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Mouse SNP Summary
Symbol
Name
ID 		Rr575155
regulatory region 575155
MGI:8037287

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232299322
MGI SNP Detail		 Chr3:34622170 Gm42695 within coordinates of
Rr575155 1994 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs245919025
MGI SNP Detail		 Chr3:34622211 Gm42695 within coordinates of
Rr575155 1953 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs585596913
MGI SNP Detail		 Chr3:34622310 Gm42695 within coordinates of
Rr575155 1854 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262742893
MGI SNP Detail		 Chr3:34622457 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1707 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223506404
MGI SNP Detail		 Chr3:34622516 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1648 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242731740
MGI SNP Detail		 Chr3:34622560 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1604 bp proximal
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T A T T T T T T T T T T T T A T T A T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs216404974
MGI SNP Detail		 Chr3:34622647 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1517 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49942716
MGI SNP Detail		 Chr3:34622657 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1507 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G A G A G G G
rs47868195
MGI SNP Detail		 Chr3:34622692 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1472 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G A G G G G G G G
rs50611448
MGI SNP Detail		 Chr3:34622694 Gm42695 within coordinates of
Rr575154 within coordinates of
Rr575155 1470 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C T C T C C C
rs216503202
MGI SNP Detail		 Chr3:34622731 Gm42695 within coordinates of
Rr575155 1433 bp proximal
Sox2ot within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs387644580
MGI SNP Detail		 Chr3:34622938 Gm42695 within coordinates of
Rr575155 1226 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A G A G A A A A A G A A A A A A A A A A A A A A A A A
rs52161893
MGI SNP Detail		 Chr3:34622949 Gm42695 within coordinates of
Rr575155 1215 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C T T C C C C C C T
rs52450871
MGI SNP Detail		 Chr3:34622955 Gm42695 within coordinates of
Rr575155 1209 bp proximal
Sox2ot within coordinates of
 SNP G/T T T T T T T T T G T G T T T
rs584136824
MGI SNP Detail		 Chr3:34622990 Gm42695 within coordinates of
Rr575155 1174 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs262158157
MGI SNP Detail		 Chr3:34623097 Gm42695 within coordinates of
Rr575155 1067 bp proximal
Sox2ot within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs214731521
MGI SNP Detail		 Chr3:34623156 Gm42695 within coordinates of
Rr575155 1008 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs230227279
MGI SNP Detail		 Chr3:34623261 Gm42695 within coordinates of
Rr575155 903 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250500798
MGI SNP Detail		 Chr3:34623317 Gm42695 within coordinates of
Rr575155 847 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49680337
MGI SNP Detail		 Chr3:34623353 Gm42695 within coordinates of
Rr575155 811 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C T C T C C C
rs242931005
MGI SNP Detail		 Chr3:34623404 Gm42695 within coordinates of
Rr575155 760 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587179640
MGI SNP Detail		 Chr3:34623428 Gm42695 within coordinates of
Rr575155 736 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579467668
MGI SNP Detail		 Chr3:34623474 Gm42695 within coordinates of
Rr575155 690 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs582948425
MGI SNP Detail		 Chr3:34623525 Gm42695 within coordinates of
Rr575155 639 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A G A G G G G G G G G G G G G G G G G G G G G A G G G
rs584886817
MGI SNP Detail		 Chr3:34623554 Gm42695 within coordinates of
Rr575155 610 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258853487
MGI SNP Detail		 Chr3:34623635 Gm42695 within coordinates of
Rr575155 529 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225423243
MGI SNP Detail		 Chr3:34623684 Gm42695 within coordinates of
Rr575155 480 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242942637
MGI SNP Detail		 Chr3:34623743 Gm42695 within coordinates of
Rr575155 421 bp proximal
Sox2ot within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs387075585
MGI SNP Detail		 Chr3:34623781 Gm42695 within coordinates of
Rr575155 383 bp proximal
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A C A A A A A A A A A A A A C A A C A C A A A A A C A A A A A A A A A A A A A A A A A A A
rs265257012
MGI SNP Detail		 Chr3:34623790 Gm42695 within coordinates of
Rr575155 374 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G T G G G G G G G G G G G G G G G G G G G T G
rs581401239
MGI SNP Detail		 Chr3:34623794 Gm42695 within coordinates of
Rr575155 370 bp proximal
Sox2ot within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223473450
MGI SNP Detail		 Chr3:34623798 Gm42695 within coordinates of
Rr575155 366 bp proximal
Sox2ot within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236695284
MGI SNP Detail		 Chr3:34623802 Gm42695 within coordinates of
Rr575155 362 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G T G T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G
rs258607249
MGI SNP Detail		 Chr3:34623809 Gm42695 within coordinates of
Rr575155 355 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs228971218
MGI SNP Detail		 Chr3:34623825 Gm42695 within coordinates of
Rr575155 339 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs256853815
MGI SNP Detail		 Chr3:34623839 Gm42695 within coordinates of
Rr575155 325 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs263434545
MGI SNP Detail		 Chr3:34623840 Gm42695 within coordinates of
Rr575155 324 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs387323557
MGI SNP Detail		 Chr3:34623849 Gm42695 within coordinates of
Rr575155 315 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G A G A G G G G A G G G G G G G G G G G G G G G G G G G
rs229961624
MGI SNP Detail		 Chr3:34623868 Gm42695 within coordinates of
Rr575155 296 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A G A G A A A A G A A A A A A G A A A A A A A G A A A A
rs579259475
MGI SNP Detail		 Chr3:34623873 Gm42695 within coordinates of
Rr575155 291 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs581773279
MGI SNP Detail		 Chr3:34623877 Gm42695 within coordinates of
Rr575155 287 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs250944523
MGI SNP Detail		 Chr3:34623906 Gm42695 within coordinates of
Rr575155 258 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs214695537
MGI SNP Detail		 Chr3:34623961 Gm42695 within coordinates of
Rr575155 203 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs230197146
MGI SNP Detail		 Chr3:34623963 Gm42695 within coordinates of
Rr575155 201 bp proximal
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs244655056
MGI SNP Detail		 Chr3:34623972 Gm42695 within coordinates of
Rr575155 192 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs386970668
MGI SNP Detail		 Chr3:34623986 Gm42695 within coordinates of
Rr575155 178 bp proximal
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A C A A A A A A A A A A A A C A A C A C A A A A A C A A A A A A A A A A A A A A A A A A A
rs216742453
MGI SNP Detail		 Chr3:34624016 Gm42695 within coordinates of
Rr575155 148 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs240345948
MGI SNP Detail		 Chr3:34624023 Gm42695 within coordinates of
Rr575155 141 bp proximal
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T A T T T T
rs262955636
MGI SNP Detail		 Chr3:34624058 Gm42695 within coordinates of
Rr575155 106 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225114147
MGI SNP Detail		 Chr3:34624082 Gm42695 within coordinates of
Rr575155 82 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238347343
MGI SNP Detail		 Chr3:34624088 Gm42695 within coordinates of
Rr575155 76 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs257724075
MGI SNP Detail		 Chr3:34624172 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217894956
MGI SNP Detail		 Chr3:34624209 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs51264457
MGI SNP Detail		 Chr3:34624211 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A G A G A A
rs578696126
MGI SNP Detail		 Chr3:34624223 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C A C C C C C C C C C C C C A C C A C A C C C C C A C C C C C C C C C C C C C C C C C C C
rs582359045
MGI SNP Detail		 Chr3:34624224 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A G A G A A A A A G A A A A A A A A A A A A A A A A A A A
rs46653852
MGI SNP Detail		 Chr3:34624230 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G G G G G G A G G G G G G G
rs51311440
MGI SNP Detail		 Chr3:34624241 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/T T T T T T T A T A T A T T T
rs244732197
MGI SNP Detail		 Chr3:34624258 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265633264
MGI SNP Detail		 Chr3:34624261 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs229558408
MGI SNP Detail		 Chr3:34624265 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs256035918
MGI SNP Detail		 Chr3:34624347 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs387119307
MGI SNP Detail		 Chr3:34624360 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G T G G G G G G G G G G G G T G G T G T G G G G G T G G G G G G G G G G G G G G G G G G G
rs258594241
MGI SNP Detail		 Chr3:34624368 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs387433344
MGI SNP Detail		 Chr3:34624377 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G A G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs47565463
MGI SNP Detail		 Chr3:34624398 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP C/T T T T T T T T T C T C T T T
rs387099282
MGI SNP Detail		 Chr3:34624449 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C T C T C C C C T C C C C C C C C C C C C C C C C C C C
rs49608121
MGI SNP Detail		 Chr3:34624466 Gm42695 within coordinates of
Rr575155 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A G A G A G A A A A
rs216973367
MGI SNP Detail		 Chr3:34624503 Gm42695 within coordinates of
Rr575155 19 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs243521194
MGI SNP Detail		 Chr3:34624525 Gm42695 within coordinates of
Rr575155 41 bp distal
Sox2ot within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs252326678
MGI SNP Detail		 Chr3:34624619 Gm42695 within coordinates of
Rr575155 135 bp distal
Sox2ot within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs217294753
MGI SNP Detail		 Chr3:34624670 Gm42695 within coordinates of
Rr575155 186 bp distal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs236370592
MGI SNP Detail		 Chr3:34624723 Gm42695 within coordinates of
Rr575155 239 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs250689484
MGI SNP Detail		 Chr3:34624748 Gm42695 within coordinates of
Rr575155 264 bp distal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs218123831
MGI SNP Detail		 Chr3:34624839 Gm42695 within coordinates of
Rr575155 355 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230561197
MGI SNP Detail		 Chr3:34624934 Gm42695 within coordinates of
Rr575155 450 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs252560794
MGI SNP Detail		 Chr3:34624935 Gm42695 within coordinates of
Rr575155 451 bp distal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A G A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs226633559
MGI SNP Detail		 Chr3:34624990 Gm42695 within coordinates of
Rr575155 506 bp distal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A G A G G G A G A G A G A A A G A A A A A A G A A A A A G A G A G A G
rs247812557
MGI SNP Detail		 Chr3:34625019 Gm42695 within coordinates of
Rr575155 535 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs263394893
MGI SNP Detail		 Chr3:34625020 Gm42695 within coordinates of
Rr575155 536 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs221769713
MGI SNP Detail		 Chr3:34625043 Gm42695 within coordinates of
Rr575155 559 bp distal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243845695
MGI SNP Detail		 Chr3:34625057 Gm42695 within coordinates of
Rr575155 573 bp distal
Sox2ot within coordinates of
 SNP C/G G G G G G G G G G C G G G G G G G G G C G G C G G C G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs255781197
MGI SNP Detail		 Chr3:34625070 Gm42695 within coordinates of
Rr575155 586 bp distal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T C T T T T T T T T T C T C C C T C T C T C T T T C T T T T T T C T T T T T C T C T C T C
rs224763828
MGI SNP Detail		 Chr3:34625071 Gm42695 within coordinates of
Rr575155 587 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs387328259
MGI SNP Detail		 Chr3:34625142 Gm42695 within coordinates of
Rr575155 658 bp distal
Sox2ot within coordinates of
 SNP C/G G G G G G G G G G C G G G G G G G G G G G G C G G C G G G G G G C G G G G G G G G G G G G G G G G G G G
rs238307904
MGI SNP Detail		 Chr3:34625147 Gm42695 within coordinates of
Rr575155 663 bp distal
Sox2ot within coordinates of
 SNP G/T T T T T T T T T T G T T T T T T T T T G T T G T T G T T T T T T T T T T T T G T T T T T T T T T T T T
rs260883007
MGI SNP Detail		 Chr3:34625174 Gm42695 within coordinates of
Rr575155 690 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs234207900
MGI SNP Detail		 Chr3:34625189 Gm42695 within coordinates of
Rr575155 705 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580500001
MGI SNP Detail		 Chr3:34625271 Gm42695 within coordinates of
Rr575155 787 bp distal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs230254611
MGI SNP Detail		 Chr3:34625376 Gm42695 within coordinates of
Rr575155 892 bp distal
Sox2ot within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A
rs244631219
MGI SNP Detail		 Chr3:34625430 Gm42695 within coordinates of
Rr575155 946 bp distal
Sox2ot within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212232360
MGI SNP Detail		 Chr3:34625603 Gm42695 within coordinates of
Rr575155 1119 bp distal
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs230889668
MGI SNP Detail		 Chr3:34625638 Gm42695 within coordinates of
Rr575155 1154 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs387256924
MGI SNP Detail		 Chr3:34625654 Gm42695 within coordinates of
Rr575155 1170 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G A G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs252528012
MGI SNP Detail		 Chr3:34625702 Gm42695 within coordinates of
Rr575155 1218 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs218973031
MGI SNP Detail		 Chr3:34625878 Gm42695 within coordinates of
Rr575155 1394 bp distal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237848807
MGI SNP Detail		 Chr3:34625887 Gm42695 within coordinates of
Rr575155 1403 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50841187
MGI SNP Detail		 Chr3:34626253 Gm42695 within coordinates of
Rr575155 1769 bp distal
Sox2ot within coordinates of
 SNP A/C A A A A A A A A C A C A A C A
rs48768778
MGI SNP Detail		 Chr3:34626399 Rr575155 1915 bp distal
Rr575156 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A G A
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Showing SNP(s) 1 - 99 of 99
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory