About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Rr564642
regulatory region 564642
MGI:8026774

<< first < prev1 next > last >>
Showing SNP(s) 1 - 70 of 70

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232730578
MGI SNP Detail
Alliance Variant
Chr2:127927816 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1948 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263294262
MGI SNP Detail
Alliance Variant
Chr2:127927972 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1792 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27446618
MGI SNP Detail
Alliance Variant
Chr2:127927999 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1765 bp proximal
SNP C/T T T T T T C T T T T T
rs27446617
MGI SNP Detail
Alliance Variant
Chr2:127928005 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1759 bp proximal
SNP C/T T T T T T T T T T T C
rs264446946
MGI SNP Detail
Alliance Variant
Chr2:127928060 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1704 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27446616
MGI SNP Detail
Alliance Variant
Chr2:127928130 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1634 bp proximal
SNP A/G G A G A G G G G G G G G G A G
rs238189057
MGI SNP Detail
Alliance Variant
Chr2:127928190 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1574 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs226972204
MGI SNP Detail
Alliance Variant
Chr2:127928446 Acoxl Intron
Gm74890 within coordinates of
Rr564642 1318 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252527003
MGI SNP Detail
Alliance Variant
Chr2:127928561 Acoxl Intron
Rr564642 1203 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs265789163
MGI SNP Detail
Alliance Variant
Chr2:127928604 Acoxl Intron
Rr564642 1160 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232872487
MGI SNP Detail
Alliance Variant
Chr2:127928643 Acoxl Intron
Rr564642 1121 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259900521
MGI SNP Detail
Alliance Variant
Chr2:127928662 Acoxl Intron
Rr564642 1102 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47567868
MGI SNP Detail
Alliance Variant
Chr2:127928704 Acoxl Intron
Rr564642 1060 bp proximal
SNP C C
rs27446615
MGI SNP Detail
Alliance Variant
Chr2:127928790 Acoxl Intron
Rr564642 974 bp proximal
SNP A/G A G A G A A A A A A A A G G
rs27446614
MGI SNP Detail
Alliance Variant
Chr2:127928885 Acoxl Intron
Rr564641 within coordinates of
Rr564642 879 bp proximal
SNP A/G A G G A G G A A A A A G G
rs214354797
MGI SNP Detail
Alliance Variant
Chr2:127928896 Acoxl Intron
Rr564641 within coordinates of
Rr564642 868 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232849960
MGI SNP Detail
Alliance Variant
Chr2:127928913 Acoxl Intron
Rr564641 within coordinates of
Rr564642 851 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259282119
MGI SNP Detail
Alliance Variant
Chr2:127928998 Acoxl Intron
Rr564641 within coordinates of
Rr564642 766 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs226056193
MGI SNP Detail
Alliance Variant
Chr2:127929016 Acoxl Intron
Rr564641 within coordinates of
Rr564642 748 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239622590
MGI SNP Detail
Alliance Variant
Chr2:127929023 Acoxl Intron
Rr564641 within coordinates of
Rr564642 741 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264316328
MGI SNP Detail
Alliance Variant
Chr2:127929025 Acoxl Intron
Rr564641 within coordinates of
Rr564642 739 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs218350725
MGI SNP Detail
Alliance Variant
Chr2:127929048 Acoxl Intron
Rr564641 within coordinates of
Rr564642 716 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27446613
MGI SNP Detail
Alliance Variant
Chr2:127929097 Acoxl Intron
Rr564641 within coordinates of
Rr564642 667 bp proximal
SNP C/T C T T C C C C C C C C T C
rs50038759
MGI SNP Detail
Alliance Variant
Chr2:127929308 Acoxl Intron
Rr564642 456 bp proximal
SNP A/C C A
rs107774490
MGI SNP Detail
Alliance Variant
Chr2:127929323 Acoxl Intron
Rr564642 441 bp proximal
SNP A/G A A G A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248413887
MGI SNP Detail
Alliance Variant
Chr2:127929327 Acoxl Intron
Rr564642 437 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27446612
MGI SNP Detail
Alliance Variant
Chr2:127929399 Acoxl Intron
Rr564642 365 bp proximal
SNP G/T T G T G T G G T T T T T G G
rs27446611
MGI SNP Detail
Alliance Variant
Chr2:127929463 Acoxl Intron
Rr564642 301 bp proximal
SNP C/T T T T T T C C T T T T C
rs27446610
MGI SNP Detail
Alliance Variant
Chr2:127929493 Acoxl Intron
Rr564642 271 bp proximal
SNP A/G G G G G G A A G G G G G G
rs27446609
MGI SNP Detail
Alliance Variant
Chr2:127929534 Acoxl Intron
Rr564642 230 bp proximal
SNP C/T C C C C C C T T C C C C C
rs27446608
MGI SNP Detail
Alliance Variant
Chr2:127929647 Acoxl Intron
Rr564642 117 bp proximal
SNP C/T C C C C C C T T C C C C C
rs243491048
MGI SNP Detail
Alliance Variant
Chr2:127929721 Acoxl Intron
Rr564642 43 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G G G A A
rs27446607
MGI SNP Detail
Alliance Variant
Chr2:127929744 Acoxl Intron
Rr564642 20 bp proximal
SNP A/G G G A G A G G G G G G G G G A G
rs231591066
MGI SNP Detail
Alliance Variant
Chr2:127929940 Acoxl Intron
Rr564642 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs582808168
MGI SNP Detail
Alliance Variant
Chr2:127929950 Acoxl Intron
Rr564642 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs27446606
MGI SNP Detail
Alliance Variant
Chr2:127929988 Acoxl Intron
Rr564642 within coordinates of
SNP C/T C C C C C C T T C C C C
rs218051008
MGI SNP Detail
Alliance Variant
Chr2:127930020 Acoxl Intron
Rr564642 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242895930
MGI SNP Detail
Alliance Variant
Chr2:127930062 Acoxl Intron
Rr564642 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27446605
MGI SNP Detail
Alliance Variant
Chr2:127930072 Acoxl Intron
Rr564642 within coordinates of
SNP C/T C C T C T C T T C C C C C T T
rs27446604
MGI SNP Detail
Alliance Variant
Chr2:127930136 Acoxl Intron
Rr564642 within coordinates of
SNP A/G G G A G A G G G G G G G A G
rs230874810
MGI SNP Detail
Alliance Variant
Chr2:127930168 Acoxl Intron
Rr564642 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251247415
MGI SNP Detail
Alliance Variant
Chr2:127930479 Acoxl Intron
Rr564642 111 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220346297
MGI SNP Detail
Alliance Variant
Chr2:127930583 Acoxl Intron
Rr564642 215 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33651713
MGI SNP Detail
Alliance Variant
Chr2:127930584 Acoxl Intron
Rr564642 216 bp distal
SNP C/G C C G
rs263561688
MGI SNP Detail
Alliance Variant
Chr2:127930618 Acoxl Intron
Rr564642 250 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32865844
MGI SNP Detail
Alliance Variant
Chr2:127930884 Acoxl Intron
Rr564642 516 bp distal
SNP A/G G G A
rs49393499
MGI SNP Detail
Alliance Variant
Chr2:127930953 Acoxl Intron
Rr564642 585 bp distal
SNP A/G G G A G
rs254168283
MGI SNP Detail
Alliance Variant
Chr2:127931025 Acoxl Intron
Rr564642 657 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224048687
MGI SNP Detail
Alliance Variant
Chr2:127931122 Acoxl Intron
Rr564642 754 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237291916
MGI SNP Detail
Alliance Variant
Chr2:127931217 Acoxl Intron
Rr564642 849 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255875606
MGI SNP Detail
Alliance Variant
Chr2:127931218 Acoxl Intron
Rr564642 850 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231739060
MGI SNP Detail
Alliance Variant
Chr2:127931271 Acoxl Intron
Rr564642 903 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50140466
MGI SNP Detail
Alliance Variant
Chr2:127931433 Acoxl Intron
Rr564642 1065 bp distal
SNP A/G G G A
rs47352433
MGI SNP Detail
Alliance Variant
Chr2:127931495 Acoxl Intron
Rr564642 1127 bp distal
SNP C/T C C T
rs233873784
MGI SNP Detail
Alliance Variant
Chr2:127931510 Acoxl Intron
Rr564642 1142 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243375416
MGI SNP Detail
Alliance Variant
Chr2:127931552 Acoxl Intron
Rr564642 1184 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs52196827
MGI SNP Detail
Alliance Variant
Chr2:127931636 Acoxl Intron
Rr564642 1268 bp distal
SNP G/T G G T
rs52456901
MGI SNP Detail
Alliance Variant
Chr2:127931637 Acoxl Intron
Rr564642 1269 bp distal
SNP C/T C C T
rs108774862
MGI SNP Detail
Alliance Variant
Chr2:127931650 Acoxl Intron
Rr564642 1282 bp distal
SNP A/T T T A
rs108067975
MGI SNP Detail
Alliance Variant
Chr2:127931651 Acoxl Intron
Rr564642 1283 bp distal
SNP G/T G G T
rs52280981
MGI SNP Detail
Alliance Variant
Chr2:127931652 Acoxl Intron
Rr564642 1284 bp distal
SNP A/C A C A A C
rs212752773
MGI SNP Detail
Alliance Variant
Chr2:127931835 Acoxl Intron
Rr564642 1467 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230793607
MGI SNP Detail
Alliance Variant
Chr2:127931848 Acoxl Intron
Gm23101 Noncoding-Transcript-Variant
Rr564642 1480 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251372283
MGI SNP Detail
Alliance Variant
Chr2:127931949 Acoxl Intron
Gm23101 Noncoding-Transcript-Variant
Rr564642 1581 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215002426
MGI SNP Detail
Alliance Variant
Chr2:127932021 Acoxl Intron
Rr564642 1653 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29501507
MGI SNP Detail
Alliance Variant
Chr2:127932068 Acoxl Intron
Rr564642 1700 bp distal
SNP A/G G A G A G
rs222202058
MGI SNP Detail
Alliance Variant
Chr2:127932139 Acoxl Intron
Rr564642 1771 bp distal
SNP A/T T A
rs226608243
MGI SNP Detail
Alliance Variant
Chr2:127932164 Acoxl Intron
Rr564642 1796 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240722234
MGI SNP Detail
Alliance Variant
Chr2:127932271 Acoxl Intron
Rr564642 1903 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248386498
MGI SNP Detail
Alliance Variant
Chr2:127932328 Acoxl Intron
Rr564642 1960 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 70 of 70

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

Building initial tooltip...