Gm21985 Intron
Rr562642 648 bp proximal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264921035
MGI SNP Detail
Alliance Variant
Chr2:112116821 Gm21985 Intron
Rr562642 641 bp proximal
Slc12a6 Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226200834
MGI SNP Detail
Alliance Variant
Chr2:112116877 Gm21985 Intron
Rr562642 585 bp proximal
Slc12a6 Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs251826784
MGI SNP Detail
Alliance Variant
Chr2:112116894 Gm21985 Intron
Rr562642 568 bp proximal
Slc12a6 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257346190
MGI SNP Detail
Alliance Variant
Chr2:112116984 Gm21985 Intron
Rr562642 478 bp proximal
Slc12a6 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27522486
MGI SNP Detail
Alliance Variant
Chr2:112117044 Gm21985 Intron
Rr562642 418 bp proximal
Slc12a6 Intron
SNP A/C A A A A A C A A A A C A A C A
rs244031302
MGI SNP Detail
Alliance Variant
Chr2:112117106 Gm21985 Intron
Rr562642 356 bp proximal
Slc12a6 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs256504625
MGI SNP Detail
Alliance Variant
Chr2:112117122 Gm21985 Intron
Rr562642 340 bp proximal
Slc12a6 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27522485
MGI SNP Detail
Alliance Variant
Chr2:112117141 Gm21985 Intron
Rr562642 321 bp proximal
Slc12a6 Intron
SNP A/T T T T T T A T T T T A T T A T
rs249772614
MGI SNP Detail
Alliance Variant
Chr2:112117181 Gm21985 Intron
Rr562642 281 bp proximal
Slc12a6 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217920342
MGI SNP Detail
Alliance Variant
Chr2:112117284 Gm21985 Intron
Rr562642 178 bp proximal
Slc12a6 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240312163
MGI SNP Detail
Alliance Variant
Chr2:112117385 Gm21985 Intron
Rr562642 77 bp proximal
Slc12a6 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs246422122
MGI SNP Detail
Alliance Variant
Chr2:112117436 Gm21985 Intron
Rr562642 26 bp proximal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215636360
MGI SNP Detail
Alliance Variant
Chr2:112117508 Gm21985 Intron
Rr562642 within coordinates of
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231257463
MGI SNP Detail
Alliance Variant
Chr2:112117518 Gm21985 Intron
Rr562642 within coordinates of
Slc12a6 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs251844275
MGI SNP Detail
Alliance Variant
Chr2:112117547 Gm21985 Intron
Rr562642 within coordinates of
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220103768
MGI SNP Detail
Alliance Variant
Chr2:112117618 Gm21985 Intron
Rr562642 within coordinates of
Slc12a6 Intron
SNP C/T T T T T T T T T T T C C T T T T T T T T T C C T T T T C T T T T T C T T T T T C C T T T T T T T C T T T T
rs236920842
MGI SNP Detail
Alliance Variant
Chr2:112117626 Gm21985 Intron
Rr562642 within coordinates of
Slc12a6 Intron
SNP A/T T T T T T T T T T T A A T T T T T T T T T A A T T T T A T T T T T A T T T T T A A T T T T T T T A T T T T
rs27522484
MGI SNP Detail
Alliance Variant
Chr2:112117758 Gm21985 Intron
Rr562642 within coordinates of
Slc12a6 Intron
SNP C/T C C C C C T C C C C T C C T C
rs226492210
MGI SNP Detail
Alliance Variant
Chr2:112117991 Gm21985 Intron
Rr562642 187 bp distal
Slc12a6 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs241943044
MGI SNP Detail
Alliance Variant
Chr2:112118206 Gm21985 Intron
Rr562642 402 bp distal
Slc12a6 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs251557422
MGI SNP Detail
Alliance Variant
Chr2:112118235 Gm21985 Intron
Rr562642 431 bp distal
Slc12a6 Intron
SNP C/T C C C C C C C C C C T T C C C C C C C C C T C C C C C T C C C C C T C C C C C T T C C C C C C C C C C C C
rs29965934
MGI SNP Detail
Alliance Variant
Chr2:112118236 Gm21985 Intron
Rr562642 432 bp distal
Slc12a6 Intron
SNP C/G G G C G C G
rs237656849
MGI SNP Detail
Alliance Variant
Chr2:112118271 Gm21985 Intron
Rr562642 467 bp distal
Slc12a6 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs256345916
MGI SNP Detail
Alliance Variant
Chr2:112118274 Gm21985 Intron
Rr562642 470 bp distal
Slc12a6 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227906410
MGI SNP Detail
Alliance Variant
Chr2:112118321 Gm21985 Intron
Rr562642 517 bp distal
Slc12a6 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245199921
MGI SNP Detail
Alliance Variant
Chr2:112118370 Gm21985 Intron
Rr562642 566 bp distal
Slc12a6 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27522483
MGI SNP Detail
Alliance Variant
Chr2:112118458 Gm21985 Intron
Rr562642 654 bp distal
Slc12a6 Intron
SNP A/C C C C C A C C C C A C C A C
rs234827455
MGI SNP Detail
Alliance Variant
Chr2:112118486 Gm21985 Intron
Rr562642 682 bp distal
Slc12a6 Intron
SNP A/G G G G G G G G G G G A G G G G G G G G G A A G G G G A G G G G G A G G G G G A G G G G G G G A G G G G
rs246494333
MGI SNP Detail
Alliance Variant
Chr2:112118667 Gm21985 Intron
Rr562642 863 bp distal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215880493
MGI SNP Detail
Alliance Variant
Chr2:112118765 Gm21985 Intron
Rr562642 961 bp distal
Slc12a6 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225691690
MGI SNP Detail
Alliance Variant
Chr2:112118810 Gm21985 Intron
Rr562642 1006 bp distal
Slc12a6 Intron
SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs245448508
MGI SNP Detail
Alliance Variant
Chr2:112118936 Gm21985 Intron
Rr562642 1132 bp distal
Slc12a6 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211717164
MGI SNP Detail
Alliance Variant
Chr2:112118965 Gm21985 Intron
Rr562642 1161 bp distal
Slc12a6 Intron
SNP C/T C C C C C C C C C C T C C C C C C C C C T C C C C C T C C C C C C C C C C C T C C C C C C C C C C C C C
rs235295621
MGI SNP Detail
Alliance Variant
Chr2:112119016 Gm21985 Intron
Rr562642 1212 bp distal
Slc12a6 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27522482
MGI SNP Detail
Alliance Variant
Chr2:112119167 Gm21985 Intron
Rr562642 1363 bp distal
Slc12a6 Intron
SNP A/G G G G G A G G G A G G A G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218491827
MGI SNP Detail
Alliance Variant
Chr2:112119221 Gm21985 Intron
Rr562642 1417 bp distal
Slc12a6 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs235426535
MGI SNP Detail
Alliance Variant
Chr2:112119348 Gm21985 Intron
Rr562642 1544 bp distal
Slc12a6 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs251436143
MGI SNP Detail
Alliance Variant
Chr2:112119392 Gm21985 Intron
Rr562642 1588 bp distal
Slc12a6 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27522481
MGI SNP Detail
Alliance Variant
Chr2:112119398 Gm21985 Intron
Rr562642 1594 bp distal
Slc12a6 Intron
SNP C/T T T T T C T T T T C T T T
rs237919837
MGI SNP Detail
Alliance Variant
Chr2:112119533 Gm21985 Intron
Rr562642 1729 bp distal
Slc12a6 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33382080
MGI SNP Detail
Alliance Variant
Chr2:112119632 Gm21985 Intron
Rr562642 1828 bp distal
Slc12a6 Intron
SNP A/G G A G
rs220177022
MGI SNP Detail
Alliance Variant
Chr2:112119797 Gm21985 Intron
Rr562642 1993 bp distal
Rr562643 within coordinates of
Slc12a6 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
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Showing SNP(s) 1 - 57 of 57

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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory