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Mouse SNP Summary
Symbol
Name
ID
Rr566423
regulatory region 566423
MGI:8028555

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33413478
MGI SNP Detail
Alliance Variant
Chr2:144107470 Rr566423 1834 bp proximal
Snx5 Intron
SNP A/G G A A
rs249972151
MGI SNP Detail
Alliance Variant
Chr2:144107497 Rr566423 1807 bp proximal
Snx5 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218149233
MGI SNP Detail
Alliance Variant
Chr2:144107674 Rr566423 1630 bp proximal
Snx5 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs240536852
MGI SNP Detail
Alliance Variant
Chr2:144107694 Rr566423 1610 bp proximal
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29669616
MGI SNP Detail
Alliance Variant
Chr2:144107795 Rr566423 1509 bp proximal
Snx5 Intron
SNP A/T A T T
rs216213831
MGI SNP Detail
Alliance Variant
Chr2:144107845 Rr566422 within coordinates of
Rr566423 1459 bp proximal
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29814190
MGI SNP Detail
Alliance Variant
Chr2:144108214 Rr566422 within coordinates of
Rr566423 1090 bp proximal
Snx5 Intron
SNP C/T T C C T
rs33597644
MGI SNP Detail
Alliance Variant
Chr2:144108260 Rr566422 within coordinates of
Rr566423 1044 bp proximal
Snx5 Intron
SNP A/G A G A
rs33071496
MGI SNP Detail
Alliance Variant
Chr2:144108288 Rr566422 within coordinates of
Rr566423 1016 bp proximal
Snx5 Intron
SNP A/G A G G A
rs581899428
MGI SNP Detail
Alliance Variant
Chr2:144108335 Rr566423 969 bp proximal
Snx5 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245408084
MGI SNP Detail
Alliance Variant
Chr2:144108577 Rr566423 727 bp proximal
Snx5 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259983466
MGI SNP Detail
Alliance Variant
Chr2:144108720 Rr566423 584 bp proximal
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29956450
MGI SNP Detail
Alliance Variant
Chr2:144108839 Rr566423 465 bp proximal
Snx5 Intron
SNP C/T C T T C
rs239029358
MGI SNP Detail
Alliance Variant
Chr2:144108859 Rr566423 445 bp proximal
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257839974
MGI SNP Detail
Alliance Variant
Chr2:144108909 Rr566423 395 bp proximal
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33666533
MGI SNP Detail
Alliance Variant
Chr2:144108989 Rr566423 315 bp proximal
Snx5 Intron
SNP A/G G A G
rs264576992
MGI SNP Detail
Alliance Variant
Chr2:144109039 Rr566423 265 bp proximal
Snx5 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228734815
MGI SNP Detail
Alliance Variant
Chr2:144109092 Rr566423 212 bp proximal
Snx5 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259206815
MGI SNP Detail
Alliance Variant
Chr2:144109124 Rr566423 180 bp proximal
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33148313
MGI SNP Detail
Alliance Variant
Chr2:144109218 Rr566423 86 bp proximal
Snx5 Intron
SNP A/G A G G A
rs229273713
MGI SNP Detail
Alliance Variant
Chr2:144109287 Rr566423 17 bp proximal
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246706422
MGI SNP Detail
Alliance Variant
Chr2:144109317 Rr566423 within coordinates of
Snx5 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29579495
MGI SNP Detail
Alliance Variant
Chr2:144109380 Rr566423 within coordinates of
Snx5 Intron
SNP C/G C C G
rs33142737
MGI SNP Detail
Alliance Variant
Chr2:144109508 Rr566423 within coordinates of
Snx5 Intron
SNP A/C A A C A C
rs586567060
MGI SNP Detail
Alliance Variant
Chr2:144109523 Rr566423 within coordinates of
Snx5 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252317306
MGI SNP Detail
Alliance Variant
Chr2:144109532 Rr566423 within coordinates of
Snx5 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32875446
MGI SNP Detail
Alliance Variant
Chr2:144109672 Rr566423 within coordinates of
Snx5 Intron
SNP C/G G G C
rs235845701
MGI SNP Detail
Alliance Variant
Chr2:144109904 Rr566423 within coordinates of
Snx5 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32894147
MGI SNP Detail
Alliance Variant
Chr2:144109930 Rr566423 within coordinates of
Snx5 Intron
SNP C/T T C
rs226340796
MGI SNP Detail
Alliance Variant
Chr2:144110008 Rr566423 within coordinates of
Snx5 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238882380
MGI SNP Detail
Alliance Variant
Chr2:144110078 Rr566423 within coordinates of
Snx5 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs251631321
MGI SNP Detail
Alliance Variant
Chr2:144110087 Rr566423 within coordinates of
Snx5 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219183304
MGI SNP Detail
Alliance Variant
Chr2:144110123 Rr566423 12 bp distal
Snx5 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs238118324
MGI SNP Detail
Alliance Variant
Chr2:144110128 Rr566423 17 bp distal
Snx5 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs261436894
MGI SNP Detail
Alliance Variant
Chr2:144110208 Rr566423 97 bp distal
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229078817
MGI SNP Detail
Alliance Variant
Chr2:144110434 Rr566423 323 bp distal
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247450837
MGI SNP Detail
Alliance Variant
Chr2:144110520 Rr566423 409 bp distal
Snx5 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs266127793
MGI SNP Detail
Alliance Variant
Chr2:144110530 Rr566423 419 bp distal
Snx5 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs227284840
MGI SNP Detail
Alliance Variant
Chr2:144110535 Rr566423 424 bp distal
Snx5 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs32880378
MGI SNP Detail
Alliance Variant
Chr2:144110626 Rr566423 515 bp distal
Snx5 Intron
SNP G/T G G T T G
rs215935263
MGI SNP Detail
Alliance Variant
Chr2:144110638 Rr566423 527 bp distal
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225962112
MGI SNP Detail
Alliance Variant
Chr2:144110657 Rr566423 546 bp distal
Snx5 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256497642
MGI SNP Detail
Alliance Variant
Chr2:144110721 Rr566423 610 bp distal
Snx5 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212326957
MGI SNP Detail
Alliance Variant
Chr2:144110729 Rr566423 618 bp distal
Snx5 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237463258
MGI SNP Detail
Alliance Variant
Chr2:144111032 Rr566423 921 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254155707
MGI SNP Detail
Alliance Variant
Chr2:144111064 Rr566423 953 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217609096
MGI SNP Detail
Alliance Variant
Chr2:144111071 Rr566423 960 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233148619
MGI SNP Detail
Alliance Variant
Chr2:144111080 Rr566423 969 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251664597
MGI SNP Detail
Alliance Variant
Chr2:144111081 Rr566423 970 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219089667
MGI SNP Detail
Alliance Variant
Chr2:144111086 Rr566423 975 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231971860
MGI SNP Detail
Alliance Variant
Chr2:144111087 Rr566423 976 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs33668958
MGI SNP Detail
Alliance Variant
Chr2:144111126 Rr566423 1015 bp distal
Rr566424 within coordinates of
Snx5 Intron
SNP A/T T T A A T
rs260687807
MGI SNP Detail
Alliance Variant
Chr2:144111403 Rr566423 1292 bp distal
Rr566424 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579264598
MGI SNP Detail
Alliance Variant
Chr2:144111414 Rr566423 1303 bp distal
Rr566424 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs582475322
MGI SNP Detail
Alliance Variant
Chr2:144111416 Rr566423 1305 bp distal
Rr566424 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585888659
MGI SNP Detail
Alliance Variant
Chr2:144111435 Rr566423 1324 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29876681
MGI SNP Detail
Alliance Variant
Chr2:144111441 Rr566423 1330 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G G A A G
rs29957158
MGI SNP Detail
Alliance Variant
Chr2:144111496 Rr566423 1385 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G A G A
rs579827107
MGI SNP Detail
Alliance Variant
Chr2:144111500 Rr566423 1389 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221000200
MGI SNP Detail
Alliance Variant
Chr2:144111538 Rr566423 1427 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/C A A C C C C C A C C C C C C C C C A C C A A C C A C C A C C C C A A C C C C C C C C C C C C C C
rs241205011
MGI SNP Detail
Alliance Variant
Chr2:144111550 Rr566423 1439 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/T A T T T T T A T T T T T T T T T A T T A A A T T A T T A T A T T T A A T T T T T T T T T T T
rs260046664
MGI SNP Detail
Alliance Variant
Chr2:144111567 Rr566423 1456 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29682435
MGI SNP Detail
Alliance Variant
Chr2:144111577 Rr566423 1466 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/T A T A T A
rs29909123
MGI SNP Detail
Alliance Variant
Chr2:144111660 Rr566423 1549 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/C A C A
rs264702370
MGI SNP Detail
Alliance Variant
Chr2:144111671 Rr566423 1560 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228979141
MGI SNP Detail
Alliance Variant
Chr2:144111689 Rr566423 1578 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A
rs259511012
MGI SNP Detail
Alliance Variant
Chr2:144111732 Rr566423 1621 bp distal
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217479997
MGI SNP Detail
Alliance Variant
Chr2:144111830 Rr566423 1719 bp distal
Rr566425 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233227780
MGI SNP Detail
Alliance Variant
Chr2:144111861 Rr566423 1750 bp distal
Rr566425 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246313503
MGI SNP Detail
Alliance Variant
Chr2:144111865 Rr566423 1754 bp distal
Rr566425 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29540721
MGI SNP Detail
Alliance Variant
Chr2:144111934 Rr566423 1823 bp distal
Rr566425 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G G A A G
rs238677324
MGI SNP Detail
Alliance Variant
Chr2:144112095 Cpgi12351 within coordinates of
Rr566423 1984 bp distal
Rr566425 within coordinates of
Snx5 Intron
Snx5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 72 of 72

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory