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Mouse SNP Summary
Symbol
Name
ID
Rr563326
regulatory region 563326
MGI:8025458

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220406742
MGI SNP Detail
Alliance Variant
Chr2:118591189 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1943 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239184481
MGI SNP Detail
Alliance Variant
Chr2:118591558 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1574 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29858238
MGI SNP Detail
Alliance Variant
Chr2:118591674 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1458 bp proximal
SNP A/G A G A G A G
rs3149606
MGI SNP Detail
Alliance Variant
Chr2:118591703 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1429 bp proximal
SNP A/G A A G A A G G G G G A
rs27458058
MGI SNP Detail
Alliance Variant
Chr2:118591754 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1378 bp proximal
SNP C/T C T T C T C C
rs3149607
MGI SNP Detail
Alliance Variant
Chr2:118591888 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1244 bp proximal
SNP G/T T T T T T G T G G G T G T T
rs223975253
MGI SNP Detail
Alliance Variant
Chr2:118591921 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 1211 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242140688
MGI SNP Detail
Alliance Variant
Chr2:118591977 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563324 within coordinates of
Rr563326 1155 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214187416
MGI SNP Detail
Alliance Variant
Chr2:118592201 Ccdc9b Coding-Synonymous
Ccdc9b Noncoding-Transcript-Variant
Rr563326 931 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231174917
MGI SNP Detail
Alliance Variant
Chr2:118592211 Ccdc9b Coding-NonSynonymous
Ccdc9b Noncoding-Transcript-Variant
Rr563326 921 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47528017
MGI SNP Detail
Alliance Variant
Chr2:118592225 Ccdc9b Coding-Synonymous
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 907 bp proximal
SNP A/G A A A G A
rs215512375
MGI SNP Detail
Alliance Variant
Chr2:118592268 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 864 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3679541
MGI SNP Detail
Alliance Variant
Chr2:118592373 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 759 bp proximal
SNP C/T C C C T C T C
rs3679559
MGI SNP Detail
Alliance Variant
Chr2:118592379 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Rr563326 753 bp proximal
SNP A/C C C C A C A C
rs3679600
MGI SNP Detail
Alliance Variant
Chr2:118592399 Ccdc9b Intron
Ccdc9b Noncoding-Transcript-Variant
Ccdc9b Splice-Site
Rr563326 733 bp proximal
SNP C/T C C C T C T C
rs230728284
MGI SNP Detail
Alliance Variant
Chr2:118592417 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 715 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs3144398
MGI SNP Detail
Alliance Variant
Chr2:118592511 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 621 bp proximal
SNP A/C A A A A A C A C C C C A A
rs3149608
MGI SNP Detail
Alliance Variant
Chr2:118592565 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 567 bp proximal
SNP A/T T T T A T
rs239040125
MGI SNP Detail
Alliance Variant
Chr2:118592694 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 438 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs3144399
MGI SNP Detail
Alliance Variant
Chr2:118592759 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 373 bp proximal
SNP A/G G G G G G A G A A A G G G G
rs3149609
MGI SNP Detail
Alliance Variant
Chr2:118592782 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 350 bp proximal
SNP C/T C C C T T C
rs3149610
MGI SNP Detail
Alliance Variant
Chr2:118592813 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 319 bp proximal
SNP C/G C C C C C G G G G G C C
rs264204391
MGI SNP Detail
Alliance Variant
Chr2:118592907 Ccdc9b Intron
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 225 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224771722
MGI SNP Detail
Alliance Variant
Chr2:118593054 Ccdc9b Coding-NonSynonymous
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 78 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32920032
MGI SNP Detail
Alliance Variant
Chr2:118593106 Ccdc9b Coding-NonSynonymous
Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr367276 within coordinates of
Rr563326 26 bp proximal
Tssr25793 within coordinates of
SNP A/T A A A T A T A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs3149611
MGI SNP Detail
Alliance Variant
Chr2:118593153 Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr367276 within coordinates of
Rr563326 within coordinates of
SNP G/T T T T G G T G T
rs27458057
MGI SNP Detail
Alliance Variant
Chr2:118593230 Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr367276 within coordinates of
Rr563326 within coordinates of
SNP A/G G G G G G G G A
rs252891760
MGI SNP Detail
Alliance Variant
Chr2:118593324 Ccdc9b mRNA-UTR
Ccdc9b Noncoding-Transcript-Variant
Rr563326 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs3149612
MGI SNP Detail
Chr2:118593573 Rr563326 within coordinates of
SNP A/C A A C A C A
rs3149613
MGI SNP Detail
Chr2:118593574 Rr563326 within coordinates of
SNP C/T T T C T C T
rs259034092
MGI SNP Detail
Chr2:118593583 Rr563326 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212850462
MGI SNP Detail
Chr2:118593687 Rr563326 55 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs229854059
MGI SNP Detail
Chr2:118593787 Rr563326 155 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs3149614
MGI SNP Detail
Chr2:118593854 Rr563326 222 bp distal
SNP A/G A A A A A G A G G G A G A A
rs214452188
MGI SNP Detail
Chr2:118593931 Rr563326 299 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584215835
MGI SNP Detail
Chr2:118594023 Rr563326 391 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238335041
MGI SNP Detail
Chr2:118594236 Rr563326 604 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52091349
MGI SNP Detail
Chr2:118594260 Rr563326 628 bp distal
SNP C/T C T T
rs259629568
MGI SNP Detail
Chr2:118594639 Rr563326 1007 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3144400
MGI SNP Detail
Chr2:118594646 Rr563326 1014 bp distal
SNP G/T G G G T G T G
rs3149615
MGI SNP Detail
Chr2:118594678 Rr563326 1046 bp distal
Rr563327 within coordinates of
SNP C/T T T T C T C T
rs3149616
MGI SNP Detail
Chr2:118594728 Rr563326 1096 bp distal
Rr563327 within coordinates of
SNP C/T C C C T C T C
rs33601612
MGI SNP Detail
Chr2:118594741 Rr563326 1109 bp distal
Rr563327 within coordinates of
SNP C/T C C T C T C T
rs236244985
MGI SNP Detail
Chr2:118594762 Rr563326 1130 bp distal
Rr563327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs3149617
MGI SNP Detail
Chr2:118594779 Rr563326 1147 bp distal
Rr563327 within coordinates of
SNP A/T T T A T T A A A A T A T
rs224928276
MGI SNP Detail
Chr2:118594846 Rr563326 1214 bp distal
Rr563327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248721426
MGI SNP Detail
Chr2:118594858 Rr563326 1226 bp distal
Rr563327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263070229
MGI SNP Detail
Chr2:118594908 Rr563326 1276 bp distal
Rr563327 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3144401
MGI SNP Detail
Chr2:118594946 Rr563326 1314 bp distal
Rr563327 within coordinates of
SNP A/G A A G A A G G G G A G A
rs253825312
MGI SNP Detail
Chr2:118594976 Rr563326 1344 bp distal
Rr563327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212710988
MGI SNP Detail
Chr2:118595077 Rr563326 1445 bp distal
Rr563327 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs50107241
MGI SNP Detail
Chr2:118595083 Rr563326 1451 bp distal
Rr563327 within coordinates of
SNP C/G C G G C G
rs245692182
MGI SNP Detail
Chr2:118595084 Rr563326 1452 bp distal
Rr563327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs33471382
MGI SNP Detail
Chr2:118595195 Rr397216 within coordinates of
Rr563326 1563 bp distal
Rr563327 within coordinates of
SNP A/G G A A G A
rs29575986
MGI SNP Detail
Chr2:118595199 Rr397216 within coordinates of
Rr563326 1567 bp distal
Rr563327 within coordinates of
SNP A/G A G G A G
rs263374332
MGI SNP Detail
Chr2:118595305 Rr397216 within coordinates of
Rr563326 1673 bp distal
Rr563327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215934152
MGI SNP Detail
Chr2:118595384 Rr397216 within coordinates of
Rr563326 1752 bp distal
Rr563327 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33038277
MGI SNP Detail
Chr2:118595403 Rr563326 1771 bp distal
Rr563327 within coordinates of
SNP C/T C T T C T
rs252826564
MGI SNP Detail
Chr2:118595438 Rr563326 1806 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs3149619
MGI SNP Detail
Chr2:118595474 Rr563326 1842 bp distal
SNP A/G G G G G G G A A G A G G
rs236305820
MGI SNP Detail
Chr2:118595503 Rr563326 1871 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250838381
MGI SNP Detail
Chr2:118595522 Rr563326 1890 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48884184
MGI SNP Detail
Chr2:118595550 Rr563326 1918 bp distal
SNP G/T G G T G
rs245963437
MGI SNP Detail
Chr2:118595610 Rr563326 1978 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 64 of 64

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory