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Mouse SNP Summary
Symbol
Name
ID 		Rr563601
regulatory region 563601
MGI:8025733

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Showing SNP(s) 1 - 40 of 40

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27424552
MGI SNP Detail		 Chr2:119725644 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Rr563601 1984 bp proximal
 SNP A/G G G G G G G G A G G A A G G A G G
rs27424551
MGI SNP Detail
Alliance Variant		 Chr2:119725763 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1865 bp proximal
 SNP G/T G G G G G G T G G G T T G G T G G
rs27424550
MGI SNP Detail
Alliance Variant		 Chr2:119725819 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1809 bp proximal
 SNP A/G A A G A G A A A A A A A A A A A G A
rs27424549
MGI SNP Detail
Alliance Variant		 Chr2:119725929 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1699 bp proximal
 SNP A/G G G A A A G G A A A G A G A A G
rs256607765
MGI SNP Detail
Alliance Variant		 Chr2:119725940 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1688 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214135946
MGI SNP Detail
Alliance Variant		 Chr2:119726045 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1583 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240773196
MGI SNP Detail
Alliance Variant		 Chr2:119726127 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1501 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C
rs252041225
MGI SNP Detail
Alliance Variant		 Chr2:119726200 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1428 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217122787
MGI SNP Detail
Alliance Variant		 Chr2:119726212 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1416 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235282564
MGI SNP Detail
Alliance Variant		 Chr2:119726213 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1415 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27424548
MGI SNP Detail
Alliance Variant		 Chr2:119726214 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1414 bp proximal
 SNP G/T T T G G G T G G G G G G G G G G
rs212054711
MGI SNP Detail
Alliance Variant		 Chr2:119726345 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1283 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27424547
MGI SNP Detail
Alliance Variant		 Chr2:119726352 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1276 bp proximal
 SNP G/T G G G G G G G G G G G G G T
rs29720196
MGI SNP Detail
Alliance Variant		 Chr2:119726408 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1220 bp proximal
 SNP C/T C T C T C T
rs47288025
MGI SNP Detail
Alliance Variant		 Chr2:119726568 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 1060 bp proximal
 SNP C/G G C C G C
rs249402796
MGI SNP Detail
Alliance Variant		 Chr2:119726663 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 965 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251377542
MGI SNP Detail
Alliance Variant		 Chr2:119726909 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 719 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222847193
MGI SNP Detail
Alliance Variant		 Chr2:119726924 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 704 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27424546
MGI SNP Detail
Alliance Variant		 Chr2:119726961 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 667 bp proximal
 SNP A/T A A T T A T A T T A
rs254650803
MGI SNP Detail
Alliance Variant		 Chr2:119727380 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563600 within coordinates of
Rr563601 248 bp proximal
 SNP A/T T T A A A A A T T T T A A A A A A T A T A A A A A A A T A A T T A T A T T A A A A T A T A A A A A A T A
rs228790941
MGI SNP Detail
Alliance Variant		 Chr2:119727382 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Gm75585 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563600 within coordinates of
Rr563601 246 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G
rs244596264
MGI SNP Detail
Alliance Variant		 Chr2:119727679 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27424545
MGI SNP Detail
Alliance Variant		 Chr2:119727750 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 31 bp distal
Rr563602 within coordinates of
Tssr19669 within coordinates of
 SNP C/G G C G G G C G
rs232614134
MGI SNP Detail
Alliance Variant		 Chr2:119727753 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 34 bp distal
Rr563602 within coordinates of
Tssr19669 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs257565280
MGI SNP Detail
Alliance Variant		 Chr2:119727798 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 79 bp distal
Rr563602 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29533741
MGI SNP Detail
Alliance Variant		 Chr2:119728047 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 328 bp distal
Rr563602 within coordinates of
Tssr19670 within coordinates of
 SNP G/T T G G
rs32966010
MGI SNP Detail
Alliance Variant		 Chr2:119728236 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 517 bp distal
Rr563602 within coordinates of
 SNP A/G G G A A G
rs243979287
MGI SNP Detail
Alliance Variant		 Chr2:119728319 4930485G23Rik within coordinates of
Cpgi12132 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga mRNA-UTR
Mga Noncoding-Transcript-Variant
Rr563601 600 bp distal
Rr563602 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33004558
MGI SNP Detail
Alliance Variant		 Chr2:119728507 4930485G23Rik within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 788 bp distal
Rr563602 within coordinates of
 SNP A/T T A T T A
rs579612342
MGI SNP Detail
Alliance Variant		 Chr2:119728676 4930485G23Rik within coordinates of
Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 957 bp distal
Rr563602 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33421421
MGI SNP Detail
Alliance Variant		 Chr2:119728732 4930485G23Rik within coordinates of
Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1013 bp distal
Rr563602 within coordinates of
 SNP A/G A A G G G
rs33227928
MGI SNP Detail
Alliance Variant		 Chr2:119728738 4930485G23Rik within coordinates of
Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1019 bp distal
Rr563602 within coordinates of
 SNP A/G A A G G G
rs27424544
MGI SNP Detail
Alliance Variant		 Chr2:119728770 4930485G23Rik within coordinates of
Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1051 bp distal
Rr563602 within coordinates of
 SNP C/T C T C C C T C
rs33458137
MGI SNP Detail
Alliance Variant		 Chr2:119728820 4930485G23Rik within coordinates of
Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1101 bp distal
Rr563602 within coordinates of
Tssr25832 within coordinates of
 SNP G/T G G G T G T G
rs33400191
MGI SNP Detail
Alliance Variant		 Chr2:119728869 4930485G23Rik within coordinates of
Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1150 bp distal
Rr563602 within coordinates of
 SNP C/T C C T C T C T
rs222875914
MGI SNP Detail
Alliance Variant		 Chr2:119728903 Cpgi12133 within coordinates of
Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1184 bp distal
Rr563602 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27424543
MGI SNP Detail
Alliance Variant		 Chr2:119729046 Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1327 bp distal
Rr563602 within coordinates of
 SNP C/G C G C C G C
rs249014940
MGI SNP Detail
Alliance Variant		 Chr2:119729097 Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1378 bp distal
Rr563602 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27424542
MGI SNP Detail
Alliance Variant		 Chr2:119729153 Gm75581 within coordinates of
Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1434 bp distal
 SNP A/G G G G G G G A
rs220488127
MGI SNP Detail
Alliance Variant		 Chr2:119729712 Mga Intron
Mga Noncoding-Transcript-Variant
Rr563601 1993 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 40 of 40
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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