Rr564596 Mouse SNP Summary

Mouse SNP Summary

Symbol
Name
ID

Rr564596
regulatory region 564596
MGI:8026728

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Showing SNP(s) 1 - 100 of 133

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SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50736066 MGI SNP Detail Alliance Variant	Chr2:127597137	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1949 bp proximal	SNP	A/G				G	A																					A
rs49769619 MGI SNP Detail Alliance Variant	Chr2:127597150	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1936 bp proximal	SNP	A/G				A	G																					G
rs47007890 MGI SNP Detail Alliance Variant	Chr2:127597172	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1914 bp proximal	SNP	A/G				A	G																					G
rs262394200 MGI SNP Detail Alliance Variant	Chr2:127597179	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1907 bp proximal	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
rs224044408 MGI SNP Detail Alliance Variant	Chr2:127597208	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1878 bp proximal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
rs46431609 MGI SNP Detail Alliance Variant	Chr2:127597214	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1872 bp proximal	SNP	C/T				C	T
rs33706042 MGI SNP Detail Alliance Variant	Chr2:127597257	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1829 bp proximal	SNP	C/T				C	T											C										C						C																		T
rs47285507 MGI SNP Detail Alliance Variant	Chr2:127597260	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1826 bp proximal	SNP	G/T				T	G
rs28269110 MGI SNP Detail Alliance Variant	Chr2:127597323	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1763 bp proximal	SNP	C/T		C			C	C		C		C											T						C			C							C				C													C
rs249818827 MGI SNP Detail Alliance Variant	Chr2:127597327	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1759 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs28269109 MGI SNP Detail Alliance Variant	Chr2:127597336	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1750 bp proximal	SNP	A/G		A		A	G	A		G		A											G						A			A							A				A													G
rs28269108 MGI SNP Detail Alliance Variant	Chr2:127597349	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1737 bp proximal	SNP	A/G		A		A	G	A		G		A											A						A			A							A				A													G
rs265365507 MGI SNP Detail Alliance Variant	Chr2:127597364	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1722 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs28269107 MGI SNP Detail Alliance Variant	Chr2:127597433	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1653 bp proximal	SNP	A/G		G			A	G		A		G											G						G			G							G				G													A
rs28269106 MGI SNP Detail Alliance Variant	Chr2:127597469	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1617 bp proximal	SNP	C/G		C		C	G	C		G		C											C						C			C							C				C													G
rs259419547 MGI SNP Detail Alliance Variant	Chr2:127597494	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1592 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
rs228964788 MGI SNP Detail Alliance Variant	Chr2:127597512	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1574 bp proximal	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
rs241984100 MGI SNP Detail Alliance Variant	Chr2:127597520	Nphp1 Intron Nphp1 mRNA-UTR Rr564596 1566 bp proximal	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
rs29908882 MGI SNP Detail Alliance Variant	Chr2:127597647	Nphp1 Intron Rr564596 1439 bp proximal	SNP	A/T					T											A
rs33420366 MGI SNP Detail Alliance Variant	Chr2:127597648	Nphp1 Intron Rr564596 1438 bp proximal	SNP	A/T					T											A
rs238549089 MGI SNP Detail Alliance Variant	Chr2:127597649	Nphp1 Intron Rr564596 1437 bp proximal	SNP	A	A	A	A		A	A	A	A	A	A	A			A	A	A	A	A	A	A	A		A				A			A	A	A	A	A			A		A	A	A		A		A	A		A	A	A	A	A		A	A
rs254422259 MGI SNP Detail Alliance Variant	Chr2:127597650	Nphp1 Intron Rr564596 1436 bp proximal	SNP	A/T	A	A	A		A	A	A	A	A	A	A		T	A	A	A	A	A	A	A			A				A			A	A	A	A	A			A	A	A	A	A			A	A	A	A	A	A	A	A	A	A	A	A
rs217367740 MGI SNP Detail Alliance Variant	Chr2:127597689	Nphp1 Intron Rr564596 1397 bp proximal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
rs229854202 MGI SNP Detail Alliance Variant	Chr2:127597713	Nphp1 Intron Rr564596 1373 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
rs28269105 MGI SNP Detail Alliance Variant	Chr2:127597742	Nphp1 Intron Rr564596 1344 bp proximal	SNP	C/T		C			C			C													C						C					T																		C				T
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221594000 MGI SNP Detail Alliance Variant	Chr2:127597746	Nphp1 Intron Rr564596 1340 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
rs48170535 MGI SNP Detail Alliance Variant	Chr2:127597747	Nphp1 Intron Rr564596 1339 bp proximal	SNP	A/G					G																											A																		G
rs258035037 MGI SNP Detail Alliance Variant	Chr2:127597792	Nphp1 Intron Rr564596 1294 bp proximal	SNP	A/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
rs224591975 MGI SNP Detail Alliance Variant	Chr2:127597842	Nphp1 Intron Rr564596 1244 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
rs240291435 MGI SNP Detail Alliance Variant	Chr2:127597854	Nphp1 Intron Rr564596 1232 bp proximal	SNP	G/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
rs259455419 MGI SNP Detail Alliance Variant	Chr2:127597891	Nphp1 Intron Rr564596 1195 bp proximal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
rs229579201 MGI SNP Detail Alliance Variant	Chr2:127597934	Nphp1 Intron Rr564596 1152 bp proximal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	T	T	C	T	T	C	C	C	C	C	T		C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C
rs28269104 MGI SNP Detail Alliance Variant	Chr2:127598144	Nphp1 Intron Rr564596 942 bp proximal	SNP	G/T		T		T	G	T		G		T						T					T						T			T		T					T				T									G				T
rs28269103 MGI SNP Detail Alliance Variant	Chr2:127598191	Nphp1 Intron Rr564596 895 bp proximal	SNP	A/T		T		T	T	T		T		T						A					A						T			T		A					T				T									T				T
rs229372237 MGI SNP Detail Alliance Variant	Chr2:127598204	Nphp1 Intron Rr564596 882 bp proximal	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
rs6331578 MGI SNP Detail Alliance Variant	Chr2:127598220	Nphp1 Intron Rr564596 866 bp proximal	SNP	A/C		C			C	C		C								C					A			A			C			C							C				C													A
rs215397342 MGI SNP Detail Alliance Variant	Chr2:127598233	Nphp1 Intron Rr564596 853 bp proximal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs29535030 MGI SNP Detail Alliance Variant	Chr2:127598318	Nphp1 Intron Rr564596 768 bp proximal	SNP	A/G				A	G											A																A																		G
rs33456196 MGI SNP Detail Alliance Variant	Chr2:127598320	Nphp1 Intron Rr564596 766 bp proximal	SNP	G/T				G	T											G																G																		T
rs6332652 MGI SNP Detail Alliance Variant	Chr2:127598403	Nphp1 Intron Rr564596 683 bp proximal	SNP	C/G				G	C											G								C								G																		C
rs229877299 MGI SNP Detail Alliance Variant	Chr2:127598404	Nphp1 Intron Rr564596 682 bp proximal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs250360409 MGI SNP Detail Alliance Variant	Chr2:127598408	Nphp1 Intron Rr564596 678 bp proximal	SNP	C/G	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
rs6332672 MGI SNP Detail Alliance Variant	Chr2:127598411	Nphp1 Intron Rr564596 675 bp proximal	SNP	A/C				A	C											A								C								A																		C
rs33112139 MGI SNP Detail Alliance Variant	Chr2:127598418	Nphp1 Intron Rr564596 668 bp proximal	SNP	C/T				C	T											C																C																		T
rs262567214 MGI SNP Detail Alliance Variant	Chr2:127598436	Nphp1 Intron Rr564596 650 bp proximal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs224353323 MGI SNP Detail Alliance Variant	Chr2:127598512	Nphp1 Intron Rr564596 574 bp proximal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
rs233702271 MGI SNP Detail Alliance Variant	Chr2:127598548	Nphp1 Intron Rr564596 538 bp proximal	SNP	G/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
rs252826651 MGI SNP Detail Alliance Variant	Chr2:127598615	Nphp1 Intron Rr564596 471 bp proximal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs222935314 MGI SNP Detail Alliance Variant	Chr2:127598791	Nphp1 Intron Rr564596 295 bp proximal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs28269102 MGI SNP Detail Alliance Variant	Chr2:127598792	Nphp1 Intron Rr564596 294 bp proximal	SNP	C/T		C		C	T			T		C						T					T					T	C			C							C				C													T
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262148967 MGI SNP Detail Alliance Variant	Chr2:127598827	Nphp1 Intron Rr564596 259 bp proximal	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
rs221753413 MGI SNP Detail Alliance Variant	Chr2:127598838	Nphp1 Intron Rr564596 248 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs50075305 MGI SNP Detail Alliance Variant	Chr2:127598945	Nphp1 Intron Rr564596 141 bp proximal	SNP	A/G				G																						G						G																		A
rs265409843 MGI SNP Detail Alliance Variant	Chr2:127598978	Nphp1 Intron Rr564596 108 bp proximal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
rs227922247 MGI SNP Detail Alliance Variant	Chr2:127598982	Nphp1 Intron Rr564596 104 bp proximal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
rs247752652 MGI SNP Detail Alliance Variant	Chr2:127598998	Nphp1 Intron Rr564596 88 bp proximal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
rs261178858 MGI SNP Detail Alliance Variant	Chr2:127599000	Nphp1 Intron Rr564596 86 bp proximal	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
rs224104303 MGI SNP Detail Alliance Variant	Chr2:127599009	Nphp1 Intron Rr564596 77 bp proximal	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
rs254222523 MGI SNP Detail Alliance Variant	Chr2:127599022	Nphp1 Intron Rr564596 64 bp proximal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs213709495 MGI SNP Detail Alliance Variant	Chr2:127599100	Nphp1 Intron Rr564596 within coordinates of	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs238196989 MGI SNP Detail Alliance Variant	Chr2:127599105	Nphp1 Intron Rr564596 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs251605959 MGI SNP Detail Alliance Variant	Chr2:127599142	Nphp1 Intron Rr564596 within coordinates of	SNP	G/T	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
rs216210466 MGI SNP Detail Alliance Variant	Chr2:127599156	Nphp1 Intron Rr564596 within coordinates of	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs233737408 MGI SNP Detail Alliance Variant	Chr2:127599216	Nphp1 Intron Rr564596 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs252717824 MGI SNP Detail Alliance Variant	Chr2:127599241	Nphp1 Intron Rr564596 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs29961217 MGI SNP Detail Alliance Variant	Chr2:127599251	Nphp1 Intron Rr564596 within coordinates of	SNP	A/T		A		A	A											A										T
rs230236639 MGI SNP Detail Alliance Variant	Chr2:127599263	Nphp1 Intron Rr564596 within coordinates of	SNP	A/T	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
rs261790043 MGI SNP Detail Alliance Variant	Chr2:127599279	Nphp1 Intron Rr564596 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs222950829 MGI SNP Detail Alliance Variant	Chr2:127599305	Nphp1 Intron Rr564596 within coordinates of	SNP	C/G	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
rs247265262 MGI SNP Detail Alliance Variant	Chr2:127599347	Nphp1 Intron Rr564596 within coordinates of	SNP	A/C	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
rs263019526 MGI SNP Detail Alliance Variant	Chr2:127599352	Nphp1 Intron Rr564596 within coordinates of	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs29576558 MGI SNP Detail Alliance Variant	Chr2:127599368	Nphp1 Intron Rr564596 within coordinates of	SNP	A/G		G		G	G											G										A
rs241834286 MGI SNP Detail Alliance Variant	Chr2:127599373	Nphp1 Intron Rr564596 within coordinates of	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
rs261087223 MGI SNP Detail Alliance Variant	Chr2:127599383	Nphp1 Intron Rr564596 within coordinates of	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
rs224126101 MGI SNP Detail Alliance Variant	Chr2:127599432	Nphp1 Intron Rr564596 within coordinates of	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129X1/SvJ	A/J	AKR/J	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3657696 MGI SNP Detail Alliance Variant	Chr2:127599592	Nphp1 Intron Nphp1 Splice-Site Rr564596 31 bp distal	SNP	C/G		G		G	G								C			G										C
rs265030695 MGI SNP Detail Alliance Variant	Chr2:127599616	Nphp1 Coding-Synonymous Nphp1 Intron Rr564596 55 bp distal	SNP	A/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
rs230885178 MGI SNP Detail Alliance Variant	Chr2:127599726	Nphp1 Intron Rr564596 165 bp distal	SNP	A/C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs257172360 MGI SNP Detail Alliance Variant	Chr2:127599741	Nphp1 Intron Rr564596 180 bp distal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
rs215264170 MGI SNP Detail Alliance Variant	Chr2:127599749	Nphp1 Intron Rr564596 188 bp distal	SNP	C/G	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
rs233636146 MGI SNP Detail Alliance Variant	Chr2:127599752	Nphp1 Intron Rr564596 191 bp distal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
rs246890685 MGI SNP Detail Alliance Variant	Chr2:127599764	Nphp1 Intron Rr564596 203 bp distal	SNP	A/C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
rs578500163 MGI SNP Detail Alliance Variant	Chr2:127599835	Nphp1 Intron Rr564596 274 bp distal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs217427431 MGI SNP Detail Alliance Variant	Chr2:127599870	Nphp1 Intron Rr564596 309 bp distal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs236444576 MGI SNP Detail Alliance Variant	Chr2:127599876	Nphp1 Intron Rr564596 315 bp distal	SNP	C/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
rs256580769 MGI SNP Detail Alliance Variant	Chr2:127599891	Nphp1 Intron Rr564596 330 bp distal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs28269101 MGI SNP Detail Alliance Variant	Chr2:127599977	Nphp1 Intron Rr564596 416 bp distal	SNP	A/G		G			G	G		G		G			G								A					G	G			G							G				G													G
rs28269100 MGI SNP Detail Alliance Variant	Chr2:127600028	Nphp1 Intron Rr564596 467 bp distal	SNP	G/T		G		G	G	G		G		G											T					T	G			G						T	G				G													G
rs263108513 MGI SNP Detail Alliance Variant	Chr2:127600055	Nphp1 Intron Rr564596 494 bp distal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs28269099 MGI SNP Detail Alliance Variant	Chr2:127600146	Nphp1 Intron Rr564596 585 bp distal	SNP	A/C		C			C	C		C		C			C								A					C	C			C							C				C													C
rs241689292 MGI SNP Detail Alliance Variant	Chr2:127600149	Nphp1 Intron Rr564596 588 bp distal	SNP	C/G	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
rs255058252 MGI SNP Detail Alliance Variant	Chr2:127600153	Nphp1 Intron Rr564596 592 bp distal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
rs217969078 MGI SNP Detail Alliance Variant	Chr2:127600158	Nphp1 Intron Rr564596 597 bp distal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs244714731 MGI SNP Detail Alliance Variant	Chr2:127600160	Nphp1 Intron Rr564596 599 bp distal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
rs33439493 MGI SNP Detail Alliance Variant	Chr2:127600221	Nphp1 Intron Rr564596 660 bp distal	SNP	A/C					A																					C
rs230972162 MGI SNP Detail Alliance Variant	Chr2:127600223	Nphp1 Intron Rr564596 662 bp distal	SNP	A/G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
rs245272782 MGI SNP Detail Alliance Variant	Chr2:127600245	Nphp1 Intron Rr564596 684 bp distal	SNP	C/T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
rs258060151 MGI SNP Detail Alliance Variant	Chr2:127600250	Nphp1 Intron Rr564596 689 bp distal	SNP	A/G	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
rs46818927 MGI SNP Detail Alliance Variant	Chr2:127600287	Nphp1 Intron Rr564596 726 bp distal	SNP	G/T					T																					G
rs581921789 MGI SNP Detail Alliance Variant	Chr2:127600303	Nphp1 Intron Rr564596 742 bp distal	SNP	C/T	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

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Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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