About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Rr563377
regulatory region 563377
MGI:8025509

<< first < prev1 next > last >>
Showing SNP(s) 1 - 63 of 63

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242901950
MGI SNP Detail
Alliance Variant
Chr2:118742152 Bahd1 Intron
Rr563377 1911 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs260783208
MGI SNP Detail
Alliance Variant
Chr2:118742272 Bahd1 Intron
Rr563377 1791 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33331124
MGI SNP Detail
Alliance Variant
Chr2:118742457 Bahd1 Intron
Rr563377 1606 bp proximal
SNP C/T T T C T C T
rs582689759
MGI SNP Detail
Alliance Variant
Chr2:118742645 Bahd1 Intron
Rr563377 1418 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs3669388
MGI SNP Detail
Alliance Variant
Chr2:118742758 Bahd1 Intron
Rr563377 1305 bp proximal
SNP A/C A A A A A A C A C A C A
rs215281885
MGI SNP Detail
Alliance Variant
Chr2:118742764 Bahd1 Intron
Rr563377 1299 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs230458207
MGI SNP Detail
Alliance Variant
Chr2:118742850 Bahd1 Intron
Rr563377 1213 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258760017
MGI SNP Detail
Alliance Variant
Chr2:118742913 Bahd1 Intron
Rr563377 1150 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215424332
MGI SNP Detail
Alliance Variant
Chr2:118742919 Bahd1 Intron
Rr563377 1144 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235442154
MGI SNP Detail
Alliance Variant
Chr2:118743046 Bahd1 Intron
Rr563377 1017 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252421127
MGI SNP Detail
Alliance Variant
Chr2:118743128 Bahd1 Intron
Rr563377 935 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212663480
MGI SNP Detail
Alliance Variant
Chr2:118743132 Bahd1 Intron
Rr563377 931 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236023056
MGI SNP Detail
Alliance Variant
Chr2:118743163 Bahd1 Intron
Rr563377 900 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs4135859
MGI SNP Detail
Alliance Variant
Chr2:118743203 Bahd1 Intron
Rr563377 860 bp proximal
SNP A/G G A A G
rs221747506
MGI SNP Detail
Alliance Variant
Chr2:118743242 Bahd1 Intron
Rr563377 821 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs3709593
MGI SNP Detail
Alliance Variant
Chr2:118743373 Bahd1 Intron
Rr563377 690 bp proximal
SNP C/T C C T C T C
rs586118305
MGI SNP Detail
Alliance Variant
Chr2:118743406 Bahd1 Intron
Rr563377 657 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252821205
MGI SNP Detail
Alliance Variant
Chr2:118743515 Bahd1 Intron
Rr563377 548 bp proximal
SNP A/G A A A G G G G G A A G G G G G G G G G A G G G G G G G G G G G A A G G G G G G G G G A G G G G G G G G G G
rs33395328
MGI SNP Detail
Alliance Variant
Chr2:118743636 Bahd1 Intron
Rr563377 427 bp proximal
SNP A/G A G A G A G
rs29920203
MGI SNP Detail
Alliance Variant
Chr2:118743649 Bahd1 Intron
Rr563377 414 bp proximal
SNP C/T C C T C T C
rs256707439
MGI SNP Detail
Alliance Variant
Chr2:118743749 Bahd1 Intron
Rr563377 314 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33301902
MGI SNP Detail
Alliance Variant
Chr2:118743798 Bahd1 Intron
Rr563377 265 bp proximal
SNP C/T C C T C T C
rs580528448
MGI SNP Detail
Alliance Variant
Chr2:118743799 Bahd1 Intron
Rr563377 264 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582679198
MGI SNP Detail
Alliance Variant
Chr2:118743914 Bahd1 Intron
Rr563377 149 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs585169987
MGI SNP Detail
Alliance Variant
Chr2:118743936 Bahd1 Intron
Rr563377 127 bp proximal
SNP A/G A G G G G G A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244282756
MGI SNP Detail
Alliance Variant
Chr2:118743940 Bahd1 Intron
Rr563377 123 bp proximal
SNP C/G G G G G G G G C G G G C G G
rs27440058
MGI SNP Detail
Alliance Variant
Chr2:118744046 Bahd1 Intron
Rr563377 17 bp proximal
SNP C/T T T C T C C T C T T
rs230322645
MGI SNP Detail
Alliance Variant
Chr2:118744203 Bahd1 Intron
Rr563377 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G
rs27440057
MGI SNP Detail
Alliance Variant
Chr2:118744446 Bahd1 Intron
Rr563377 within coordinates of
SNP A/G A A G A G A
rs215555957
MGI SNP Detail
Alliance Variant
Chr2:118744450 Bahd1 Intron
Rr563377 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51326042
MGI SNP Detail
Alliance Variant
Chr2:118744452 Bahd1 Intron
Rr563377 within coordinates of
SNP A/G G G A G
rs29729176
MGI SNP Detail
Alliance Variant
Chr2:118744477 Bahd1 Intron
Rr563377 within coordinates of
SNP C/G G C G C G
rs213204126
MGI SNP Detail
Alliance Variant
Chr2:118744526 Bahd1 Intron
Rr563377 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234425800
MGI SNP Detail
Alliance Variant
Chr2:118744672 Bahd1 Intron
Rr563377 10 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262340135
MGI SNP Detail
Alliance Variant
Chr2:118744708 Bahd1 Intron
Rr563377 46 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213298189
MGI SNP Detail
Alliance Variant
Chr2:118744709 Bahd1 Intron
Rr563377 47 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240593828
MGI SNP Detail
Alliance Variant
Chr2:118744812 Bahd1 Intron
Rr563377 150 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252753374
MGI SNP Detail
Alliance Variant
Chr2:118744822 Bahd1 Intron
Rr563377 160 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs223440177
MGI SNP Detail
Alliance Variant
Chr2:118744855 Bahd1 Intron
Rr563377 193 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235547664
MGI SNP Detail
Alliance Variant
Chr2:118744870 Bahd1 Intron
Rr563377 208 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250287923
MGI SNP Detail
Alliance Variant
Chr2:118744999 Bahd1 Intron
Rr563377 337 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219974924
MGI SNP Detail
Alliance Variant
Chr2:118745039 Bahd1 Intron
Rr563377 377 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241379806
MGI SNP Detail
Alliance Variant
Chr2:118745065 Bahd1 Intron
Rr563377 403 bp distal
SNP A/G A A A G G G G G A A G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G G G G G G G G
rs265338274
MGI SNP Detail
Alliance Variant
Chr2:118745091 Bahd1 Intron
Rr563377 429 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222604318
MGI SNP Detail
Alliance Variant
Chr2:118745150 Bahd1 Intron
Rr563377 488 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33380383
MGI SNP Detail
Alliance Variant
Chr2:118745178 Bahd1 Intron
Rr563377 516 bp distal
SNP C/T T C T C T
rs33176814
MGI SNP Detail
Alliance Variant
Chr2:118745189 Bahd1 Intron
Rr563377 527 bp distal
Rr563378 within coordinates of
SNP A/T T A T A T
rs229552181
MGI SNP Detail
Alliance Variant
Chr2:118745216 Bahd1 Intron
Rr563377 554 bp distal
Rr563378 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs247072701
MGI SNP Detail
Alliance Variant
Chr2:118745228 Bahd1 Intron
Rr563377 566 bp distal
Rr563378 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29622498
MGI SNP Detail
Alliance Variant
Chr2:118745479 Bahd1 Intron
Rr563377 817 bp distal
Rr563378 within coordinates of
SNP C/T C T C C T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228639499
MGI SNP Detail
Alliance Variant
Chr2:118745583 Bahd1 Intron
Rr563377 921 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29909723
MGI SNP Detail
Alliance Variant
Chr2:118746003 Bahd1 Intron
Rr563377 1341 bp distal
SNP A/T T T A T A T
rs33146646
MGI SNP Detail
Alliance Variant
Chr2:118746013 Bahd1 Intron
Rr563377 1351 bp distal
SNP A/C C C A C A C
rs29519629
MGI SNP Detail
Alliance Variant
Chr2:118746125 Bahd1 Intron
Rr563377 1463 bp distal
SNP A/G G G A G A G
rs246153458
MGI SNP Detail
Alliance Variant
Chr2:118746174 Bahd1 Intron
Rr563377 1512 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs217128707
MGI SNP Detail
Alliance Variant
Chr2:118746265 Bahd1 Intron
Rr563377 1603 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32867664
MGI SNP Detail
Alliance Variant
Chr2:118746280 Bahd1 Intron
Rr563377 1618 bp distal
SNP C/T T T C T C T
rs250434899
MGI SNP Detail
Alliance Variant
Chr2:118746361 Bahd1 Intron
Bahd1 Splice-Site
Rr563377 1699 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46342582
MGI SNP Detail
Alliance Variant
Chr2:118746418 Bahd1 Coding-Synonymous
Rr563377 1756 bp distal
SNP A/G G G G A G
rs29520193
MGI SNP Detail
Alliance Variant
Chr2:118746496 Bahd1 Coding-Synonymous
Rr563377 1834 bp distal
SNP A/G A A G A G A
rs257990102
MGI SNP Detail
Alliance Variant
Chr2:118746498 Bahd1 Coding-NonSynonymous
Rr563377 1836 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222322797
MGI SNP Detail
Alliance Variant
Chr2:118746631 Bahd1 Coding-Synonymous
Rr563377 1969 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33064730
MGI SNP Detail
Alliance Variant
Chr2:118746649 Bahd1 Coding-Synonymous
Rr563377 1987 bp distal
SNP A/G G G A G A G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 63 of 63

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

Building initial tooltip...