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Mouse SNP Summary
Symbol
Name
ID
Rr563754
regulatory region 563754
MGI:8025886

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49057619
MGI SNP Detail
Chr2:120805586 Rr563754 1938 bp proximal
SNP C/T C T C
rs50940749
MGI SNP Detail
Chr2:120805618 Rr563754 1906 bp proximal
SNP A/G A G A
rs51849366
MGI SNP Detail
Chr2:120805713 Rr563754 1811 bp proximal
SNP A/G A G A
rs579620750
MGI SNP Detail
Chr2:120805715 Rr563754 1809 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs48537776
MGI SNP Detail
Chr2:120805733 Rr563754 1791 bp proximal
SNP C/T T C T
rs263565441
MGI SNP Detail
Chr2:120805741 Rr563754 1783 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27423090
MGI SNP Detail
Chr2:120805895 Rr563754 1629 bp proximal
SNP C/T C C C C C T T C C T C C
rs49493409
MGI SNP Detail
Chr2:120805899 Rr563754 1625 bp proximal
SNP C/T T T C T
rs216354388
MGI SNP Detail
Chr2:120805903 Rr563754 1621 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224655655
MGI SNP Detail
Chr2:120806142 Rr563754 1382 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs243337925
MGI SNP Detail
Chr2:120806170 Rr563754 1354 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47773620
MGI SNP Detail
Chr2:120806173 Rr563754 1351 bp proximal
SNP A/T A A T A
rs233249374
MGI SNP Detail
Chr2:120806179 Rr563754 1345 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262133297
MGI SNP Detail
Chr2:120806193 Rr563754 1331 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs45786721
MGI SNP Detail
Chr2:120806209 Rr563754 1315 bp proximal
SNP C/T C C T C
rs240405232
MGI SNP Detail
Chr2:120806231 Rr563754 1293 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs260953932
MGI SNP Detail
Chr2:120806294 Rr563754 1230 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222034349
MGI SNP Detail
Chr2:120806297 Rr563754 1227 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236766378
MGI SNP Detail
Chr2:120806328 Rr563754 1196 bp proximal
SNP A/G/T A A A G A A G G A A A A A A A A A A A A A A A G G A G A A G A A A A A G A A A G A A A G A G A G T A A A G
rs49704331
MGI SNP Detail
Chr2:120806333 Rr563754 1191 bp proximal
SNP C/T C T C
rs220151621
MGI SNP Detail
Chr2:120806346 Rr563754 1178 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242985184
MGI SNP Detail
Chr2:120806423 Rr563754 1101 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs265674653
MGI SNP Detail
Chr2:120806424 Rr563754 1100 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27423089
MGI SNP Detail
Chr2:120806453 Rr563754 1071 bp proximal
SNP C/T T T T T T T T C C T T C T T
rs251320223
MGI SNP Detail
Chr2:120806476 Rr563749 within coordinates of
Rr563754 1048 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29523586
MGI SNP Detail
Chr2:120806621 Rr563754 903 bp proximal
SNP C/T C T T C
rs224710756
MGI SNP Detail
Chr2:120806671 Rr563754 853 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32846383
MGI SNP Detail
Chr2:120806683 Rr563754 841 bp proximal
SNP A/G G A A G
rs33446124
MGI SNP Detail
Chr2:120806718 Rr563754 806 bp proximal
SNP A/G A G G A
rs29861566
MGI SNP Detail
Chr2:120806725 Rr563754 799 bp proximal
SNP A/T A T
rs250999747
MGI SNP Detail
Chr2:120806770 Rr563754 754 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs217454211
MGI SNP Detail
Chr2:120806806 Rr563754 718 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs238140253
MGI SNP Detail
Chr2:120806846 Rr563754 678 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33481291
MGI SNP Detail
Alliance Variant
Chr2:120807206 Rr563752 within coordinates of
Rr563754 318 bp proximal
Tmem62 Noncoding-Transcript-Variant
SNP A/G A G
rs29957156
MGI SNP Detail
Alliance Variant
Chr2:120807362 Rr563752 within coordinates of
Rr563754 162 bp proximal
Tmem62 Noncoding-Transcript-Variant
SNP A/T A T T A
rs29773818
MGI SNP Detail
Alliance Variant
Chr2:120807592 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Rr563755 within coordinates of
Tmem62 mRNA-UTR
Tmem62 Noncoding-Transcript-Variant
SNP A/T A T A T A
rs248192110
MGI SNP Detail
Alliance Variant
Chr2:120807672 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 mRNA-UTR
Tmem62 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs33615696
MGI SNP Detail
Alliance Variant
Chr2:120807726 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 mRNA-UTR
Tmem62 Noncoding-Transcript-Variant
SNP C/G C G C G C
rs29769456
MGI SNP Detail
Alliance Variant
Chr2:120807809 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 Coding-Synonymous
Tmem62 Noncoding-Transcript-Variant
SNP A/G A G G
rs259621714
MGI SNP Detail
Alliance Variant
Chr2:120807830 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 Coding-Synonymous
Tmem62 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585877369
MGI SNP Detail
Alliance Variant
Chr2:120807836 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 Coding-Synonymous
Tmem62 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27423088
MGI SNP Detail
Alliance Variant
Chr2:120807875 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 Coding-Synonymous
Tmem62 Noncoding-Transcript-Variant
SNP C/T C C C C C C T C C T T C C C C C
rs248203404
MGI SNP Detail
Alliance Variant
Chr2:120807912 Cpgi12148 within coordinates of
Rr563754 within coordinates of
Tmem62 Coding-NonSynonymous
Tmem62 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260646440
MGI SNP Detail
Alliance Variant
Chr2:120808365 Rr563754 341 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218809614
MGI SNP Detail
Alliance Variant
Chr2:120808378 Rr563754 354 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236870584
MGI SNP Detail
Alliance Variant
Chr2:120808446 Rr563754 422 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27423087
MGI SNP Detail
Alliance Variant
Chr2:120808453 Rr563754 429 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A C A
rs229618381
MGI SNP Detail
Alliance Variant
Chr2:120808493 Rr563754 469 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232500758
MGI SNP Detail
Alliance Variant
Chr2:120808574 Rr563754 550 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27423086
MGI SNP Detail
Alliance Variant
Chr2:120808577 Rr563754 553 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G G G A G A G G G A G G G G G G G A G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27423085
MGI SNP Detail
Alliance Variant
Chr2:120808666 Rr563754 642 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/T T A T A T T A A T A T A
rs259067183
MGI SNP Detail
Alliance Variant
Chr2:120808728 Rr563754 704 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G G A
rs27423084
MGI SNP Detail
Alliance Variant
Chr2:120808734 Rr563754 710 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C G G C C G C C
rs27423083
MGI SNP Detail
Alliance Variant
Chr2:120808769 Rr563754 745 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G A A A A A A G G G A A
rs215280279
MGI SNP Detail
Alliance Variant
Chr2:120808908 Rr563754 884 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236263916
MGI SNP Detail
Alliance Variant
Chr2:120809040 Rr563754 1016 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs214058378
MGI SNP Detail
Alliance Variant
Chr2:120809090 Rr397244 within coordinates of
Rr563754 1066 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T T T T T C T T T T T T C C C C C C T T T T C T T T T C T C T T C T T T T T T C T T T T T T C T T T T
rs263485389
MGI SNP Detail
Alliance Variant
Chr2:120809266 Rr397244 within coordinates of
Rr563754 1242 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27423082
MGI SNP Detail
Alliance Variant
Chr2:120809286 Rr397244 within coordinates of
Rr563754 1262 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T T T T T T C T T T T T C T T T
rs251560940
MGI SNP Detail
Alliance Variant
Chr2:120809356 Rr397244 within coordinates of
Rr563754 1332 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/G A G
rs254193801
MGI SNP Detail
Alliance Variant
Chr2:120809856 Rr563754 1832 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27423081
MGI SNP Detail
Alliance Variant
Chr2:120809868 Rr563754 1844 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T T T T T T T T C T T T T C C C T T C T T
rs29671674
MGI SNP Detail
Alliance Variant
Chr2:120809953 Rr563754 1929 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP C/T T C T C C T
rs33524314
MGI SNP Detail
Alliance Variant
Chr2:120810010 Rr563754 1986 bp distal
Tmem62 Intron
Tmem62 Noncoding-Transcript-Variant
SNP A/C C A A
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Showing SNP(s) 1 - 64 of 64

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory