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Mouse SNP Summary
Symbol
Name
ID 		Rr565062
regulatory region 565062
MGI:8027194

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Showing SNP(s) 1 - 52 of 52

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263237004
MGI SNP Detail		 Chr2:130290482 Gm52562 within coordinates of
Rr565062 1993 bp proximal
 SNP C/T C C C C C C T T C C C C C C C C C C C T C C T T C C C T C C C C C T C C C C C T T C C C C T C C T C C C C
rs28325504
MGI SNP Detail		 Chr2:130290707 Gm52562 within coordinates of
Rr565062 1768 bp proximal
 SNP A/G G G G A G G A G G G G G G A G
rs27244004
MGI SNP Detail		 Chr2:130291155 Gm52562 within coordinates of
Rr565062 1320 bp proximal
 SNP A/C C C A C C C C A C A C C A C C C C C
rs27244003
MGI SNP Detail		 Chr2:130291161 Gm52562 within coordinates of
Rr565062 1314 bp proximal
 SNP A/G G G G G G G G G G A G G G G
rs27244002
MGI SNP Detail		 Chr2:130291383 Gm52562 within coordinates of
Rr565062 1092 bp proximal
 SNP C/T C C C C C C C C C C C T C C T
rs27244001
MGI SNP Detail		 Chr2:130291391 Gm52562 within coordinates of
Rr565062 1084 bp proximal
 SNP C/T T T T C T T C T T T C T T C T
rs242982117
MGI SNP Detail		 Chr2:130291402 Gm52562 within coordinates of
Rr565062 1073 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578485769
MGI SNP Detail		 Chr2:130291452 Gm52562 within coordinates of
Rr565062 1023 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs27244000
MGI SNP Detail		 Chr2:130291565 Gm52562 within coordinates of
Rr565062 910 bp proximal
 SNP C/T C C C C C C C C C C T C C C C
rs213400961
MGI SNP Detail		 Chr2:130291605 Gm52562 within coordinates of
Rr565062 870 bp proximal
 SNP A/G G G G G G G A A G G G G G G G G G G G A G G G A G G G G G G G G G G G G G G G A A G G G G A G G G G G G G
rs27243999
MGI SNP Detail		 Chr2:130291681 D2Mit78 within coordinates of
Gm52562 within coordinates of
Rr565062 794 bp proximal
 SNP C/T C C C T C C T C C C C C C T C
rs586481834
MGI SNP Detail		 Chr2:130291706 D2Mit78 within coordinates of
Gm52562 within coordinates of
Rr565062 769 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262712726
MGI SNP Detail		 Chr2:130291858 Cpgi12265 within coordinates of
D2Mit78 within coordinates of
Gm52562 within coordinates of
Rr565061 within coordinates of
Rr565062 617 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs216356512
MGI SNP Detail		 Chr2:130291926 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Rr565061 within coordinates of
Rr565062 549 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241537837
MGI SNP Detail		 Chr2:130291965 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Rr565061 within coordinates of
Rr565062 510 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586160873
MGI SNP Detail		 Chr2:130291991 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Rr565061 within coordinates of
Rr565062 484 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs254863117
MGI SNP Detail		 Chr2:130292021 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Rr565061 within coordinates of
Rr565062 454 bp proximal
 SNP C/T C C C C C C T T C C C C C C C C C C C T C C C T C C C C C C C C C C C C C C C T T C C C C T C C C C C C
rs223838836
MGI SNP Detail		 Chr2:130292138 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Rr565061 within coordinates of
Rr565062 337 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237462242
MGI SNP Detail
Alliance Variant		 Chr2:130292212 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Ptpra mRNA-UTR
Rr565061 within coordinates of
Rr565062 263 bp proximal
Tssr20211 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250729501
MGI SNP Detail
Alliance Variant		 Chr2:130292554 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Ptpra Intron
Rr565062 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222311841
MGI SNP Detail
Alliance Variant		 Chr2:130292775 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Ptpra Intron
Rr565062 within coordinates of
Rr565063 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C
rs244389847
MGI SNP Detail
Alliance Variant		 Chr2:130292798 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Ptpra Intron
Rr565062 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265517913
MGI SNP Detail
Alliance Variant		 Chr2:130292814 Cpgi12265 within coordinates of
Gm52562 within coordinates of
Ptpra Intron
Rr565062 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580039404
MGI SNP Detail
Alliance Variant		 Chr2:130292994 Gm52562 within coordinates of
Ptpra Intron
Rr565062 65 bp distal
 SNP A/G G G G G G G A A G G G G G G G G G G G A G G G A G G G A G G G G G A G G G G G A A G G G G A G G A G G G G
rs583300918
MGI SNP Detail
Alliance Variant		 Chr2:130292996 Gm52562 within coordinates of
Ptpra Intron
Rr565062 67 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232485987
MGI SNP Detail
Alliance Variant		 Chr2:130293299 Gm52562 within coordinates of
Ptpra Intron
Rr565062 370 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs240921307
MGI SNP Detail
Alliance Variant		 Chr2:130293338 Gm52562 within coordinates of
Ptpra Intron
Rr565062 409 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51223956
MGI SNP Detail
Alliance Variant		 Chr2:130293350 Gm52562 within coordinates of
Ptpra Intron
Rr565062 421 bp distal
 SNP C/T T T T T T T C C T T T T T T T T T T T C T T T C T T T C T T T T T C T T T T T C C T T T T C T T C T T T T
rs223491963
MGI SNP Detail
Alliance Variant		 Chr2:130293408 Gm52562 within coordinates of
Ptpra Intron
Rr565062 479 bp distal
 SNP A/T T T T T T T A A T T T T T T T T T T T A T T T A T T T T T T T T T T T T T T T A A T T T T A T T T T T T T
rs242918430
MGI SNP Detail
Alliance Variant		 Chr2:130293477 Gm52562 within coordinates of
Ptpra Intron
Rr565062 548 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213563633
MGI SNP Detail
Alliance Variant		 Chr2:130293502 Ptpra Intron
Rr565062 573 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs230902918
MGI SNP Detail
Alliance Variant		 Chr2:130293516 Ptpra Intron
Rr565062 587 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252081267
MGI SNP Detail
Alliance Variant		 Chr2:130293574 Ptpra Intron
Rr565062 645 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216760798
MGI SNP Detail
Alliance Variant		 Chr2:130293585 Ptpra Intron
Rr565062 656 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239132080
MGI SNP Detail
Alliance Variant		 Chr2:130293612 Ptpra Intron
Rr565062 683 bp distal
 SNP A/G G G G G G G A A G G G G G G G G G G G A G G G A G G G A G G G G A G G G G G A A G G G G A G G G G G G G
rs254930265
MGI SNP Detail
Alliance Variant		 Chr2:130293733 Ptpra Intron
Rr565062 804 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs217738088
MGI SNP Detail
Alliance Variant		 Chr2:130293742 Ptpra Intron
Rr565062 813 bp distal
 SNP C/T T T T T T T C C T T T T T T T T T T T C T T T C T T T T T T T T T C T T T T T C C T T T T C T T T T T T T
rs230245521
MGI SNP Detail
Alliance Variant		 Chr2:130293753 Ptpra Intron
Rr565062 824 bp distal
 SNP A/G G G G G G G A A G G G G G G G G G G G A G G G A G G G A G G G G G A G G G G G A A G G G G A G G A G G G G
rs250714546
MGI SNP Detail
Alliance Variant		 Chr2:130293764 Ptpra Intron
Rr565062 835 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222857504
MGI SNP Detail
Alliance Variant		 Chr2:130293774 Ptpra Intron
Rr565062 845 bp distal
 SNP C/T T T T T T T C C T T T T T T T T T T T C T T T C T T T C T T T T C T T T T T C C T T T T C T T C T T T T
rs247054394
MGI SNP Detail
Alliance Variant		 Chr2:130293827 Ptpra Intron
Rr565062 898 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258781149
MGI SNP Detail
Alliance Variant		 Chr2:130294060 Ptpra Intron
Rr565062 1131 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225432876
MGI SNP Detail
Alliance Variant		 Chr2:130294153 Ptpra Intron
Rr565062 1224 bp distal
 SNP A/G G G G G G G A A G G G G G G G G G G G A G G G A G G G G G G G G G G G G G G G A A G G G G A G G G G G G G
rs240862775
MGI SNP Detail
Alliance Variant		 Chr2:130294299 Ptpra Intron
Rr565062 1370 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259957115
MGI SNP Detail
Alliance Variant		 Chr2:130294401 Ptpra Intron
Rr565062 1472 bp distal
 SNP A/C C C C C C C A A C C C C C C C C C C C A C C C A C C C A C C C C C C C C C C C A A C C C C A C C A C C C C
rs29505675
MGI SNP Detail
Alliance Variant		 Chr2:130294603 Ptpra Intron
Rr565062 1674 bp distal
 SNP C/T T T C C C T
rs236716261
MGI SNP Detail
Alliance Variant		 Chr2:130294647 Ptpra Intron
Rr565062 1718 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265033668
MGI SNP Detail
Alliance Variant		 Chr2:130294672 Ptpra Intron
Rr565062 1743 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs230815292
MGI SNP Detail
Alliance Variant		 Chr2:130294694 Ptpra Intron
Rr565062 1765 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46364610
MGI SNP Detail
Alliance Variant		 Chr2:130294717 Ptpra Intron
Rr565062 1788 bp distal
 SNP A/T A A T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs50661565
MGI SNP Detail
Alliance Variant		 Chr2:130294838 Ptpra Intron
Rr565062 1909 bp distal
 SNP A/T T T T A
rs49044731
MGI SNP Detail
Alliance Variant		 Chr2:130294839 Ptpra Intron
Rr565062 1910 bp distal
 SNP A/C C C C A
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Showing SNP(s) 1 - 52 of 52
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory