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Mouse SNP Summary
Symbol
Name
ID 		Rr571086
regulatory region 571086
MGI:8033218

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583567459
MGI SNP Detail
Alliance Variant		 Chr2:168605603 Rr374246 within coordinates of
Rr571086 1960 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586514674
MGI SNP Detail
Alliance Variant		 Chr2:168605610 Rr374246 within coordinates of
Rr571086 1953 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27287880
MGI SNP Detail
Alliance Variant		 Chr2:168605679 Rr374246 within coordinates of
Rr571086 1884 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G A G G G G G G G G
rs247332939
MGI SNP Detail
Alliance Variant		 Chr2:168605787 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1776 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs259742174
MGI SNP Detail
Alliance Variant		 Chr2:168605840 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1723 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T G T T T T T T T G T T T T
rs227326062
MGI SNP Detail
Alliance Variant		 Chr2:168605844 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1719 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs245742845
MGI SNP Detail
Alliance Variant		 Chr2:168605942 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1621 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27287879
MGI SNP Detail
Alliance Variant		 Chr2:168605957 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1606 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A C A
rs27287878
MGI SNP Detail
Alliance Variant		 Chr2:168606011 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1552 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T G T
rs254286159
MGI SNP Detail
Alliance Variant		 Chr2:168606210 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1353 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs212212438
MGI SNP Detail
Alliance Variant		 Chr2:168606212 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1351 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243234925
MGI SNP Detail
Alliance Variant		 Chr2:168606315 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1248 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs260487736
MGI SNP Detail
Alliance Variant		 Chr2:168606345 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1218 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216147643
MGI SNP Detail
Alliance Variant		 Chr2:168606366 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1197 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233089949
MGI SNP Detail
Alliance Variant		 Chr2:168606367 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1196 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27287877
MGI SNP Detail
Alliance Variant		 Chr2:168606536 Rr374246 within coordinates of
Rr571083 within coordinates of
Rr571086 1027 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G A G
rs580848906
MGI SNP Detail
Alliance Variant		 Chr2:168606721 Rr374246 within coordinates of
Rr571086 842 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219674080
MGI SNP Detail
Alliance Variant		 Chr2:168606786 Rr374246 within coordinates of
Rr571086 777 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs241823067
MGI SNP Detail
Alliance Variant		 Chr2:168606816 Rr374246 within coordinates of
Rr571086 747 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260599944
MGI SNP Detail
Alliance Variant		 Chr2:168606828 Rr374246 within coordinates of
Rr571086 735 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226442238
MGI SNP Detail
Alliance Variant		 Chr2:168606991 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 572 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27287876
MGI SNP Detail
Alliance Variant		 Chr2:168606993 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 570 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G A G G G G G G G G
rs259673756
MGI SNP Detail
Alliance Variant		 Chr2:168607167 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 396 bp proximal
Sall4 Intron
Sall4 mRNA-UTR
Sall4 Noncoding-Transcript-Variant
Tssr27873 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227264909
MGI SNP Detail
Alliance Variant		 Chr2:168607183 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 380 bp proximal
Sall4 Intron
Sall4 mRNA-UTR
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239563323
MGI SNP Detail
Alliance Variant		 Chr2:168607441 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 122 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257549227
MGI SNP Detail
Alliance Variant		 Chr2:168607463 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 100 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs27287875
MGI SNP Detail
Alliance Variant		 Chr2:168607496 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 67 bp proximal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C C G C
rs249988648
MGI SNP Detail
Alliance Variant		 Chr2:168607616 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212282094
MGI SNP Detail
Alliance Variant		 Chr2:168607764 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234047964
MGI SNP Detail
Alliance Variant		 Chr2:168607782 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585104082
MGI SNP Detail
Alliance Variant		 Chr2:168607813 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246892726
MGI SNP Detail
Alliance Variant		 Chr2:168607978 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587512411
MGI SNP Detail
Alliance Variant		 Chr2:168607992 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr571086 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs216086883
MGI SNP Detail
Alliance Variant		 Chr2:168608226 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 163 bp distal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233125520
MGI SNP Detail
Alliance Variant		 Chr2:168608256 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 193 bp distal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244789595
MGI SNP Detail
Alliance Variant		 Chr2:168608372 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 309 bp distal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214285806
MGI SNP Detail
Alliance Variant		 Chr2:168608448 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 385 bp distal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237506582
MGI SNP Detail
Alliance Variant		 Chr2:168608573 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 510 bp distal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
Tssr27877 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255187319
MGI SNP Detail
Alliance Variant		 Chr2:168608742 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 679 bp distal
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226820530
MGI SNP Detail
Alliance Variant		 Chr2:168608876 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 813 bp distal
Sall4 Coding-NonSynonymous
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A T A A A T
rs27287874
MGI SNP Detail
Alliance Variant		 Chr2:168609330 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1267 bp distal
Rr571087 within coordinates of
Sall4 Intron
Sall4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A G A
rs253426529
MGI SNP Detail
Alliance Variant		 Chr2:168609741 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1678 bp distal
Sall4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220801189
MGI SNP Detail
Alliance Variant		 Chr2:168609786 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1723 bp distal
Sall4 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239604968
MGI SNP Detail
Alliance Variant		 Chr2:168609808 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1745 bp distal
Sall4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27287873
MGI SNP Detail
Alliance Variant		 Chr2:168609809 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1746 bp distal
Sall4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A G A
rs221490140
MGI SNP Detail
Alliance Variant		 Chr2:168609810 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1747 bp distal
Sall4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs243928251
MGI SNP Detail		 Chr2:168609945 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1882 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27287872
MGI SNP Detail		 Chr2:168609950 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1887 bp distal
 SNP A/G A A A A A A A A A A A A A G A
rs235097529
MGI SNP Detail		 Chr2:168609986 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr571086 1923 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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