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Mouse SNP Summary
Symbol
Name
ID 		Rr574953
regulatory region 574953
MGI:8037085

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30505348
MGI SNP Detail		 Chr3:32448952 Gm65709 within coordinates of
Rr574953 1861 bp proximal
 SNP A/C C A C A A
rs259561878
MGI SNP Detail		 Chr3:32449155 Gm65709 within coordinates of
Rr574953 1658 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225414870
MGI SNP Detail		 Chr3:32449190 Gm65709 within coordinates of
Rr574953 1623 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245467667
MGI SNP Detail		 Chr3:32449212 Gm65709 within coordinates of
Rr574953 1601 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs255817671
MGI SNP Detail		 Chr3:32449296 Gm65709 within coordinates of
Rr574953 1517 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C
rs584297764
MGI SNP Detail		 Chr3:32449328 Gm65709 within coordinates of
Rr574953 1485 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A
rs224767693
MGI SNP Detail		 Chr3:32449331 Gm65709 within coordinates of
Rr574953 1482 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586788592
MGI SNP Detail		 Chr3:32449332 Gm65709 within coordinates of
Rr574953 1481 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A
rs580660019
MGI SNP Detail		 Chr3:32449336 Gm65709 within coordinates of
Rr574953 1477 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259019069
MGI SNP Detail		 Chr3:32449365 Gm65709 within coordinates of
Rr574953 1448 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30548069
MGI SNP Detail		 Chr3:32449369 Gm65709 within coordinates of
Rr574953 1444 bp proximal
 SNP A/C A C A A
rs219032466
MGI SNP Detail		 Chr3:32449370 Gm65709 within coordinates of
Rr574953 1443 bp proximal
 SNP A/C A A C C A A A A C C C A A A A A A A A A A A A C A A C A C A A C A C C C A A C C A C
rs29858609
MGI SNP Detail		 Chr3:32449406 Gm65709 within coordinates of
Rr574953 1407 bp proximal
 SNP C/T T T T T T T C T T T T T T T T
rs231481923
MGI SNP Detail		 Chr3:32449439 Gm65709 within coordinates of
Rr574953 1374 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G
rs29858608
MGI SNP Detail		 Chr3:32449470 Gm65709 within coordinates of
Rr574953 1343 bp proximal
 SNP C/T T T T T T T C T T T T T T T
rs218076699
MGI SNP Detail		 Chr3:32449537 Gm65709 within coordinates of
Rr574953 1276 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G
rs235590036
MGI SNP Detail		 Chr3:32449569 Gm65709 within coordinates of
Rr574953 1244 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C
rs263905611
MGI SNP Detail		 Chr3:32449570 Gm65709 within coordinates of
Rr574953 1243 bp proximal
 SNP A/G/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T A T G T T T T
rs227051919
MGI SNP Detail		 Chr3:32449792 Gm65709 within coordinates of
Rr574953 1021 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A
rs29858607
MGI SNP Detail		 Chr3:32449793 Gm65709 within coordinates of
Rr574953 1020 bp proximal
 SNP A/G G G G G A G G G G G G
rs260272128
MGI SNP Detail		 Chr3:32449799 Gm65709 within coordinates of
Rr574953 1014 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A G A A A A
rs219928891
MGI SNP Detail		 Chr3:32449828 Gm65709 within coordinates of
Rr574953 985 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239376631
MGI SNP Detail		 Chr3:32449838 Gm65709 within coordinates of
Rr574953 975 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255727102
MGI SNP Detail		 Chr3:32449906 Gm65709 within coordinates of
Rr574953 907 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T C T C T T T T
rs579322223
MGI SNP Detail		 Chr3:32450069 Gm65709 within coordinates of
Rr574953 744 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228930988
MGI SNP Detail		 Chr3:32450138 Gm65709 within coordinates of
Rr574953 675 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A G A A A A
rs29858606
MGI SNP Detail		 Chr3:32450162 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 651 bp proximal
 SNP A/T A T T A A T T A T T T T T A T A
rs29858605
MGI SNP Detail		 Chr3:32450177 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 636 bp proximal
 SNP C/T T T T T T T C T T T T T T T
rs29858604
MGI SNP Detail		 Chr3:32450207 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 606 bp proximal
 SNP A/G G G G G G G A G G G G G G G
rs245908341
MGI SNP Detail		 Chr3:32450233 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 580 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213608862
MGI SNP Detail		 Chr3:32450284 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 529 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T G T G T T T T
rs226066231
MGI SNP Detail		 Chr3:32450296 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 517 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29857873
MGI SNP Detail		 Chr3:32450360 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 453 bp proximal
 SNP C/G C C C C C C G C C C C C C C
rs29857872
MGI SNP Detail		 Chr3:32450415 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 398 bp proximal
 SNP A/T A T T A A T T A T T T A T A A T A
rs237385309
MGI SNP Detail		 Chr3:32450475 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 338 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs260398827
MGI SNP Detail		 Chr3:32450521 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 292 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A G A A A A
rs582773899
MGI SNP Detail		 Chr3:32450545 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 268 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259052418
MGI SNP Detail		 Chr3:32450629 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 184 bp proximal
 SNP G G G
rs238155607
MGI SNP Detail		 Chr3:32450811 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 2 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253898438
MGI SNP Detail		 Chr3:32450812 Gm65709 within coordinates of
Rr574952 within coordinates of
Rr574953 1 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30162473
MGI SNP Detail		 Chr3:32450910 Cpgi13056 within coordinates of
Gm65709 within coordinates of
Rr574953 within coordinates of
 SNP A/G G A A G G
rs29857871
MGI SNP Detail		 Chr3:32451185 Cpgi13056 within coordinates of
Rr397633 within coordinates of
Rr574953 within coordinates of
Tssr28746 within coordinates of
 SNP C/T C T T C C C C T T T T C T C T C
rs585002480
MGI SNP Detail
Alliance Variant		 Chr3:32451749 Cpgi13056 within coordinates of
Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 525 bp distal
Rr574954 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs249248329
MGI SNP Detail
Alliance Variant		 Chr3:32451847 Cpgi13056 within coordinates of
Pik3ca Intron
Pik3ca mRNA-UTR
Pik3ca Noncoding-Transcript-Variant
Rr574953 623 bp distal
Rr574956 within coordinates of
 SNP A/C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G G G G G G G G G A G G G G
rs221031659
MGI SNP Detail
Alliance Variant		 Chr3:32452089 Cpgi13056 within coordinates of
Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 865 bp distal
Rr574956 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30554037
MGI SNP Detail
Alliance Variant		 Chr3:32452156 Cpgi13056 within coordinates of
Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 932 bp distal
Rr574956 within coordinates of
 SNP A/G A G A G G G
rs264308663
MGI SNP Detail
Alliance Variant		 Chr3:32452269 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1045 bp distal
Rr574956 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A
rs30697678
MGI SNP Detail
Alliance Variant		 Chr3:32452366 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1142 bp distal
Rr574956 within coordinates of
Tssr32929 within coordinates of
 SNP A/G G A G A A A
rs239857825
MGI SNP Detail
Alliance Variant		 Chr3:32452415 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1191 bp distal
Rr574956 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255249550
MGI SNP Detail
Alliance Variant		 Chr3:32452524 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1300 bp distal
Rr574956 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G A G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226030243
MGI SNP Detail
Alliance Variant		 Chr3:32452547 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1323 bp distal
Rr574956 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs242300787
MGI SNP Detail
Alliance Variant		 Chr3:32452588 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1364 bp distal
Rr574956 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G
rs228830223
MGI SNP Detail
Alliance Variant		 Chr3:32452666 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1442 bp distal
Rr574956 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G A G A G G G G
rs259307783
MGI SNP Detail
Alliance Variant		 Chr3:32452696 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1472 bp distal
Rr574956 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219455369
MGI SNP Detail
Alliance Variant		 Chr3:32452731 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1507 bp distal
Rr574956 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A T A A A A A A A A A A A A A T A A A A
rs234167437
MGI SNP Detail
Alliance Variant		 Chr3:32452790 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1566 bp distal
Rr574956 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253832762
MGI SNP Detail
Alliance Variant		 Chr3:32452947 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1723 bp distal
Rr574956 within coordinates of
 SNP C/G/T C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C T C G C C C C
rs213928886
MGI SNP Detail
Alliance Variant		 Chr3:32452954 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1730 bp distal
Rr574956 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs233243183
MGI SNP Detail
Alliance Variant		 Chr3:32453042 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1818 bp distal
Rr574956 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249979578
MGI SNP Detail
Alliance Variant		 Chr3:32453048 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1824 bp distal
Rr574956 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221611539
MGI SNP Detail
Alliance Variant		 Chr3:32453099 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1875 bp distal
Rr574956 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T C T C T T T T
rs246975612
MGI SNP Detail
Alliance Variant		 Chr3:32453107 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1883 bp distal
Rr574956 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264039401
MGI SNP Detail
Alliance Variant		 Chr3:32453135 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1911 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30351500
MGI SNP Detail
Alliance Variant		 Chr3:32453185 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1961 bp distal
 SNP A/C C C A C A A A
rs30458665
MGI SNP Detail
Alliance Variant		 Chr3:32453191 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1967 bp distal
 SNP C/T C C T C T T
rs255205548
MGI SNP Detail
Alliance Variant		 Chr3:32453210 Pik3ca Intron
Pik3ca Noncoding-Transcript-Variant
Rr574953 1986 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 66 of 66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory