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Mouse SNP Summary
Symbol
Name
ID 		Rr563825
regulatory region 563825
MGI:8025957

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Showing SNP(s) 1 - 52 of 52

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46058050
MGI SNP Detail		 Chr2:121276882 Rr563825 1975 bp proximal
 SNP C/T T T T C T
rs245448954
MGI SNP Detail		 Chr2:121276918 Rr563825 1939 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215576649
MGI SNP Detail		 Chr2:121277105 Gm75262 within coordinates of
Rr563825 1752 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
rs236560702
MGI SNP Detail		 Chr2:121277139 Gm75262 within coordinates of
Rr563825 1718 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs45909650
MGI SNP Detail		 Chr2:121277183 Gm75262 within coordinates of
Rr563825 1674 bp proximal
 SNP C/G C C C G C
rs50544401
MGI SNP Detail		 Chr2:121277237 Gm75262 within coordinates of
Rr563825 1620 bp proximal
 SNP C/T T T C T
rs48896381
MGI SNP Detail		 Chr2:121277241 Gm75262 within coordinates of
Rr563825 1616 bp proximal
 SNP G/T T T T G T
rs48616591
MGI SNP Detail		 Chr2:121277301 Gm75262 within coordinates of
Rr563825 1556 bp proximal
 SNP A/C A A A C A
rs50132368
MGI SNP Detail		 Chr2:121277302 Gm75262 within coordinates of
Rr563825 1555 bp proximal
 SNP G/T T T T G T
rs235902101
MGI SNP Detail		 Chr2:121277367 Gm75262 within coordinates of
Rr563825 1490 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27425260
MGI SNP Detail		 Chr2:121277400 Gm75262 within coordinates of
Rr563825 1457 bp proximal
 SNP A/G G G G G G G G G G A A G G A G G
rs222249923
MGI SNP Detail		 Chr2:121277497 Gm75262 within coordinates of
Rr563825 1360 bp proximal
 SNP A/C A A C A A A A C C C C C A C A A A C A A A C A A A A
rs246375800
MGI SNP Detail		 Chr2:121277543 Gm75262 within coordinates of
Rr563825 1314 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265505841
MGI SNP Detail		 Chr2:121277644 Gm75262 within coordinates of
Rr563825 1213 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs233718245
MGI SNP Detail		 Chr2:121277807 Gm75262 within coordinates of
Rr563825 1050 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255352953
MGI SNP Detail		 Chr2:121278004 Gm75262 within coordinates of
Rr563825 853 bp proximal
 SNP C/G G C
rs256521483
MGI SNP Detail		 Chr2:121278088 Gm75262 within coordinates of
Rr563825 769 bp proximal
 SNP C/T T T T T C T T T T C C C C C C T T T T C T T T T C T C T T T T T T T T C T T T T T T T T T T T
rs224021521
MGI SNP Detail		 Chr2:121278095 Gm75262 within coordinates of
Rr563825 762 bp proximal
 SNP C/T C C C C T C C C C C T T T T T T C C C C C C C C C T C T C C C C C C C C C C C C C C C C C C C C
rs213342117
MGI SNP Detail		 Chr2:121278172 Gm75262 within coordinates of
Rr563825 685 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs46433681
MGI SNP Detail		 Chr2:121278191 Gm75262 within coordinates of
Rr563825 666 bp proximal
 SNP C/T T T T C T
rs253504401
MGI SNP Detail		 Chr2:121278210 Gm75262 within coordinates of
Rr563825 647 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T C
rs216667791
MGI SNP Detail		 Chr2:121278238 Gm75262 within coordinates of
Rr563825 619 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235402701
MGI SNP Detail		 Chr2:121278320 Gm75262 within coordinates of
Rr563825 537 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs252823984
MGI SNP Detail		 Chr2:121278410 Gm75262 within coordinates of
Rr563825 447 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584508640
MGI SNP Detail		 Chr2:121278510 Gm75262 within coordinates of
Rr563825 347 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579110118
MGI SNP Detail		 Chr2:121278536 Gm75262 within coordinates of
Rr563825 321 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213021010
MGI SNP Detail		 Chr2:121278576 Gm75262 within coordinates of
Rr563825 281 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G
rs230144933
MGI SNP Detail		 Chr2:121278657 Gm75262 within coordinates of
Rr563825 200 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs48774210
MGI SNP Detail		 Chr2:121278673 Gm75262 within coordinates of
Rr563825 184 bp proximal
 SNP C/T C C T C
rs49484528
MGI SNP Detail		 Chr2:121278815 Gm75262 within coordinates of
Rr563825 42 bp proximal
 SNP C/G G G C G
rs582472456
MGI SNP Detail		 Chr2:121278977 Gm75262 within coordinates of
Rr563825 99 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52462013
MGI SNP Detail		 Chr2:121279020 Gm75262 within coordinates of
Rr563825 142 bp distal
 SNP C C C
rs241208314
MGI SNP Detail		 Chr2:121279092 Gm75262 within coordinates of
Rr563825 214 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
rs258591941
MGI SNP Detail		 Chr2:121279353 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 475 bp distal
Rr563826 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29778055
MGI SNP Detail		 Chr2:121279405 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 527 bp distal
Rr563826 within coordinates of
 SNP C/T T T C T C T
rs33235901
MGI SNP Detail		 Chr2:121279620 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr397250 within coordinates of
Rr563825 742 bp distal
Rr563826 within coordinates of
 SNP A/C A A C A C A
rs256659967
MGI SNP Detail		 Chr2:121279630 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr397250 within coordinates of
Rr563825 752 bp distal
Rr563826 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs218086085
MGI SNP Detail
Alliance Variant		 Chr2:121279691 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr397250 within coordinates of
Rr563825 813 bp distal
Rr563826 within coordinates of
Serf2 mRNA-UTR
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29668782
MGI SNP Detail
Alliance Variant		 Chr2:121279728 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr397250 within coordinates of
Rr563825 850 bp distal
Rr563826 within coordinates of
Serf2 mRNA-UTR
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/T T T C T
rs29863369
MGI SNP Detail
Alliance Variant		 Chr2:121279733 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr397250 within coordinates of
Rr563825 855 bp distal
Rr563826 within coordinates of
Serf2 mRNA-UTR
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/G C C G C
rs232059331
MGI SNP Detail
Alliance Variant		 Chr2:121279782 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr397250 within coordinates of
Rr563825 904 bp distal
Rr563826 within coordinates of
Serf2 mRNA-UTR
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs32900016
MGI SNP Detail
Alliance Variant		 Chr2:121279961 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1083 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/T C C T C T C
rs263343394
MGI SNP Detail
Alliance Variant		 Chr2:121280008 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1130 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs229565027
MGI SNP Detail
Alliance Variant		 Chr2:121280082 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1204 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs29764083
MGI SNP Detail
Alliance Variant		 Chr2:121280151 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1273 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP G/T T T G G T
rs213161198
MGI SNP Detail
Alliance Variant		 Chr2:121280164 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1286 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A
rs230278328
MGI SNP Detail
Alliance Variant		 Chr2:121280270 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1392 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs264536264
MGI SNP Detail
Alliance Variant		 Chr2:121280309 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1431 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP A/G A G
rs251663579
MGI SNP Detail
Alliance Variant		 Chr2:121280329 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1451 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs214430405
MGI SNP Detail
Alliance Variant		 Chr2:121280346 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1468 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238717856
MGI SNP Detail
Alliance Variant		 Chr2:121280412 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1534 bp distal
Serf2 Intron
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262944812
MGI SNP Detail
Alliance Variant		 Chr2:121280505 Cpgi12159 within coordinates of
Gm75262 within coordinates of
Rr563825 1627 bp distal
Serf2 Coding-Synonymous
Serf2 Noncoding-Transcript-Variant
Serinc4 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 52 of 52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory