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Mouse SNP Summary
Symbol
Name
ID
Rr562945
regulatory region 562945
MGI:8025077

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27442600
MGI SNP Detail
Alliance Variant
Chr2:115566537 Cdin1 Intron
Rr562945 1967 bp proximal
SNP A/G G G G G G G G G G G A G A G
rs255795160
MGI SNP Detail
Alliance Variant
Chr2:115566542 Cdin1 Intron
Rr562945 1962 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223566844
MGI SNP Detail
Alliance Variant
Chr2:115566572 Cdin1 Intron
Rr562945 1932 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580103997
MGI SNP Detail
Alliance Variant
Chr2:115566601 Cdin1 Intron
Rr562945 1903 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs583807909
MGI SNP Detail
Alliance Variant
Chr2:115566610 Cdin1 Intron
Rr562945 1894 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237981794
MGI SNP Detail
Alliance Variant
Chr2:115566703 Cdin1 Intron
Rr562945 1801 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27442599
MGI SNP Detail
Alliance Variant
Chr2:115566745 Cdin1 Intron
Rr562945 1759 bp proximal
SNP G/T T T T T T T G T T T T T T T
rs587392888
MGI SNP Detail
Alliance Variant
Chr2:115566765 Cdin1 Intron
Rr562945 1739 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220834863
MGI SNP Detail
Alliance Variant
Chr2:115566947 Cdin1 Intron
Rr562945 1557 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241673140
MGI SNP Detail
Alliance Variant
Chr2:115567058 Cdin1 Intron
Rr562945 1446 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265970911
MGI SNP Detail
Alliance Variant
Chr2:115567076 Cdin1 Intron
Rr562945 1428 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229046961
MGI SNP Detail
Alliance Variant
Chr2:115567097 Cdin1 Intron
Rr562945 1407 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253980586
MGI SNP Detail
Alliance Variant
Chr2:115567108 Cdin1 Intron
Rr562945 1396 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261415631
MGI SNP Detail
Alliance Variant
Chr2:115567286 Cdin1 Intron
Rr562945 1218 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27442598
MGI SNP Detail
Alliance Variant
Chr2:115567370 Cdin1 Intron
Rr562945 1134 bp proximal
SNP C/G G G G G G G G G G G C G C
rs244981492
MGI SNP Detail
Alliance Variant
Chr2:115567489 Cdin1 Intron
Rr562945 1015 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215575044
MGI SNP Detail
Alliance Variant
Chr2:115567490 Cdin1 Intron
Rr562945 1014 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233447352
MGI SNP Detail
Alliance Variant
Chr2:115567491 Cdin1 Intron
Rr562945 1013 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254436147
MGI SNP Detail
Alliance Variant
Chr2:115567528 Cdin1 Intron
Rr562945 976 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217811824
MGI SNP Detail
Alliance Variant
Chr2:115567625 Cdin1 Intron
Rr562945 879 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235286099
MGI SNP Detail
Alliance Variant
Chr2:115567678 Cdin1 Intron
Rr562945 826 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs261091396
MGI SNP Detail
Alliance Variant
Chr2:115567736 Cdin1 Intron
Rr562945 768 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220280666
MGI SNP Detail
Alliance Variant
Chr2:115567770 Cdin1 Intron
Rr562945 734 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G A G A G G G G G G G G G G G G
rs231718550
MGI SNP Detail
Alliance Variant
Chr2:115567806 Cdin1 Intron
Rr562945 698 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252276829
MGI SNP Detail
Alliance Variant
Chr2:115567822 Cdin1 Intron
Rr562945 682 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221130020
MGI SNP Detail
Alliance Variant
Chr2:115567836 Cdin1 Intron
Rr562945 668 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs241613987
MGI SNP Detail
Alliance Variant
Chr2:115567921 Cdin1 Intron
Rr562945 583 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs264075124
MGI SNP Detail
Alliance Variant
Chr2:115567922 Cdin1 Intron
Rr562945 582 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221258377
MGI SNP Detail
Alliance Variant
Chr2:115568048 Cdin1 Intron
Rr562945 456 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241447962
MGI SNP Detail
Alliance Variant
Chr2:115568471 Cdin1 Intron
Rr562945 33 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T C T C T T T T T T T C T T T C
rs264575435
MGI SNP Detail
Alliance Variant
Chr2:115568572 Cdin1 Intron
Rr562945 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27442597
MGI SNP Detail
Alliance Variant
Chr2:115568731 Cdin1 Intron
Rr562945 within coordinates of
SNP C/G C C C C C C G C C C G C G
rs244921575
MGI SNP Detail
Alliance Variant
Chr2:115568936 Cdin1 Intron
Rr562945 113 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259893796
MGI SNP Detail
Alliance Variant
Chr2:115568942 Cdin1 Intron
Rr562945 119 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243242247
MGI SNP Detail
Alliance Variant
Chr2:115569047 Cdin1 Intron
Rr562945 224 bp distal
SNP G/T G T
rs227346130
MGI SNP Detail
Alliance Variant
Chr2:115569069 Cdin1 Intron
Rr562945 246 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259735431
MGI SNP Detail
Alliance Variant
Chr2:115569085 Cdin1 Intron
Rr562945 262 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs217575532
MGI SNP Detail
Alliance Variant
Chr2:115569086 Cdin1 Intron
Rr562945 263 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs228912548
MGI SNP Detail
Alliance Variant
Chr2:115569163 Cdin1 Intron
Rr562945 340 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248968762
MGI SNP Detail
Alliance Variant
Chr2:115569364 Cdin1 Intron
Rr562945 541 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27442596
MGI SNP Detail
Alliance Variant
Chr2:115569365 Cdin1 Intron
Rr562945 542 bp distal
SNP C/G G G G G G G G G G G C G C C
rs231661719
MGI SNP Detail
Alliance Variant
Chr2:115569535 Cdin1 Intron
Rr562945 712 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252222759
MGI SNP Detail
Alliance Variant
Chr2:115569536 Cdin1 Intron
Rr562945 713 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215531987
MGI SNP Detail
Alliance Variant
Chr2:115569561 Cdin1 Intron
Rr562945 738 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240719942
MGI SNP Detail
Alliance Variant
Chr2:115569581 Cdin1 Intron
Rr562945 758 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A G A G A A A A A A A G A A A A
rs263773905
MGI SNP Detail
Alliance Variant
Chr2:115569621 Cdin1 Intron
Rr562945 798 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221659003
MGI SNP Detail
Alliance Variant
Chr2:115569778 Cdin1 Intron
Rr562945 955 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs580333391
MGI SNP Detail
Alliance Variant
Chr2:115569803 Cdin1 Intron
Rr562945 980 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs27442595
MGI SNP Detail
Alliance Variant
Chr2:115569859 Cdin1 Intron
Rr562945 1036 bp distal
SNP G/T T G G G T T G G G T G G
rs258025391
MGI SNP Detail
Alliance Variant
Chr2:115569860 Cdin1 Intron
Rr562945 1037 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T C T C T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219753175
MGI SNP Detail
Alliance Variant
Chr2:115569886 Cdin1 Intron
Rr562945 1063 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238706378
MGI SNP Detail
Alliance Variant
Chr2:115569930 Cdin1 Intron
Rr562945 1107 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218151469
MGI SNP Detail
Alliance Variant
Chr2:115569949 Cdin1 Intron
Rr562945 1126 bp distal
SNP C/T T C
rs235746148
MGI SNP Detail
Alliance Variant
Chr2:115569953 Cdin1 Intron
Rr562945 1130 bp distal
SNP C/T C T
rs259771617
MGI SNP Detail
Alliance Variant
Chr2:115569985 Cdin1 Intron
Rr562945 1162 bp distal
SNP C/T C T
rs259808491
MGI SNP Detail
Alliance Variant
Chr2:115570032 Cdin1 Intron
Rr562945 1209 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227294961
MGI SNP Detail
Alliance Variant
Chr2:115570162 Cdin1 Intron
Rr562945 1339 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248315488
MGI SNP Detail
Alliance Variant
Chr2:115570181 Cdin1 Intron
Rr562945 1358 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265827786
MGI SNP Detail
Alliance Variant
Chr2:115570289 Cdin1 Intron
Rr562945 1466 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs228293334
MGI SNP Detail
Alliance Variant
Chr2:115570353 Cdin1 Intron
Rr562945 1530 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252120020
MGI SNP Detail
Alliance Variant
Chr2:115570389 Cdin1 Intron
Rr562945 1566 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214163684
MGI SNP Detail
Alliance Variant
Chr2:115570397 Cdin1 Intron
Rr562945 1574 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225083077
MGI SNP Detail
Alliance Variant
Chr2:115570524 Cdin1 Intron
Rr562945 1701 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246195838
MGI SNP Detail
Alliance Variant
Chr2:115570539 Cdin1 Intron
Rr562945 1716 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T C T C T T T T T T T C T T T T
rs215472068
MGI SNP Detail
Alliance Variant
Chr2:115570573 Cdin1 Intron
Rr562945 1750 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243445276
MGI SNP Detail
Alliance Variant
Chr2:115570641 Cdin1 Intron
Rr562945 1818 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C T C T C C C C C C C C C C C C
rs260561477
MGI SNP Detail
Alliance Variant
Chr2:115570687 Cdin1 Intron
Rr562945 1864 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584039708
MGI SNP Detail
Alliance Variant
Chr2:115570727 Cdin1 Intron
Rr562945 1904 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213751805
MGI SNP Detail
Alliance Variant
Chr2:115570806 Cdin1 Intron
Rr562945 1983 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 69 of 69

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory