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Mouse SNP Summary
Symbol
Name
ID
Rr563301
regulatory region 563301
MGI:8025433

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Showing SNP(s) 1 - 53 of 53

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs3144598
MGI SNP Detail
Alliance Variant
Chr2:118525281 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1992 bp proximal
SNP A/G A A G G A
rs581588384
MGI SNP Detail
Alliance Variant
Chr2:118525287 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1986 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229302049
MGI SNP Detail
Alliance Variant
Chr2:118525369 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1904 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3144599
MGI SNP Detail
Alliance Variant
Chr2:118525393 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1880 bp proximal
SNP A/T A A T T A
rs264918853
MGI SNP Detail
Alliance Variant
Chr2:118525753 Pak6 Coding-Synonymous
Pak6 Noncoding-Transcript-Variant
Rr563301 1520 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227862589
MGI SNP Detail
Alliance Variant
Chr2:118525841 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1432 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256643703
MGI SNP Detail
Alliance Variant
Chr2:118525842 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1431 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3144600
MGI SNP Detail
Alliance Variant
Chr2:118525899 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1374 bp proximal
SNP A/G G G G A A A A G G
rs3149835
MGI SNP Detail
Alliance Variant
Chr2:118525914 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1359 bp proximal
SNP A/C A A C A
rs245610910
MGI SNP Detail
Alliance Variant
Chr2:118526056 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1217 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217583214
MGI SNP Detail
Alliance Variant
Chr2:118526058 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1215 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs3144601
MGI SNP Detail
Alliance Variant
Chr2:118526060 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 1213 bp proximal
SNP A/C C A C A C
rs255934640
MGI SNP Detail
Alliance Variant
Chr2:118526074 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563301 1199 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs211960467
MGI SNP Detail
Alliance Variant
Chr2:118526222 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563301 1051 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27458113
MGI SNP Detail
Alliance Variant
Chr2:118526244 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563301 1029 bp proximal
SNP A/G G G G A G G G G G G G
rs27458112
MGI SNP Detail
Alliance Variant
Chr2:118526352 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563300 within coordinates of
Rr563301 921 bp proximal
SNP C/T T C C C C C
rs27458111
MGI SNP Detail
Alliance Variant
Chr2:118526360 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563300 within coordinates of
Rr563301 913 bp proximal
SNP C/T C T T C C C C T C T
rs233699556
MGI SNP Detail
Alliance Variant
Chr2:118526395 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563301 878 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3144602
MGI SNP Detail
Alliance Variant
Chr2:118526613 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563299 within coordinates of
Rr563301 660 bp proximal
SNP A/G A A G A G A
rs222642678
MGI SNP Detail
Alliance Variant
Chr2:118526819 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 454 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250298436
MGI SNP Detail
Alliance Variant
Chr2:118526844 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 429 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261972705
MGI SNP Detail
Alliance Variant
Chr2:118526853 Pak6 Intron
Pak6 Noncoding-Transcript-Variant
Rr563301 420 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3144603
MGI SNP Detail
Alliance Variant
Chr2:118526965 Cpgi12087 within coordinates of
Pak6 Coding-Synonymous
Pak6 Noncoding-Transcript-Variant
Rr563301 308 bp proximal
SNP C/T C C T C T C
rs27458110
MGI SNP Detail
Alliance Variant
Chr2:118526983 Cpgi12087 within coordinates of
Pak6 Coding-Synonymous
Pak6 Noncoding-Transcript-Variant
Rr563301 290 bp proximal
SNP A/G G G G A G G G G G G
rs255552928
MGI SNP Detail
Alliance Variant
Chr2:118527232 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 41 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227852645
MGI SNP Detail
Alliance Variant
Chr2:118527258 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 15 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245514925
MGI SNP Detail
Alliance Variant
Chr2:118527356 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 62 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260277362
MGI SNP Detail
Alliance Variant
Chr2:118527372 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 78 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228830357
MGI SNP Detail
Alliance Variant
Chr2:118527421 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 127 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs3144604
MGI SNP Detail
Alliance Variant
Chr2:118527615 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 321 bp distal
SNP A/G G G G G G A A A G A G G
rs211763047
MGI SNP Detail
Alliance Variant
Chr2:118527823 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 529 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238636878
MGI SNP Detail
Alliance Variant
Chr2:118527907 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 613 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580656132
MGI SNP Detail
Alliance Variant
Chr2:118527953 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 659 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs3149836
MGI SNP Detail
Alliance Variant
Chr2:118528003 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 709 bp distal
SNP A/G G G A G
rs3149837
MGI SNP Detail
Alliance Variant
Chr2:118528099 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 805 bp distal
SNP C/T T T C T C C C C C T C C C C C
rs3144606
MGI SNP Detail
Alliance Variant
Chr2:118528115 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 821 bp distal
SNP C/G G G G G G G G C G G C G G C G G
rs255121772
MGI SNP Detail
Alliance Variant
Chr2:118528147 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 853 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222681641
MGI SNP Detail
Alliance Variant
Chr2:118528298 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 1004 bp distal
Rr563302 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235445088
MGI SNP Detail
Alliance Variant
Chr2:118528436 Pak6 mRNA-UTR
Pak6 Noncoding-Transcript-Variant
Rr563301 1142 bp distal
Rr563302 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27458109
MGI SNP Detail
Chr2:118528656 Rr563301 1362 bp distal
Rr563302 within coordinates of
SNP A/G G G G G G G A G G G G G G
rs3149838
MGI SNP Detail
Chr2:118528663 Rr563301 1369 bp distal
Rr563302 within coordinates of
SNP C/T T T T T T T T T T C T T C T T
rs246950028
MGI SNP Detail
Chr2:118528668 Rr563301 1374 bp distal
Rr563302 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27458108
MGI SNP Detail
Chr2:118528699 Rr563301 1405 bp distal
Rr563302 within coordinates of
SNP A/G G G G G G G G G G G G G A G
rs221541464
MGI SNP Detail
Chr2:118528757 Rr563301 1463 bp distal
Rr563302 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239537773
MGI SNP Detail
Chr2:118528779 Rr563301 1485 bp distal
Rr563302 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260166103
MGI SNP Detail
Chr2:118528781 Rr563301 1487 bp distal
Rr563302 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27458107
MGI SNP Detail
Chr2:118528823 Rr563301 1529 bp distal
SNP C/G C C C C C C G C C C C C C
rs250268812
MGI SNP Detail
Chr2:118528842 Rr563301 1548 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264739466
MGI SNP Detail
Chr2:118528883 Rr563301 1589 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230658620
MGI SNP Detail
Chr2:118528991 Rr563301 1697 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244698021
MGI SNP Detail
Chr2:118529025 Rr563301 1731 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs584658949
MGI SNP Detail
Chr2:118529081 Rr563301 1787 bp distal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs387661090
MGI SNP Detail
Chr2:118529087 Rr563301 1793 bp distal
SNP C/G G G G G C G C
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Showing SNP(s) 1 - 53 of 53

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory