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Mouse SNP Summary
Symbol
Name
ID 		Rr563799
regulatory region 563799
MGI:8025931

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225554449
MGI SNP Detail
Alliance Variant		 Chr2:121123644 Map1a Intron
Rr563799 1801 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs244717794
MGI SNP Detail
Alliance Variant		 Chr2:121123687 Map1a Intron
Rr563799 1758 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33641917
MGI SNP Detail
Alliance Variant		 Chr2:121123688 Map1a Intron
Rr563799 1757 bp proximal
 SNP C/T C C T T C C
rs220402147
MGI SNP Detail
Alliance Variant		 Chr2:121123827 Map1a Intron
Rr563799 1618 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29922076
MGI SNP Detail
Alliance Variant		 Chr2:121123949 Map1a Intron
Rr563799 1496 bp proximal
 SNP C/T C C T T C C
rs257930583
MGI SNP Detail
Alliance Variant		 Chr2:121124331 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 1114 bp proximal
 SNP A/C/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A C A A A A
rs228283934
MGI SNP Detail
Alliance Variant		 Chr2:121124332 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 1113 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246587360
MGI SNP Detail
Alliance Variant		 Chr2:121124379 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 1066 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs266150676
MGI SNP Detail
Alliance Variant		 Chr2:121124496 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 949 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C
rs233312383
MGI SNP Detail
Alliance Variant		 Chr2:121124640 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 805 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254379646
MGI SNP Detail
Alliance Variant		 Chr2:121124759 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 686 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G
rs211980604
MGI SNP Detail
Alliance Variant		 Chr2:121124887 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 558 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232009940
MGI SNP Detail
Alliance Variant		 Chr2:121124925 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 520 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs243663328
MGI SNP Detail
Alliance Variant		 Chr2:121124999 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 446 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs33202176
MGI SNP Detail
Alliance Variant		 Chr2:121125017 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 428 bp proximal
 SNP C/T T C T C T
rs232804424
MGI SNP Detail
Alliance Variant		 Chr2:121125018 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 427 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260645723
MGI SNP Detail
Alliance Variant		 Chr2:121125074 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 371 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33173616
MGI SNP Detail
Alliance Variant		 Chr2:121125100 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 345 bp proximal
 SNP C/G G C G C G
rs27439869
MGI SNP Detail
Alliance Variant		 Chr2:121125256 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 189 bp proximal
 SNP C/T T T T T C T C C C T T T
rs260703052
MGI SNP Detail
Alliance Variant		 Chr2:121125257 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 188 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs223087872
MGI SNP Detail
Alliance Variant		 Chr2:121125258 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 187 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239999785
MGI SNP Detail
Alliance Variant		 Chr2:121125290 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 155 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs257784328
MGI SNP Detail
Alliance Variant		 Chr2:121125466 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222239194
MGI SNP Detail
Alliance Variant		 Chr2:121125467 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240874802
MGI SNP Detail
Alliance Variant		 Chr2:121125476 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33041598
MGI SNP Detail
Alliance Variant		 Chr2:121125511 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 within coordinates of
 SNP C/T C C T T C
rs234163887
MGI SNP Detail
Alliance Variant		 Chr2:121125615 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs250108175
MGI SNP Detail
Alliance Variant		 Chr2:121125693 Gm14978 within coordinates of
Map1a Intron
Rr373768 within coordinates of
Rr563799 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29716467
MGI SNP Detail
Alliance Variant		 Chr2:121125792 Gm14978 within coordinates of
Map1a Intron
Rr563799 within coordinates of
 SNP A/G G G G A G A G
rs226206049
MGI SNP Detail
Alliance Variant		 Chr2:121125817 Gm14978 within coordinates of
Map1a Intron
Rr563799 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243722574
MGI SNP Detail
Alliance Variant		 Chr2:121125827 Gm14978 within coordinates of
Map1a Intron
Rr563799 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32850086
MGI SNP Detail
Alliance Variant		 Chr2:121125867 Gm14978 within coordinates of
Map1a Intron
Rr563799 within coordinates of
 SNP A/G A A G A G A
rs3704759
MGI SNP Detail
Alliance Variant		 Chr2:121125990 Gm14978 within coordinates of
Map1a Intron
Map1a mRNA-UTR
Map1a Noncoding-Transcript-Variant
Rr563799 45 bp distal
Rr563800 within coordinates of
 SNP C/T T T T C T C T
rs260127857
MGI SNP Detail
Alliance Variant		 Chr2:121126045 Gm14978 within coordinates of
Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 100 bp distal
Rr563800 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs217611976
MGI SNP Detail
Alliance Variant		 Chr2:121126052 Gm14978 within coordinates of
Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 107 bp distal
Rr563800 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3719586
MGI SNP Detail
Alliance Variant		 Chr2:121126060 Gm14978 within coordinates of
Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 115 bp distal
Rr563800 within coordinates of
 SNP A/G A A A G A G A
rs255135222
MGI SNP Detail
Alliance Variant		 Chr2:121126064 Gm14978 within coordinates of
Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 119 bp distal
Rr563800 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220088587
MGI SNP Detail
Alliance Variant		 Chr2:121126206 Gm14978 within coordinates of
Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 261 bp distal
Rr563800 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231355591
MGI SNP Detail
Alliance Variant		 Chr2:121126213 Gm14978 within coordinates of
Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 268 bp distal
Rr563800 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs45719571
MGI SNP Detail
Alliance Variant		 Chr2:121126525 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 580 bp distal
Rr563801 within coordinates of
 SNP A/C A C A
rs222116514
MGI SNP Detail
Alliance Variant		 Chr2:121126661 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 716 bp distal
Rr563801 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs3725110
MGI SNP Detail
Alliance Variant		 Chr2:121126943 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 998 bp distal
Rr563801 within coordinates of
 SNP A/T T A
rs240855155
MGI SNP Detail
Alliance Variant		 Chr2:121126988 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1043 bp distal
 SNP A/G G A
rs258715381
MGI SNP Detail
Alliance Variant		 Chr2:121126990 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1045 bp distal
 SNP A/C C A
rs226142993
MGI SNP Detail
Alliance Variant		 Chr2:121127105 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1160 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs584757585
MGI SNP Detail
Alliance Variant		 Chr2:121127129 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1184 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs3666517
MGI SNP Detail
Alliance Variant		 Chr2:121127137 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1192 bp distal
 SNP A/C A A A A C A C C A A C A A
rs3666647
MGI SNP Detail
Alliance Variant		 Chr2:121127215 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1270 bp distal
 SNP A/G G G G A G A G
rs226276313
MGI SNP Detail
Alliance Variant		 Chr2:121127302 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1357 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27439868
MGI SNP Detail
Alliance Variant		 Chr2:121127309 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1364 bp distal
 SNP C/T C C C C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257993480
MGI SNP Detail
Alliance Variant		 Chr2:121127435 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1490 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs27439867
MGI SNP Detail
Alliance Variant		 Chr2:121127504 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1559 bp distal
 SNP G/T T T T G T
rs254726562
MGI SNP Detail
Alliance Variant		 Chr2:121127525 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1580 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218085603
MGI SNP Detail
Alliance Variant		 Chr2:121127575 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1630 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578410553
MGI SNP Detail
Alliance Variant		 Chr2:121127644 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1699 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33467316
MGI SNP Detail
Alliance Variant		 Chr2:121127678 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1733 bp distal
 SNP A/G A A A G G A
rs252039309
MGI SNP Detail
Alliance Variant		 Chr2:121127680 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1735 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214072875
MGI SNP Detail
Alliance Variant		 Chr2:121127774 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1829 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231453852
MGI SNP Detail
Alliance Variant		 Chr2:121127785 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1840 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253398799
MGI SNP Detail
Alliance Variant		 Chr2:121127786 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1841 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216224337
MGI SNP Detail
Alliance Variant		 Chr2:121127843 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1898 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs240334484
MGI SNP Detail
Alliance Variant		 Chr2:121127847 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1902 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51259171
MGI SNP Detail
Alliance Variant		 Chr2:121127895 Map1a Intron
Map1a Noncoding-Transcript-Variant
Rr563799 1950 bp distal
 SNP A/G A A G A
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Showing SNP(s) 1 - 63 of 63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory