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Mouse SNP Summary
Symbol
Name
ID 		Rr565542
regulatory region 565542
MGI:8027674

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258067985
MGI SNP Detail		 Chr2:132687242 Gm14104 within coordinates of
Rr565542 1953 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs215961110
MGI SNP Detail		 Chr2:132687264 Gm14104 within coordinates of
Rr565542 1931 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27259443
MGI SNP Detail		 Chr2:132687286 Gm14104 within coordinates of
Rr565542 1909 bp proximal
 SNP A/G G G G G G G G G G A G G A G
rs230339440
MGI SNP Detail		 Chr2:132687400 Gm14104 within coordinates of
Rr565542 1795 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253496412
MGI SNP Detail		 Chr2:132687449 Gm14104 within coordinates of
Rr565542 1746 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222200227
MGI SNP Detail		 Chr2:132687452 Gm14104 within coordinates of
Rr565542 1743 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239001327
MGI SNP Detail		 Chr2:132687462 Gm14104 within coordinates of
Rr565542 1733 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263041079
MGI SNP Detail		 Chr2:132687527 Gm14104 within coordinates of
Rr565542 1668 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C T C C C C C C T C C C C C C C T C C C C
rs224032752
MGI SNP Detail		 Chr2:132687584 Gm14104 within coordinates of
Rr565542 1611 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246601149
MGI SNP Detail		 Chr2:132687592 Gm14104 within coordinates of
Rr565542 1603 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257241024
MGI SNP Detail		 Chr2:132687660 Gm14104 within coordinates of
Rr565542 1535 bp proximal
 SNP A/C/G C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218537378
MGI SNP Detail		 Chr2:132687667 Gm14104 within coordinates of
Rr565542 1528 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237181538
MGI SNP Detail		 Chr2:132687670 Gm14104 within coordinates of
Rr565542 1525 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232727570
MGI SNP Detail		 Chr2:132687678 Gm14104 within coordinates of
Rr565542 1517 bp proximal
 SNP C C C
rs234017377
MGI SNP Detail		 Chr2:132687699 Gm14104 within coordinates of
Rr565542 1496 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253084029
MGI SNP Detail		 Chr2:132687736 Gm14104 within coordinates of
Rr565542 1459 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265467777
MGI SNP Detail		 Chr2:132687744 Gm14104 within coordinates of
Rr565542 1451 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231082630
MGI SNP Detail		 Chr2:132687774 Gm14104 within coordinates of
Rr565542 1421 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243951263
MGI SNP Detail		 Chr2:132687783 Gm14104 within coordinates of
Rr565542 1412 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212989464
MGI SNP Detail		 Chr2:132687825 Gm14104 within coordinates of
Rr565542 1370 bp proximal
 SNP C/T C C C C T C C C C T C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C T C C C C C C C C C
rs223539687
MGI SNP Detail		 Chr2:132687890 Gm14104 within coordinates of
Rr565542 1305 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108005748
MGI SNP Detail		 Chr2:132687930 Gm14104 within coordinates of
Rr565542 1265 bp proximal
 SNP A/G G A A G G
rs218630796
MGI SNP Detail		 Chr2:132687943 Gm14104 within coordinates of
Rr565542 1252 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs241565785
MGI SNP Detail		 Chr2:132687956 Gm14104 within coordinates of
Rr565542 1239 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215447799
MGI SNP Detail		 Chr2:132687991 Gm14104 within coordinates of
Rr565542 1204 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236772191
MGI SNP Detail		 Chr2:132688022 Gm14104 within coordinates of
Rr565542 1173 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs250978138
MGI SNP Detail		 Chr2:132688046 Gm14104 within coordinates of
Rr565542 1149 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218647583
MGI SNP Detail		 Chr2:132688048 Gm14104 within coordinates of
Rr565542 1147 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236894295
MGI SNP Detail		 Chr2:132688262 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr397335 within coordinates of
Rr565540 within coordinates of
Rr565542 933 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs254922347
MGI SNP Detail		 Chr2:132688263 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr397335 within coordinates of
Rr565540 within coordinates of
Rr565542 932 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587196764
MGI SNP Detail		 Chr2:132688349 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr397335 within coordinates of
Rr565540 within coordinates of
Rr565542 846 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225771397
MGI SNP Detail		 Chr2:132688401 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr397335 within coordinates of
Rr565540 within coordinates of
Rr565542 794 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs248857565
MGI SNP Detail		 Chr2:132688414 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr565540 within coordinates of
Rr565542 781 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263115879
MGI SNP Detail		 Chr2:132688450 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr565540 within coordinates of
Rr565542 745 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230995844
MGI SNP Detail		 Chr2:132688484 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr367323 within coordinates of
Rr565540 within coordinates of
Rr565542 711 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs237774779
MGI SNP Detail		 Chr2:132688502 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr367323 within coordinates of
Rr565540 within coordinates of
Rr565541 within coordinates of
Rr565542 693 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G A G G G G G G A G G G G G G G G G G G G
rs254807720
MGI SNP Detail		 Chr2:132688510 Cpgi12311 within coordinates of
Gm14104 within coordinates of
Rr367323 within coordinates of
Rr565540 within coordinates of
Rr565541 within coordinates of
Rr565542 685 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs223627212
MGI SNP Detail
Alliance Variant		 Chr2:132688563 Cpgi12311 within coordinates of
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr367323 within coordinates of
Rr565540 within coordinates of
Rr565542 632 bp proximal
Tssr20338 within coordinates of
 SNP A/G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs247563474
MGI SNP Detail
Alliance Variant		 Chr2:132688621 Cpgi12311 within coordinates of
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr367323 within coordinates of
Rr565542 574 bp proximal
Tssr20338 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs218186517
MGI SNP Detail
Alliance Variant		 Chr2:132688694 Cpgi12311 within coordinates of
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 501 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G T T G G G G T G G G G G G T G G G G G G G T G G G G
rs232734482
MGI SNP Detail
Alliance Variant		 Chr2:132688716 Cpgi12311 within coordinates of
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 479 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257671252
MGI SNP Detail
Alliance Variant		 Chr2:132688722 Cpgi12311 within coordinates of
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 473 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215102083
MGI SNP Detail
Alliance Variant		 Chr2:132688728 Cpgi12311 within coordinates of
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 467 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C A C C C C C C A C C C C C C C C C C C C
rs232162326
MGI SNP Detail
Alliance Variant		 Chr2:132688735 Cpgi12311 within coordinates of
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 460 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs250692775
MGI SNP Detail
Alliance Variant		 Chr2:132688781 Cpgi12311 within coordinates of
Crls1 Coding-Synonymous
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 414 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C A A C C C C A C C C C C C A C C C C C C C C C C C C
rs212691408
MGI SNP Detail
Alliance Variant		 Chr2:132688788 Cpgi12311 within coordinates of
Crls1 Coding-NonSynonymous
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 407 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229739229
MGI SNP Detail
Alliance Variant		 Chr2:132688868 Cpgi12311 within coordinates of
Crls1 Coding-Synonymous
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 327 bp proximal
Tssr20340 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs581222173
MGI SNP Detail
Alliance Variant		 Chr2:132688926 Cpgi12311 within coordinates of
Crls1 Coding-NonSynonymous
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 269 bp proximal
 SNP A/G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G
rs584977509
MGI SNP Detail
Alliance Variant		 Chr2:132688955 Cpgi12311 within coordinates of
Crls1 Coding-Synonymous
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 240 bp proximal
 SNP G/T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260642397
MGI SNP Detail
Alliance Variant		 Chr2:132689006 Cpgi12311 within coordinates of
Crls1 Coding-Synonymous
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 189 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C T C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225717770
MGI SNP Detail
Alliance Variant		 Chr2:132689199 Cpgi12311 within coordinates of
Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246421224
MGI SNP Detail
Alliance Variant		 Chr2:132689200 Cpgi12311 within coordinates of
Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262868147
MGI SNP Detail
Alliance Variant		 Chr2:132689220 Cpgi12311 within coordinates of
Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs223346069
MGI SNP Detail
Alliance Variant		 Chr2:132689251 Cpgi12311 within coordinates of
Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237454829
MGI SNP Detail
Alliance Variant		 Chr2:132689344 Cpgi12311 within coordinates of
Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs254510601
MGI SNP Detail
Alliance Variant		 Chr2:132689404 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T G G T T T T T G T T T T T T G T T T T T T T G T T T T
rs223673252
MGI SNP Detail
Alliance Variant		 Chr2:132689417 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs241691913
MGI SNP Detail
Alliance Variant		 Chr2:132689461 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264061676
MGI SNP Detail
Alliance Variant		 Chr2:132689517 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233159847
MGI SNP Detail
Alliance Variant		 Chr2:132689530 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Gm14104 within coordinates of
Rr565542 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C T C C C C C C T C C C C C C C C C C C C
rs252323463
MGI SNP Detail
Alliance Variant		 Chr2:132689588 Crls1 Intron
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Rr565542 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C C T T T T T C T T T T T T C T T T T T T T C T T T T
rs265397155
MGI SNP Detail
Alliance Variant		 Chr2:132689726 Crls1 Intron
Crls1 mRNA-UTR
Crls1 Noncoding-Transcript-Variant
Rr565542 62 bp distal
Rr565543 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T C T T T T T T C T T T T T T T T T T T T
rs226143605
MGI SNP Detail
Alliance Variant		 Chr2:132689836 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 172 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T C T T T T T T C T T T T T T T T T T T T
rs244566898
MGI SNP Detail
Alliance Variant		 Chr2:132690063 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 399 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G A G G G G G G A G G G G G G G A G G G G
rs212302568
MGI SNP Detail
Alliance Variant		 Chr2:132690120 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 456 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229749305
MGI SNP Detail
Alliance Variant		 Chr2:132690139 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 475 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259862411
MGI SNP Detail
Alliance Variant		 Chr2:132690140 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 476 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs217562367
MGI SNP Detail
Alliance Variant		 Chr2:132690254 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 590 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T C T T T T T T C T T T T T T T C T T T T
rs240626494
MGI SNP Detail
Alliance Variant		 Chr2:132690256 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 592 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579193743
MGI SNP Detail
Alliance Variant		 Chr2:132690351 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 687 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs258304135
MGI SNP Detail
Alliance Variant		 Chr2:132690535 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 871 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs220047429
MGI SNP Detail
Alliance Variant		 Chr2:132690615 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 951 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231388334
MGI SNP Detail
Alliance Variant		 Chr2:132690621 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 957 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248807090
MGI SNP Detail
Alliance Variant		 Chr2:132690646 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 982 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217815224
MGI SNP Detail
Alliance Variant		 Chr2:132690651 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 987 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248549113
MGI SNP Detail
Alliance Variant		 Chr2:132690725 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1061 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265962346
MGI SNP Detail
Alliance Variant		 Chr2:132690770 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1106 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G A G G G G G G A G G G G G G G A G G G G
rs581555840
MGI SNP Detail
Alliance Variant		 Chr2:132690784 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1120 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225123535
MGI SNP Detail
Alliance Variant		 Chr2:132690807 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1143 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs247937761
MGI SNP Detail
Alliance Variant		 Chr2:132690847 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1183 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs262808672
MGI SNP Detail
Alliance Variant		 Chr2:132690861 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1197 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226155074
MGI SNP Detail
Alliance Variant		 Chr2:132690862 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1198 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244580307
MGI SNP Detail
Alliance Variant		 Chr2:132690868 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1204 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs256305821
MGI SNP Detail
Alliance Variant		 Chr2:132690874 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1210 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229442263
MGI SNP Detail
Alliance Variant		 Chr2:132690898 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1234 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs49460282
MGI SNP Detail
Alliance Variant		 Chr2:132690908 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1244 bp distal
 SNP C/T C T T C C
rs217860622
MGI SNP Detail
Alliance Variant		 Chr2:132690914 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1250 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C C T T T T T C T T T T T T C T T T T T T T T T T T T
rs238451386
MGI SNP Detail
Alliance Variant		 Chr2:132690915 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1251 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C A A C C C C C A C C C C C C A C C C C C C C A C C C C
rs256897635
MGI SNP Detail
Alliance Variant		 Chr2:132690976 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1312 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs214049697
MGI SNP Detail
Alliance Variant		 Chr2:132690989 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1325 bp distal
 SNP A/C/G C C C C C C C C C C C C C C C C C C C C C C G C C C G G C C C C C G C C C C C C G C C C C C C C A C C C C
rs231402103
MGI SNP Detail
Alliance Variant		 Chr2:132691083 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1419 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A T T A A A A A T A A A A A A T A A A A A A A T A A A A
rs248868999
MGI SNP Detail
Alliance Variant		 Chr2:132691100 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1436 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs217868731
MGI SNP Detail
Alliance Variant		 Chr2:132691113 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1449 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C C T T T T T C T T T T T T C T T T T T T T C T T T T
rs242931353
MGI SNP Detail
Alliance Variant		 Chr2:132691130 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1466 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260135834
MGI SNP Detail
Alliance Variant		 Chr2:132691211 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1547 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225458366
MGI SNP Detail
Alliance Variant		 Chr2:132691309 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1645 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245427469
MGI SNP Detail
Alliance Variant		 Chr2:132691502 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1838 bp distal
 SNP A/C/T A A A A A A A A A A A A A A A A A A A A A A C A A A C C A A A A A C A A A A A A C A A A A A A A T A A A A
rs258408604
MGI SNP Detail
Alliance Variant		 Chr2:132691520 Crls1 Intron
Crls1 Noncoding-Transcript-Variant
Rr565542 1856 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T G G T T T T T G T T T T T T G T T T T T T G T T T T
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Showing SNP(s) 1 - 98 of 98
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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